Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP30852
DateThu Jan 5 11:46:33 GMT 2012
Unique Job ID13ce3bbfa301a435

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3majA_
Top template information
PDB header:dna binding protein
Chain: A: PDB Molecule:dna processing chain a;
PDBTitle: crystal structure of putative dna processing protein dpra from2 rhodopseudomonas palustris cga009
Confidence and coverage
Confidence:100.0% Coverage: 92%
344 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MVDTEIWLRLMSISSLYGDDMVRIAHWVAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSI
Secondary structure 
SS confidence 
Disorder  ???
?
??
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  ESSLCWLEQPNHHLIPADSEFYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSW
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  YGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVNGVSIAVLGNGLNTIHPRRHA
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  RLAASLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYS
Secondary structure 
SS confidence 
Disorder 
?????????????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  PDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVR
Secondary structure 
SS confidence 
Disorder  ?????????
?
Disorder confidence 
 
   .........370....
Sequence  LRRACHVRRTNVFV
Secondary structure 
SS confidence 
Disorder 
?
????
??
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3maj chain A

3D model

Region: 1 - 361
Aligned: 344
Modelled: 346
Confidence: 100.0%
Identity: 33%
PDB header:dna binding protein
Chain: A: PDB Molecule:dna processing chain a;
PDBTitle: crystal structure of putative dna processing protein dpra from2 rhodopseudomonas palustris cga009

Phyre2

PDB 2iz6 chain A

3D model

Region: 107 - 289
Aligned: 153
Modelled: 166
Confidence: 99.9%
Identity: 22%
PDB header:metal transport
Chain: A: PDB Molecule:molybdenum cofactor carrier protein;
PDBTitle: structure of the chlamydomonas rheinhardtii moco carrier2 protein

Phyre2

PDB 2nx2 chain A domain 1

3D model

Region: 108 - 251
Aligned: 143
Modelled: 144
Confidence: 99.9%
Identity: 15%
Fold: MCP/YpsA-like
Superfamily: MCP/YpsA-like
Family: YpsA-like

Phyre2

PDB 1wek chain A

3D model

Region: 97 - 283
Aligned: 167
Modelled: 167
Confidence: 99.9%
Identity: 23%
Fold: MCP/YpsA-like
Superfamily: MCP/YpsA-like
Family: MoCo carrier protein-like

Phyre2

PDB 1rcu chain B

3D model

Region: 110 - 283
Aligned: 150
Modelled: 153
Confidence: 99.9%
Identity: 17%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved hypothetical protein vt76;
PDBTitle: x-ray structure of tm1055 northeast structural genomics2 consortium target vt76

Phyre2

PDB 1rcu chain A

3D model

Region: 110 - 283
Aligned: 150
Modelled: 153
Confidence: 99.9%
Identity: 17%
Fold: MCP/YpsA-like
Superfamily: MCP/YpsA-like
Family: MoCo carrier protein-like

Phyre2

PDB 3sbx chain C

3D model

Region: 107 - 285
Aligned: 161
Modelled: 160
Confidence: 99.8%
Identity: 15%
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium marinum bound to adenosine 5'-monophosphate amp

Phyre2

PDB 1weh chain A

3D model

Region: 107 - 285
Aligned: 162
Modelled: 161
Confidence: 99.7%
Identity: 18%
Fold: MCP/YpsA-like
Superfamily: MCP/YpsA-like
Family: MoCo carrier protein-like

Phyre2

PDB 3qua chain A

3D model

Region: 106 - 283
Aligned: 160
Modelled: 160
Confidence: 99.7%
Identity: 16%
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein and possible2 molybdenum cofactor protein from mycobacterium smegmatis

Phyre2

PDB 1t35 chain A

3D model

Region: 107 - 284
Aligned: 155
Modelled: 175
Confidence: 98.6%
Identity: 20%
Fold: MCP/YpsA-like
Superfamily: MCP/YpsA-like
Family: MoCo carrier protein-like

Phyre2

PDB 2q4o chain A

3D model

Region: 108 - 284
Aligned: 149
Modelled: 150
Confidence: 98.6%
Identity: 16%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein at2g37210/t2n18.3;
PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at2g37210

Phyre2

PDB 2q4o chain A domain 1

3D model

Region: 108 - 284
Aligned: 149
Modelled: 150
Confidence: 98.6%
Identity: 16%
Fold: MCP/YpsA-like
Superfamily: MCP/YpsA-like
Family: MoCo carrier protein-like

Phyre2

PDB 1ydh chain A

3D model

Region: 108 - 284
Aligned: 157
Modelled: 173
Confidence: 98.4%
Identity: 14%
Fold: MCP/YpsA-like
Superfamily: MCP/YpsA-like
Family: MoCo carrier protein-like

Phyre2

PDB 2q4d chain B

3D model

Region: 108 - 284
Aligned: 157
Modelled: 174
Confidence: 98.3%
Identity: 13%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lysine decarboxylase-like protein at5g11950;
PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at5g11950

Phyre2

PDB 3imk chain A

3D model

Region: 140 - 250
Aligned: 95
Modelled: 96
Confidence: 97.1%
Identity: 24%
PDB header:metal binding protein
Chain: A: PDB Molecule:putative molybdenum carrier protein;
PDBTitle: crystal structure of putative molybdenum carrier protein (yp_461806.1)2 from syntrophus aciditrophicus sb at 1.45 a resolution

Phyre2

PDB 3bq9 chain A

3D model

Region: 110 - 166
Aligned: 57
Modelled: 57
Confidence: 96.5%
Identity: 16%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted rossmann fold nucleotide-binding domain-
PDBTitle: crystal structure of predicted nucleotide-binding protein from2 idiomarina baltica os145

Phyre2

PDB 1mkm chain A domain 1

3D model

Region: 312 - 361
Aligned: 50
Modelled: 50
Confidence: 96.3%
Identity: 20%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: Transcriptional regulator IclR, N-terminal domain

Phyre2

PDB 3gh1 chain A

3D model

Region: 108 - 166
Aligned: 59
Modelled: 59
Confidence: 96.3%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted nucleotide-binding protein;
PDBTitle: crystal structure of predicted nucleotide-binding protein from vibrio2 cholerae

Phyre2

PDB 1mkm chain A

3D model

Region: 312 - 361
Aligned: 50
Modelled: 50
Confidence: 96.2%
Identity: 20%
PDB header:transcription
Chain: A: PDB Molecule:iclr transcriptional regulator;
PDBTitle: crystal structure of the thermotoga maritima iclr

Phyre2

PDB 3tgn chain A

3D model

Region: 276 - 355
Aligned: 80
Modelled: 80
Confidence: 96.2%
Identity: 13%
PDB header:transcription
Chain: A: PDB Molecule:adc operon repressor adcr;
PDBTitle: crystal structure of the zinc-dependent marr family transcriptional2 regulator adcr in the zn(ii)-bound state

Phyre2

PDB 3eet chain A

3D model

Region: 323 - 374
Aligned: 52
Modelled: 51
Confidence: 89.2%
Identity: 17%
PDB header:transcription regulator
Chain: A: PDB Molecule:putative gntr-family transcriptional regulator;
PDBTitle: crystal structure of putative gntr-family transcriptional2 regulator

Phyre2
1
c3majA_
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c2iz6A_
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d2nx2a1
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d1weka_
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c1rcuB_
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d1rcua_
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c3sbxC_
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d1weha_
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c3quaA_
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d1t35a_
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c2q4oA_
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d2q4oa1
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d1ydha_
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c2q4dB_
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c3imkA_
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c3bq9A_
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d1mkma1
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c3gh1A_
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c1mkmA_
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c3tgnA_
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c3eetA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3majA_
100.0 33 PDB header:dna binding protein
Chain: A: PDB Molecule:dna processing chain a;
PDBTitle: crystal structure of putative dna processing protein dpra from2 rhodopseudomonas palustris cga009
2c2iz6A_
99.9 22 PDB header:metal transport
Chain: A: PDB Molecule:molybdenum cofactor carrier protein;
PDBTitle: structure of the chlamydomonas rheinhardtii moco carrier2 protein
3d2nx2a1
99.9 15 Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:YpsA-like
4d1weka_
99.9 23 Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
5c1rcuB_
99.9 17 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved hypothetical protein vt76;
PDBTitle: x-ray structure of tm1055 northeast structural genomics2 consortium target vt76
6d1rcua_
99.9 17 Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
7c3sbxC_
99.8 15 PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium marinum bound to adenosine 5'-monophosphate amp
8d1weha_
99.7 18 Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
9c3quaA_
99.7 16 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein and possible2 molybdenum cofactor protein from mycobacterium smegmatis
10d1t35a_
98.6 20 Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
11c2q4oA_
98.6 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein at2g37210/t2n18.3;
PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at2g37210
12d2q4oa1
98.6 16 Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
13d1ydha_
98.4 14 Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
14c2q4dB_
98.3 13 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lysine decarboxylase-like protein at5g11950;
PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at5g11950
15c3imkA_
97.1 24 PDB header:metal binding protein
Chain: A: PDB Molecule:putative molybdenum carrier protein;
PDBTitle: crystal structure of putative molybdenum carrier protein (yp_461806.1)2 from syntrophus aciditrophicus sb at 1.45 a resolution
16c3bq9A_
96.5 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted rossmann fold nucleotide-binding domain-
PDBTitle: crystal structure of predicted nucleotide-binding protein from2 idiomarina baltica os145
17d1mkma1
96.3 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator IclR, N-terminal domain
18c3gh1A_
96.3 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted nucleotide-binding protein;
PDBTitle: crystal structure of predicted nucleotide-binding protein from vibrio2 cholerae
19c1mkmA_
96.2 20 PDB header:transcription
Chain: A: PDB Molecule:iclr transcriptional regulator;
PDBTitle: crystal structure of the thermotoga maritima iclr
20c3tgnA_
96.2 13 PDB header:transcription
Chain: A: PDB Molecule:adc operon repressor adcr;
PDBTitle: crystal structure of the zinc-dependent marr family transcriptional2 regulator adcr in the zn(ii)-bound state
21d1ku9a_
not modelled 95.9 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DNA-binding protein Mj223
22c2g7uB_
not modelled 95.9 25 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1
23d1tw3a1
not modelled 95.9 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Plant O-methyltransferase, N-terminal domain
24d2d1ha1
not modelled 95.9 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
25d1sfxa_
not modelled 95.7 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
26c2it0A_
not modelled 95.7 18 PDB header:transcription/dna
Chain: A: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii
27c3r0aB_
not modelled 95.7 10 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: possible transcriptional regulator from methanosarcina mazei go1 (gi2 21227196)
28c2gxgA_
not modelled 95.5 15 PDB header:transcription
Chain: A: PDB Molecule:146aa long hypothetical transcriptional regulator;
PDBTitle: crystal structure of emrr homolog from hyperthermophilic archaea2 sulfolobus tokodaii strain7
29d2p4wa1
not modelled 95.4 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PF1790-like
30c1f5tA_
not modelled 95.4 18 PDB header:transcription/dna
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence
31c2o0yB_
not modelled 95.2 16 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator rha1_ro069532 (iclr-family) from rhodococcus sp.
32d2dk5a1
not modelled 95.2 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RPO3F domain-like
33c3i53A_
not modelled 95.2 15 PDB header:transferase
Chain: A: PDB Molecule:o-methyltransferase;
PDBTitle: crystal structure of an o-methyltransferase (ncsb1) from2 neocarzinostatin biosynthesis in complex with s-adenosyl-l-3 homocysteine (sah)
34c3r4kD_
not modelled 95.1 23 PDB header:dna binding protein
Chain: D: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution
35c3bj6B_
not modelled 95.1 13 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of marr family transcription regulator sp03579
36d1jhfa1
not modelled 95.1 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LexA repressor, N-terminal DNA-binding domain
37d1lnwa_
not modelled 95.0 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
38c2h09A_
not modelled 95.0 24 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator mntr;
PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli
39c2xroE_
not modelled 95.0 22 PDB header:dna-binding protein/dna
Chain: E: PDB Molecule:hth-type transcriptional regulator ttgv;
PDBTitle: crystal structure of ttgv in complex with its dna operator
40d2hr3a1
not modelled 95.0 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
41c2ip2B_
not modelled 95.0 10 PDB header:transferase
Chain: B: PDB Molecule:probable phenazine-specific methyltransferase;
PDBTitle: structure of the pyocyanin biosynthetic protein phzm
42d1okra_
not modelled 94.9 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
43c3kp3B_
not modelled 94.9 16 PDB header:transcription regulator/antibiotic
Chain: B: PDB Molecule:transcriptional regulator tcar;
PDBTitle: staphylococcus epidermidis in complex with ampicillin
44c2x4hA_
not modelled 94.9 15 PDB header:transcription
Chain: A: PDB Molecule:hypothetical protein sso2273;
PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus
45d1j5ya1
not modelled 94.8 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
46c1fx7C_
not modelled 94.8 17 PDB header:signaling protein
Chain: C: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis
47c3pqkD_
not modelled 94.8 18 PDB header:transcription
Chain: D: PDB Molecule:biofilm growth-associated repressor;
PDBTitle: crystal structure of the transcriptional repressor bigr from xylella2 fastidiosa
48c2wteB_
not modelled 94.8 15 PDB header:antiviral protein
Chain: B: PDB Molecule:csa3;
PDBTitle: the structure of the crispr-associated protein, csa3, from2 sulfolobus solfataricus at 1.8 angstrom resolution.
49d1r1ta_
not modelled 94.8 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
50c2rdpA_
not modelled 94.8 14 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator marr;
PDBTitle: the structure of a marr family protein from bacillus2 stearothermophilus
51d1dgsa1
not modelled 94.7 10 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:NAD+-dependent DNA ligase, domain 3
52c1tw3A_
not modelled 94.6 11 PDB header:transferase
Chain: A: PDB Molecule:carminomycin 4-o-methyltransferase;
PDBTitle: crystal structure of carminomycin-4-o-methyltransferase2 (dnrk) in complex with s-adenosyl-l-homocystein (sah) and3 4-methoxy-e-rhodomycin t (m-et)
53c3hruA_
not modelled 94.6 13 PDB header:transcription
Chain: A: PDB Molecule:metalloregulator scar;
PDBTitle: crystal structure of scar with bound zn2+
54c3g3zA_
not modelled 94.6 17 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis
55d3broa1
not modelled 94.6 6 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
56d1biaa1
not modelled 94.5 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
57c2l4aA_
not modelled 94.5 16 PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
58c1r22B_
not modelled 94.2 17 PDB header:transcription repressor
Chain: B: PDB Molecule:transcriptional repressor smtb;
PDBTitle: crystal structure of the cyanobacterial metallothionein2 repressor smtb (c14s/c61s/c121s mutant) in the zn2alpha5-3 form
59d1x2ia1
not modelled 94.1 7 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
60c2kkoB_
not modelled 94.1 17 PDB header:dna binding protein
Chain: B: PDB Molecule:possible transcriptional regulatory protein
PDBTitle: solution nmr structure of the homodimeric winged helix-turn-2 helix dna-binding domain (fragment 1-100) mb0332 from3 mycobacterium bovis, a possible arsr-family transcriptional4 regulator. northeast structural genomics consortium target5 mbr242e.
61c3jthA_
not modelled 94.1 8 PDB header:transcription
Chain: A: PDB Molecule:transcription activator hlyu;
PDBTitle: crystal structure of a transcriptional regulator hlyu from2 vibrio vulnificus cmcp6
62d2fxaa1
not modelled 94.1 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
63c2fa5B_
not modelled 94.0 16 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator marr/emrr family;
PDBTitle: the crystal structure of an unliganded multiple antibiotic-2 resistance repressor (marr) from xanthomonas campestris
64d2a61a1
not modelled 94.0 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
65c3nqoB_
not modelled 94.0 15 PDB header:transcription
Chain: B: PDB Molecule:marr-family transcriptional regulator;
PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution
66c3bpxB_
not modelled 93.9 17 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of marr
67d1qzza1
not modelled 93.9 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Plant O-methyltransferase, N-terminal domain
68c3cuoB_
not modelled 93.9 12 PDB header:transcription regulator
Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav;
PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli
69c3f6oB_
not modelled 93.8 21 PDB header:transcription regulator
Chain: B: PDB Molecule:probable transcriptional regulator, arsr family
PDBTitle: crystal structure of arsr family transcriptional regulator,2 rha00566
70c2qwwB_
not modelled 93.8 8 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution
71d2bgwa1
not modelled 93.8 11 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
72c1kftA_
not modelled 93.8 9 PDB header:dna binding protein
Chain: A: PDB Molecule:excinuclease abc subunit c;
PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli
73d1kfta_
not modelled 93.8 9 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Excinuclease UvrC C-terminal domain
74c2oqgA_
not modelled 93.8 21 PDB header:transcription
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family protein;
PDBTitle: arsr-like transcriptional regulator from rhodococcus sp. rha1
75c1x1aA_
not modelled 93.8 16 PDB header:transferase
Chain: A: PDB Molecule:crtf-related protein;
PDBTitle: crystal structure of bchu complexed with s-adenosyl-l-methionine
76d2cyya1
not modelled 93.7 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
77d1s3ja_
not modelled 93.7 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
78c2nyxB_
not modelled 93.7 15 PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404;
PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis
79c3cjnA_
not modelled 93.7 13 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of transcriptional regulator, marr family, from2 silicibacter pomeroyi
80c2jscB_
not modelled 93.6 19 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator rv1994c/mt2050;
PDBTitle: nmr structure of the cadmium metal-sensor cmtr from mycobacterium2 tuberculosis
81d1sd4a_
not modelled 93.6 5 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
82d2cfxa1
not modelled 93.6 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
83d2cg4a1
not modelled 93.6 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
84c3f3xA_
not modelled 93.6 14 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family, putative;
PDBTitle: crystal structure of the transcriptional regulator bldr2 from sulfolobus solfataricus
85c3nrvC_
not modelled 93.6 12 PDB header:transcription regulator
Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family);
PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1
86c3oopA_
not modelled 93.5 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin2960 protein;
PDBTitle: the structure of a protein with unknown function from listeria innocua2 clip11262
87d2fbia1
not modelled 93.5 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
88d2fbha1
not modelled 93.5 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
89c2nnnB_
not modelled 93.5 11 PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulator;
PDBTitle: crystal structure of probable transcriptional regulator from2 pseudomonas aeruginosa
90c3mq0A_
not modelled 93.4 17 PDB header:transcription repressor
Chain: A: PDB Molecule:transcriptional repressor of the blcabc operon;
PDBTitle: crystal structure of agobacterium tumefaciens repressor blcr
91c3f6vA_
not modelled 93.4 18 PDB header:transcription regulator
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family
PDBTitle: crystal structure of possible transcriptional regulator for2 arsenical resistance
92c3hrmA_
not modelled 93.4 18 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator sarz;
PDBTitle: crystal structure of staphylococcus aureus protein sarz in sulfenic2 acid form
93c2r3sA_
not modelled 93.4 10 PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative o-methyltransferase (npun_r0239) from2 nostoc punctiforme pcc 73102 at 2.15 a resolution
94d2frha1
not modelled 93.2 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
95c2qufB_
not modelled 93.2 10 PDB header:transcription
Chain: B: PDB Molecule:transcription factor pf0095;
PDBTitle: crystal structure of transcription factor axxa-pf0095 from pyrococcus2 furiosus
96c3bjaA_
not modelled 93.2 10 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, marr family, putative;
PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution
97c3bddD_
not modelled 93.2 22 PDB header:transcription
Chain: D: PDB Molecule:regulatory protein marr;
PDBTitle: crystal structure of a putative multiple antibiotic-resistance2 repressor (ssu05_1136) from streptococcus suis 89/1591 at 2.20 a3 resolution
98d1ulya_
not modelled 93.2 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Hypothetical protein PH1932
99d1p4xa2
not modelled 93.1 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
100d1r1ua_
not modelled 93.1 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
101c2fxaB_
not modelled 93.1 13 PDB header:transcription
Chain: B: PDB Molecule:protease production regulatory protein hpr;
PDBTitle: structure of the protease production regulatory protein hpr from2 bacillus subtilis.
102c3k0lA_
not modelled 93.0 23 PDB header:transcription regulator
Chain: A: PDB Molecule:repressor protein;
PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp
103d2bv6a1
not modelled 93.0 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
104d1stza1
not modelled 92.9 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Heat-inducible transcription repressor HrcA, N-terminal domain
105c3lstB_
not modelled 92.9 11 PDB header:transferase
Chain: B: PDB Molecule:calo1 methyltransferase;
PDBTitle: crystal structure of calo1, methyltransferase in calicheamicin2 biosynthesis, sah bound form
106c1g3wA_
not modelled 92.8 16 PDB header:gene regulation
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: cd-cys102ser dtxr
107d1i1ga1
not modelled 92.8 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
108d1p6ra_
not modelled 92.5 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
109d2isya1
not modelled 92.5 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
110c3e6mD_
not modelled 92.4 15 PDB header:transcription regulator
Chain: D: PDB Molecule:marr family transcriptional regulator;
PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss.
111d2etha1
not modelled 92.4 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
112d1z6ra1
not modelled 92.2 6 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ROK associated domain
113c3cdhB_
not modelled 92.0 16 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of the marr family transcriptional regulator spo14532 from silicibacter pomeroyi dss-3
114d2aq0a1
not modelled 91.9 9 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
115c2k4bA_
not modelled 91.9 15 PDB header:dna binding protein
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: copr repressor structure
116d1ub9a_
not modelled 91.9 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
117c2vbzA_
not modelled 91.8 23 PDB header:dna-binding protein
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan
118d3ctaa1
not modelled 91.8 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
119d1g3wa1
not modelled 91.8 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
120d1lj9a_
not modelled 91.8 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0