Phyre 2 alignment of P77489 with c3h0dB_

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Job Description | P77489
Confidence | 17.90% | Date | Thu Jan 5 12:29:50 GMT 2012
Rank | 100 | Aligned Residues | 26
% Identity | 31% | Template | c3h0dB_
PDB info | PDB header:transcription/dna | Chain: B: PDB Molecule:ctsr; | PDBTitle: crystal structure of ctsr in complex with a 26bp dna duplex
Resolution | 2.40 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 217 | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | 240 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Query Sequence |  | R | T | D | L | A | K | T | L | K | V | P | V | E | N | V | R | . | . | . | . | . | . | . | . | . | . | . | . | . | . | I | I | S | P | Y | I | G | G | G | F
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | R | S | E | I | A | N | K | F | R | C | V | P | S | Q | I | N | Y | V | I | N | T | R | F | T | L | E | R | G | Y | I | V | E | S | K | R | G | G | G | G | Y
Template Known Secondary structure |  |  |  |  |  |  |  |  | T | T | S |  | T |  |  |  |  |  |  |  |  |  |  | S |  | T | T | T | T |  |  |  |  |  |  |  | S | T | T |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 28 | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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