Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Y	F	L	N	D	L	N	F	S	R	R	D	A	G	F	K	A	R	K	D	A	L	D	I	A	S	D	Y	E	N	I	S	V	V	N	I	P	L	W	G	G	V	V	Q	R	I	I	S	S	V	K	L	S	T	F	L	C	G	L
Secondary structure
SS confidence
Disorder		?				?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	N	K	D	V	L	I	F	N	F	P	M	A	K	P	F	W	H	I	L	S	F	F	H	R	L	L	K	F	R	I	V	P	L	I	H	D	I	D	E	L	R	G	G	G	G	S	D	S	V	R	L	A	T	C	D	M	V	I	S
Secondary structure
SS confidence
Disorder																																											?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		H	N	P	Q	M	T	K	Y	L	S	K	Y	M	S	Q	D	K	I	K	D	I	K	I	F	D	Y	L	V	S	S	D	V	E	H	R	D	V	T	D	K	Q	R	G	V	I	Y	A	G	N	L	S	R	H	K	C	S	F	I	Y	T
Secondary structure
SS confidence
Disorder																		?														?	?	?	?	?	?	?	?	?	?														?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	G	C	D	F	T	L	F	G	V	N	Y	E	N	K	D	N	P	K	Y	L	G	S	F	D	A	Q	S	P	E	K	I	N	L	P	G	M	Q	F	G	L	I	W	D	G	D	S	V	E	T	C	S	G	A	F	G	D	Y	L	K
Secondary structure
SS confidence
Disorder																												?	?	?	?				?	?	?	?														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		F	N	N	P	H	K	T	S	L	Y	L	S	M	E	L	P	V	F	I	W	D	K	A	A	L	A	D	F	I	V	D	N	R	I	G	Y	A	V	G	S	I	K	E	M	Q	E	I	V	D	S	M	T	I	E	T	Y	K	Q	I	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Sequence		E	N	T	K	I	I	S	Q	K	I	R	T	G	S	Y	F	R	D	V	L	E	E	V	I	D	D	L	K	T	R
Secondary structure
SS confidence
Disorder																												?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3rhz chain B Region: 1 - 324 Aligned: 307 Modelled: 324 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:nucleotide sugar synthetase-like protein; PDBTitle: structure and functional analysis of a new subfamily of2 glycosyltransferases required for glycosylation of serine-rich3 streptococcal adhesions Phyre2 PDB 3oy2 chain A Region: 51 - 329 Aligned: 273 Modelled: 279 Confidence: 100.0% Identity: 11% PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a Phyre2 PDB 3s29 chain C Region: 43 - 328 Aligned: 280 Modelled: 286 Confidence: 100.0% Identity: 13% PDB header:transferase Chain: C: PDB Molecule:sucrose synthase 1; PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications. Phyre2 PDB 2r60 chain A Region: 38 - 329 Aligned: 286 Modelled: 292 Confidence: 100.0% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii Phyre2 PDB 2jjm chain H Region: 30 - 327 Aligned: 293 Modelled: 298 Confidence: 100.0% Identity: 11% PDB header:transferase Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein; PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558. Phyre2 PDB 2xmp chain B Region: 38 - 329 Aligned: 283 Modelled: 286 Confidence: 100.0% Identity: 16% PDB header:sugar binding protein Chain: B: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp Phyre2 PDB 2x6r chain A Region: 37 - 329 Aligned: 284 Modelled: 287 Confidence: 100.0% Identity: 15% PDB header:isomerase Chain: A: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose Phyre2 PDB 3c4v chain B Region: 38 - 329 Aligned: 282 Modelled: 292 Confidence: 100.0% Identity: 9% PDB header:transferase Chain: B: PDB Molecule:predicted glycosyltransferases; PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p. Phyre2 PDB 3oka chain A Region: 48 - 328 Aligned: 277 Modelled: 278 Confidence: 100.0% Identity: 9% PDB header:transferase Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form) Phyre2 PDB 2bis chain A domain 1 Region: 46 - 328 Aligned: 275 Modelled: 283 Confidence: 99.9% Identity: 11% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: Glycosyl transferases group 1 Phyre2 PDB 2iw1 chain A domain 1 Region: 39 - 328 Aligned: 278 Modelled: 290 Confidence: 99.9% Identity: 9% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: Glycosyl transferases group 1 Phyre2 PDB 1uqu chain B Region: 46 - 328 Aligned: 271 Modelled: 283 Confidence: 99.9% Identity: 15% PDB header:synthase Chain: B: PDB Molecule:alpha, alpha-trehalose-phosphate synthase; PDBTitle: trehalose-6-phosphate from e. coli bound with udp-glucose. Phyre2 PDB 2gej chain A Region: 48 - 329 Aligned: 273 Modelled: 278 Confidence: 99.9% Identity: 10% PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima); PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man Phyre2 PDB 2qzs chain A Region: 42 - 328 Aligned: 281 Modelled: 287 Confidence: 99.9% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:glycogen synthase; PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb) Phyre2 PDB 1uqt chain A Region: 46 - 328 Aligned: 271 Modelled: 283 Confidence: 99.9% Identity: 14% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: Trehalose-6-phosphate synthase, OtsA Phyre2 PDB 1rzu chain A Region: 42 - 329 Aligned: 281 Modelled: 285 Confidence: 99.9% Identity: 10% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: Glycosyl transferases group 1 Phyre2 PDB 2x0d chain A Region: 59 - 295 Aligned: 228 Modelled: 235 Confidence: 99.9% Identity: 7% PDB header:transferase Chain: A: PDB Molecule:wsaf; PDBTitle: apo structure of wsaf Phyre2 PDB 3nb0 chain A Region: 41 - 325 Aligned: 284 Modelled: 285 Confidence: 99.9% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:glycogen [starch] synthase isoform 2; PDBTitle: glucose-6-phosphate activated form of yeast glycogen synthase Phyre2 PDB 3o3c chain D Region: 41 - 325 Aligned: 284 Modelled: 285 Confidence: 99.9% Identity: 13% PDB header:transferase Chain: D: PDB Molecule:glycogen [starch] synthase isoform 2; PDBTitle: glycogen synthase basal state udp complex Phyre2 PDB 2xcu chain C Region: 56 - 325 Aligned: 257 Modelled: 270 Confidence: 99.9% Identity: 13% PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp Phyre2 1 c3rhzB_ 2 c3oy2A_ 3 c3s29C_ 4 c2r60A_ 5 c2jjmH_ 6 c2xmpB_ 7 c2x6rA_ 8 c3c4vB_ 9 c3okaA_ 10 d2bisa1 11 d2iw1a1 12 c1uquB_ 13 c2gejA_ 14 c2qzsA_ 15 d1uqta_ 16 d1rzua_ 17 c2x0dA_ 18 c3nb0A_ 19 c3o3cD_ 20 c2xcuC_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3rhzB_ 100.0 17 PDB header:transferase Chain: B: PDB Molecule:nucleotide sugar synthetase-like protein; PDBTitle: structure and functional analysis of a new subfamily of2 glycosyltransferases required for glycosylation of serine-rich3 streptococcal adhesions 2 c3oy2A_ 100.0 11 PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a 3 c3s29C_ 100.0 13 PDB header:transferase Chain: C: PDB Molecule:sucrose synthase 1; PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications. 4 c2r60A_ 100.0 12 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 5 c2jjmH_ 100.0 11 PDB header:transferase Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein; PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558. 6 c2xmpB_ 100.0 16 PDB header:sugar binding protein Chain: B: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp 7 c2x6rA_ 100.0 15 PDB header:isomerase Chain: A: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose 8 c3c4vB_ 100.0 9 PDB header:transferase Chain: B: PDB Molecule:predicted glycosyltransferases; PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p. 9 c3okaA_ 100.0 9 PDB header:transferase Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form) 10 d2bisa1 99.9 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 11 d2iw1a1 99.9 9 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 12 c1uquB_ 99.9 15 PDB header:synthase Chain: B: PDB Molecule:alpha, alpha-trehalose-phosphate synthase; PDBTitle: trehalose-6-phosphate from e. coli bound with udp-glucose. 13 c2gejA_ 99.9 10 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima); PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man 14 c2qzsA_ 99.9 12 PDB header:transferase Chain: A: PDB Molecule:glycogen synthase; PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb) 15 d1uqta_ 99.9 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Trehalose-6-phosphate synthase, OtsA 16 d1rzua_ 99.9 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 17 c2x0dA_ 99.9 7 PDB header:transferase Chain: A: PDB Molecule:wsaf; PDBTitle: apo structure of wsaf 18 c3nb0A_ 99.9 11 PDB header:transferase Chain: A: PDB Molecule:glycogen [starch] synthase isoform 2; PDBTitle: glucose-6-phosphate activated form of yeast glycogen synthase 19 c3o3cD_ 99.9 13 PDB header:transferase Chain: D: PDB Molecule:glycogen [starch] synthase isoform 2; PDBTitle: glycogen synthase basal state udp complex 20 c2xcuC_ 99.9 13 PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp 21 c3ot5D_ not modelled 99.9 8 PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes 22 c2q6vA_ not modelled 99.9 13 PDB header:transferase Chain: A: PDB Molecule:glucuronosyltransferase gumk; PDBTitle: crystal structure of gumk in complex with udp 23 c3dzcA_ not modelled 99.8 10 PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. 24 d1f6da_ not modelled 99.8 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 25 d1v4va_ not modelled 99.8 7 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 26 c2iv3B_ not modelled 99.8 10 PDB header:transferase Chain: B: PDB Molecule:glycosyltransferase; PDBTitle: crystal structure of avigt4, a glycosyltransferase involved2 in avilamycin a biosynthesis 27 d2f9fa1 not modelled 99.8 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 28 d1o6ca_ not modelled 99.7 9 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 29 c3qhpB_ not modelled 99.7 12 PDB header:transferase Chain: B: PDB Molecule:type 1 capsular polysaccharide biosynthesis protein j PDBTitle: crystal structure of the catalytic domain of cholesterol-alpha-2 glucosyltransferase from helicobacter pylori 30 d1f0ka_ not modelled 99.6 9 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Peptidoglycan biosynthesis glycosyltransferase MurG 31 d2bfwa1 not modelled 99.5 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 32 c2vsnB_ not modelled 99.5 10 PDB header:transferase Chain: B: PDB Molecule:xcogt; PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation 33 c3othB_ not modelled 99.4 8 PDB header:transferase/antibiotic Chain: B: PDB Molecule:calg1; PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form 34 c3pe3D_ not modelled 99.4 9 PDB header:transferase Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n- PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate 35 c3ia7A_ not modelled 99.3 10 PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase 36 c3iaaB_ not modelled 99.3 9 PDB header:transferase Chain: B: PDB Molecule:calg2; PDBTitle: crystal structure of calg2, calicheamicin glycosyltransferase, tdp2 bound form 37 c2iyaB_ not modelled 98.9 17 PDB header:transferase Chain: B: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering 38 c2p6pB_ not modelled 98.9 15 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase; PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2 39 c3d0qB_ not modelled 98.9 9 PDB header:transferase Chain: B: PDB Molecule:protein calg3; PDBTitle: crystal structure of calg3 from micromonospora echinospora determined2 in space group i222 40 c2iyfA_ not modelled 98.8 9 PDB header:transferase Chain: A: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering 41 d1iira_ not modelled 98.8 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 42 d1pn3a_ not modelled 98.4 18 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 43 d1rrva_ not modelled 98.3 9 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 44 d2c1xa1 not modelled 98.1 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 45 c3hbjA_ not modelled 98.0 7 PDB header:transferase Chain: A: PDB Molecule:flavonoid 3-o-glucosyltransferase; PDBTitle: structure of ugt78g1 complexed with udp 46 d2pq6a1 not modelled 98.0 17 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 47 c3l7mC_ not modelled 97.9 14 PDB header:structural protein Chain: C: PDB Molecule:teichoic acid biosynthesis protein f; PDBTitle: structure of the wall teichoic acid polymerase tagf, h548a 48 d2vcha1 not modelled 97.5 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 49 d2acva1 not modelled 97.5 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 50 c2o6lA_ not modelled 97.0 11 PDB header:transferase Chain: A: PDB Molecule:udp-glucuronosyltransferase 2b7; PDBTitle: crystal structure of the udp-glucuronic acid binding domain2 of the human drug metabolizing udp-glucuronosyltransferase3 2b7 51 c3q3hA_ not modelled 95.9 10 PDB header:transferase Chain: A: PDB Molecule:hmw1c-like glycosyltransferase; PDBTitle: crystal structure of the actinobacillus pleuropneumoniae hmw1c2 glycosyltransferase in complex with udp-glc 52 c3hbmA_ not modelled 95.4 9 PDB header:hydrolase Chain: A: PDB Molecule:udp-sugar hydrolase; PDBTitle: crystal structure of pseg from campylobacter jejuni 53 c2jzcA_ not modelled 80.6 6 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine transferase subunit PDBTitle: nmr solution structure of alg13: the sugar donor subunit of2 a yeast n-acetylglucosamine transferase. northeast3 structural genomics consortium target yg1 54 c2iz6A_ not modelled 78.1 17 PDB header:metal transport Chain: A: PDB Molecule:molybdenum cofactor carrier protein; PDBTitle: structure of the chlamydomonas rheinhardtii moco carrier2 protein 55 d1pswa_ not modelled 73.9 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:ADP-heptose LPS heptosyltransferase II 56 d2nzwa1 not modelled 73.5 9 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:FucT-like 57 d2gj4a1 not modelled 50.3 8 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Oligosaccharide phosphorylase 58 d1qyia_ not modelled 49.4 8 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein MW1667 (SA1546) 59 c2r1zB_ not modelled 47.8 13 PDB header:antitumor protein Chain: B: PDB Molecule:brca1-associated ring domain protein 1; PDBTitle: crystal structure of the bard1 brct repeat 60 d1rcua_ not modelled 46.9 18 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 61 c1rcuB_ not modelled 46.9 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein vt76; PDBTitle: x-ray structure of tm1055 northeast structural genomics2 consortium target vt76 62 d1j5pa4 not modelled 43.9 10 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 63 d1oi7a2 not modelled 43.6 19 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 64 c2c4mA_ not modelled 42.1 9 PDB header:transferase Chain: A: PDB Molecule:glycogen phosphorylase; PDBTitle: starch phosphorylase: structural studies explain oxyanion-2 dependent kinetic stability and regulatory control. 65 c3ddsB_ not modelled 41.8 6 PDB header:transferase Chain: B: PDB Molecule:glycogen phosphorylase, liver form; PDBTitle: crystal structure of glycogen phosphorylase complexed with an2 anthranilimide based inhibitor gsk261 66 c1oi7A_ not modelled 40.7 19 PDB header:synthetase Chain: A: PDB Molecule:succinyl-coa synthetase alpha chain; PDBTitle: the crystal structure of succinyl-coa synthetase alpha2 subunit from thermus thermophilus 67 c1nj2A_ not modelled 40.7 10 PDB header:ligase Chain: A: PDB Molecule:proline-trna synthetase; PDBTitle: crystal structure of prolyl-trna synthetase from methanothermobacter2 thermautotrophicus 68 d1l5wa_ not modelled 37.5 6 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Oligosaccharide phosphorylase 69 c3bioB_ not modelled 30.0 8 PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of oxidoreductase (gfo/idh/moca family member) from2 porphyromonas gingivalis w83 70 d2atia1 not modelled 28.3 8 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Oligosaccharide phosphorylase 71 c3iruA_ not modelled 26.5 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phoshonoacetaldehyde hydrolase like protein; PDBTitle: crystal structure of phoshonoacetaldehyde hydrolase like protein from2 oleispira antarctica 72 c3gndC_ not modelled 26.4 14 PDB header:lyase Chain: C: PDB Molecule:aldolase lsrf; PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate 73 c3qvqB_ not modelled 23.9 11 PDB header:hydrolase Chain: B: PDB Molecule:phosphodiesterase olei02445; PDBTitle: the structure of an oleispira antarctica phosphodiesterase olei024452 in complex with the product sn-glycerol-3-phosphate 74 c2pz0B_ not modelled 22.5 11 PDB header:hydrolase Chain: B: PDB Molecule:glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of glycerophosphodiester phosphodiesterase (gdpd)2 from t. tengcongensis 75 d1ygpa_ not modelled 22.3 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Oligosaccharide phosphorylase 76 c2cokA_ not modelled 20.6 5 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase-1; PDBTitle: solution structure of brct domain of poly(adp-ribose)2 polymerase-1 77 c3s6jC_ not modelled 20.5 2 PDB header:hydrolase Chain: C: PDB Molecule:hydrolase, haloacid dehalogenase-like family; PDBTitle: the crystal structure of a hydrolase from pseudomonas syringae 78 d1x42a1 not modelled 19.1 16 Fold:HAD-like Superfamily:HAD-like Family:HAD-related 79 c1h4tD_ not modelled 19.0 7 PDB header:aminoacyl-trna synthetase Chain: D: PDB Molecule:prolyl-trna synthetase; PDBTitle: prolyl-trna synthetase from thermus thermophilus complexed2 with l-proline 80 c3no3A_ not modelled 18.9 14 PDB header:hydrolase Chain: A: PDB Molecule:glycerophosphodiester phosphodiesterase; PDBTitle: crystal structure of a glycerophosphodiester phosphodiesterase2 (bdi_0402) from parabacteroides distasonis atcc 8503 at 1.89 a3 resolution 81 d1euca2 not modelled 18.6 22 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 82 c1y6gB_ not modelled 18.5 10 PDB header:transferase/dna Chain: B: PDB Molecule:dna alpha-glucosyltransferase; PDBTitle: alpha-glucosyltransferase in complex with udp and a 13_mer2 dna containing a hmu base at 2.8 a resolution 83 d2gfha1 not modelled 17.5 17 Fold:HAD-like Superfamily:HAD-like Family:beta-Phosphoglucomutase-like 84 d1o1za_ not modelled 17.5 10 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Glycerophosphoryl diester phosphodiesterase 85 c2qjhH_ not modelled 17.3 18 PDB header:lyase Chain: H: PDB Molecule:putative aldolase mj0400; PDBTitle: m. jannaschii adh synthase covalently bound to2 dihydroxyacetone phosphate 86 d2csua2 not modelled 17.3 6 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 87 d1snna_ not modelled 16.8 16 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 88 d1nj8a1 not modelled 16.4 10 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 89 c1l0bA_ not modelled 15.3 12 PDB header:unknown function Chain: A: PDB Molecule:brca1; PDBTitle: crystal structure of rat brca1 tandem-brct region 90 c2vxcA_ not modelled 15.1 13 PDB header:cell cycle Chain: A: PDB Molecule:dna repair protein rhp9; PDBTitle: structure of the crb2-brct2 domain complex with2 phosphopeptide. 91 c2qtdA_ not modelled 14.9 12 PDB header:oxidoreductase Chain: A: PDB Molecule:uncharacterized protein mj0327; PDBTitle: crystal structure of a putative dinitrogenase (mj0327) from2 methanocaldococcus jannaschii dsm at 1.70 a resolution 92 c2p76H_ not modelled 14.9 11 PDB header:hydrolase Chain: H: PDB Molecule:glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of a glycerophosphodiester phosphodiesterase from2 staphylococcus aureus 93 c1zcoA_ not modelled 14.3 14 PDB header:lyase Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphoheptonate aldolase; PDBTitle: crystal structure of pyrococcus furiosus 3-deoxy-d-arabino-2 heptulosonate 7-phosphate synthase 94 c3l40A_ not modelled 14.1 17 PDB header:cell cycle Chain: A: PDB Molecule:brct-containing protein 1; PDBTitle: crystal structure of s. pombe brc1 brct5-brct6 domains 95 c2o55A_ not modelled 13.5 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative glycerophosphodiester phosphodiesterase; PDBTitle: crystal structure of a putative glycerophosphodiester2 phosphodiesterase from galdieria sulphuraria 96 c3esqA_ not modelled 13.3 5 PDB header:hydrolase Chain: A: PDB Molecule:d,d-heptose 1,7-bisphosphate phosphatase; PDBTitle: crystal structure of calcium-bound d,d-heptose 1.7-2 bisphosphate phosphatase from e. coli 97 d2gmwa1 not modelled 13.3 5 Fold:HAD-like Superfamily:HAD-like Family:Histidinol phosphatase-like 98 d2nu7a2 not modelled 13.0 25 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 99 c1nj8C_ not modelled 12.8 9 PDB header:ligase Chain: C: PDB Molecule:proline-trna synthetase; PDBTitle: crystal structure of prolyl-trna synthetase from2 methanocaldococcus janaschii

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0