19/01/2012 11:05:13 : INFO  : Run start: Thu Jan 19 11:05:11 GMT 2012
19/01/2012 11:05:21 : INFO  : Initialised job
19/01/2012 11:05:24 : INFO  : Renaming log file 'phyre2_20120119_110510.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/18f1a0230431dc24/phyre_20120119_110510.log'
19/01/2012 11:05:26 : INFO  : Initialised job:
Sequence
>batch____
MKFDKPAGENPIDQLKVVGRPHDRIDGPLKTTGTARYAYEWHEEAPNAAYGYIVGSAIAK
GRLTALDTDAAQKAPGVLAVITASNAGALGKGDKNTARLLGGPTIEHYHQAIALVVAETF
EQARAAASLVQAHYRRNKGAYSLADEKQAVNQPPEDTPDKNVGDFDGAFTSAAVKIDATY
TTPDQSHMAMEPHASMAVWDGNKLTLWTSNQMIDWCRTDLAKTLKVPVENVRIISPYIGG
GFGGKLFLRSDALLAALAARAVKRPVKVMLPRPSIPNNTTHRPATLQHLRIGADQSGKIT
AISHESWSGNLPGGTPETAVQQSELLYAGANRHTGLRLATLDLPEGNAMRAPGEAPGLMA
LEIAIDELAEKAGIDPVEFRILNDTQVDPADPTRCFSRRQLIECLRTGADKFGWKQRNAT
PGQVRDGEWLVGHGVAAGFRNNLLEKSGARVHLEQNGTVTVETDMTDIGTGSYTILAQTA
AEMLGVPLEQVAVHLGDSSFPVSAGSGGQWGANTSTSGVYAACMKLREMIASAVGFDPEQ
SQFADGKITNGTRSATLHEATAGGRLTAEESIEFGTLSKEYQQSTFAGHFVEVGVHSATG
EVRVRRMLAVCAAGRILNPKTARSQVIGAMTMGMGAALMEELAVDDRLGYFVNHDMAGYE
VPVHADIPKQEVIFLDDTDPISSPMKAKGVGELGLCGVSAAIANAVYNATGIRVRDYPIT
LDKLLDKLPDVV

19/01/2012 11:05:27 : INFO  : Checked sequence
19/01/2012 11:05:32 : INFO  : Finding homologues with PSI-BLAST
19/01/2012 11:05:33 : INFO  : PSI-BLAST 3 iterations
19/01/2012 11:09:43 : INFO  : PSI-BLAST 5 iterations
19/01/2012 11:14:35 : INFO  : Finished PSI-BLAST
19/01/2012 11:14:38 : INFO  : Running Buildali to generate a3m file
19/01/2012 11:35:43 : INFO  : Converting to HMM
19/01/2012 11:35:54 : INFO  : Calibrating HMM
19/01/2012 11:36:24 : INFO  : Searching HMM database
19/01/2012 11:50:50 : INFO  : Finished buildali
19/01/2012 11:50:52 : INFO  : Predicting secondary structure
19/01/2012 11:51:04 : INFO  : Predicted secondary structure (PSI-Pred)
19/01/2012 11:51:06 : INFO  : Predicting Disordered regions
19/01/2012 11:51:14 : INFO  : Predicted Disorder (Disopred)
19/01/2012 11:51:16 : INFO  : Running memsat_svm check
19/01/2012 11:55:22 : INFO  : Running memsat_svm full
19/01/2012 12:02:17 : INFO  : Predicted Transmembrane (memsat_svm) ID '18f1a0230431dc24'
19/01/2012 12:02:19 : INFO  : Initialising fold library search
19/01/2012 12:02:23 : INFO  : Initialised search input
19/01/2012 12:02:26 : INFO  : Building Ensemble models
19/01/2012 12:02:31 : INFO  : Building hh.c1sb3D_.model.1.pdb
19/01/2012 12:02:53 : INFO  : Building hh.c1ffvB_.model.2.pdb
19/01/2012 12:03:11 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/18f1a0230431dc24/hh.c1ffvB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/18f1a0230431dc24/c1ffvB_.1.pdb
19/01/2012 12:03:17 : INFO  : Building hh.c2w54F_.model.3.pdb
19/01/2012 12:03:35 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/18f1a0230431dc24/hh.c2w54F_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/18f1a0230431dc24/c2w54F_.3.pdb
19/01/2012 12:03:40 : INFO  : Building hh.c1n62E_.model.4.pdb
19/01/2012 12:03:57 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/18f1a0230431dc24/hh.c1n62E_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/18f1a0230431dc24/c1n62E_.4.pdb
19/01/2012 12:04:05 : INFO  : Building hh.c1t3qB_.model.5.pdb
19/01/2012 12:04:22 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/18f1a0230431dc24/hh.c1t3qB_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/18f1a0230431dc24/c1t3qB_.5.pdb
19/01/2012 12:04:28 : INFO  : Building hh.c1wygA_.model.6.pdb
19/01/2012 12:04:45 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/18f1a0230431dc24/hh.c1wygA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/18f1a0230431dc24/c1wygA_.6.pdb
19/01/2012 12:04:50 : INFO  : Building c1ffvB_.1.pdb
19/01/2012 12:05:12 : INFO  : Building c1sb3D_.2.pdb
19/01/2012 12:05:31 : INFO  : Building c2w54F_.3.pdb
19/01/2012 12:05:52 : INFO  : Building c1n62E_.4.pdb
19/01/2012 12:06:12 : INFO  : Building c1t3qB_.5.pdb
19/01/2012 12:06:32 : INFO  : Building c1wygA_.6.pdb
19/01/2012 12:06:53 : INFO  : Building c3eubL_.7.pdb
19/01/2012 12:07:13 : INFO  : Building c1vlbA_.8.pdb
19/01/2012 12:07:33 : INFO  : Building c1dgjA_.9.pdb
19/01/2012 12:07:52 : INFO  : Building d1jrob2.10.pdb
19/01/2012 12:08:12 : INFO  : Building d1rm6a2.11.pdb
19/01/2012 12:08:32 : INFO  : Building d1n62b2.12.pdb
19/01/2012 12:08:54 : INFO  : Building d1ffvb2.13.pdb
19/01/2012 12:09:17 : INFO  : Building d1t3qb2.14.pdb
19/01/2012 12:09:37 : INFO  : Building d1v97a5.15.pdb
19/01/2012 12:09:57 : INFO  : Building d1vlba4.16.pdb
19/01/2012 12:10:17 : INFO  : Building d1dgja4.17.pdb
19/01/2012 12:10:36 : INFO  : Building c3hrdE_.18.pdb
19/01/2012 12:10:56 : INFO  : Building c3hrdF_.19.pdb
19/01/2012 12:11:15 : INFO  : Building d1t3qb1.20.pdb
19/01/2012 12:14:32 : INFO  : Finished HH model building
19/01/2012 12:14:34 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
19/01/2012 12:15:55 : INFO  : html domain output complete ID '18f1a0230431dc24'
19/01/2012 21:23:12 : INFO  : Run end  : Thu Jan 19 21:23:11 GMT 2012
