Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP33030
DateThu Jan 5 11:51:08 GMT 2012
Unique Job ID1095289fe00138b1

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1nijA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yjia;
PDBTitle: yjia protein
Confidence and coverage
Confidence:100.0% Coverage: 91%
297 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTRTNLITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFGEVGIDGALLADSGALLKEIP
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Disorder  ??

























































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   .........70.........80.........90.........100.........110.........120
Sequence  GGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQILDLLTAPVYEPWIDLRATL
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   .........130.........140.........150.........160.........170.........180
Sequence  CILDPRLLLDEKSASNENFRDQLAAADIIVANKSDRTTPESEQALQRWWQQNGGDRQLIH
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   .........190.........200.........210.........220.........230.........240
Sequence  SEHGKVDGHLLDLPRRNLAELPASAAHSHQHVVKKGLAALSLPEHQRWRRSLNSGQGYQA
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Disorder 















??????????????????



















?




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   .........250.........260.........270.........280.........290.........300
Sequence  CGWIFDADTVFDTIGILEWARLAPVERVKGVLRIPEGLVRINRQGDDLHIETQNVAPPDS
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??




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   .........310.........320........
Sequence  RIELISSSEADWNALQSALLKLRLATTA
Secondary structure 












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Disorder 




















???????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1nij chain A

3D model

Region: 2 - 323
Aligned: 297
Modelled: 302
Confidence: 100.0%
Identity: 25%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yjia;
PDBTitle: yjia protein

Phyre2

PDB 1nij chain A domain 1

3D model

Region: 2 - 218
Aligned: 213
Modelled: 217
Confidence: 100.0%
Identity: 29%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 2hf9 chain A

3D model

Region: 2 - 182
Aligned: 165
Modelled: 171
Confidence: 99.7%
Identity: 18%
PDB header:hydrolase, metal binding protein
Chain: A: PDB Molecule:probable hydrogenase nickel incorporation
PDBTitle: crystal structure of hypb from methanocaldococcus2 jannaschii in the triphosphate form

Phyre2

PDB 1nij chain A domain 2

3D model

Region: 240 - 323
Aligned: 83
Modelled: 84
Confidence: 99.7%
Identity: 16%
Fold: Hypothetical protein YjiA, C-terminal domain
Superfamily: Hypothetical protein YjiA, C-terminal domain
Family: Hypothetical protein YjiA, C-terminal domain

Phyre2

PDB 2wsm chain B

3D model

Region: 2 - 182
Aligned: 147
Modelled: 164
Confidence: 99.5%
Identity: 19%
PDB header:metal binding protein
Chain: B: PDB Molecule:hydrogenase expression/formation protein (hypb);
PDBTitle: crystal structure of hydrogenase maturation factor hypb from2 archaeoglobus fulgidus

Phyre2

PDB 3nxs chain A

3D model

Region: 3 - 182
Aligned: 160
Modelled: 176
Confidence: 99.5%
Identity: 21%
PDB header:transport protein
Chain: A: PDB Molecule:lao/ao transport system atpase;
PDBTitle: crystal structure of lao/ao transport system from mycobacterium2 smegmatis bound to gdp

Phyre2

PDB 1yrb chain A domain 1

3D model

Region: 4 - 172
Aligned: 167
Modelled: 169
Confidence: 99.5%
Identity: 20%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 2qm8 chain A domain 1

3D model

Region: 3 - 168
Aligned: 145
Modelled: 146
Confidence: 99.3%
Identity: 26%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 2f1r chain A

3D model

Region: 4 - 125
Aligned: 117
Modelled: 122
Confidence: 99.3%
Identity: 15%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis
PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb)

Phyre2

PDB 1qzx chain A domain 3

3D model

Region: 3 - 181
Aligned: 175
Modelled: 179
Confidence: 99.2%
Identity: 14%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 3md0 chain A

3D model

Region: 3 - 182
Aligned: 152
Modelled: 161
Confidence: 99.1%
Identity: 22%
PDB header:transport protein
Chain: A: PDB Molecule:arginine/ornithine transport system atpase;
PDBTitle: crystal structure of arginine/ornithine transport system2 atpase from mycobacterium tuberculosis bound to gdp (a ras-3 like gtpase superfamily protein)

Phyre2

PDB 3dmd chain A

3D model

Region: 3 - 158
Aligned: 141
Modelled: 147
Confidence: 99.1%
Identity: 19%
PDB header:transport protein
Chain: A: PDB Molecule:signal recognition particle receptor;
PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus

Phyre2

PDB 2p67 chain A domain 1

3D model

Region: 3 - 182
Aligned: 149
Modelled: 149
Confidence: 99.1%
Identity: 19%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 1ls1 chain A domain 2

3D model

Region: 3 - 191
Aligned: 178
Modelled: 189
Confidence: 99.0%
Identity: 17%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 2cnw chain F

3D model

Region: 3 - 158
Aligned: 150
Modelled: 156
Confidence: 99.0%
Identity: 16%
PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy

Phyre2

PDB 3dm5 chain A

3D model

Region: 3 - 155
Aligned: 145
Modelled: 151
Confidence: 99.0%
Identity: 16%
PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.

Phyre2

PDB 1zu4 chain A

3D model

Region: 3 - 158
Aligned: 153
Modelled: 156
Confidence: 98.9%
Identity: 16%
PDB header:protein transport
Chain: A: PDB Molecule:ftsy;
PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212

Phyre2

PDB 2j7p chain A

3D model

Region: 3 - 158
Aligned: 149
Modelled: 156
Confidence: 98.9%
Identity: 18%
PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy

Phyre2

PDB 2iy3 chain A

3D model

Region: 3 - 155
Aligned: 145
Modelled: 153
Confidence: 98.8%
Identity: 19%
PDB header:rna-binding
Chain: A: PDB Molecule:signal recognition particle protein ffh;
PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome

Phyre2

PDB 2www chain B

3D model

Region: 3 - 171
Aligned: 123
Modelled: 153
Confidence: 98.8%
Identity: 20%
PDB header:transport protein
Chain: B: PDB Molecule:methylmalonic aciduria type a protein,
PDBTitle: crystal structure of methylmalonic acidemia type a protein

Phyre2
1

c1nijA_
2

d1nija1
3

c2hf9A_
4

d1nija2
5

c2wsmB_
6

c3nxsA_
7

d1yrba1
8

d2qm8a1
9

c2f1rA_
10

d1qzxa3
11

c3md0A_
12

c3dmdA_
13

d2p67a1
14

d1ls1a2
15

c2cnwF_
16

c3dm5A_
17

c1zu4A_
18

c2j7pA_
19

c2iy3A_
20

c2wwwB_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1nijA_



100.0 25 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yjia;
PDBTitle: yjia protein
2d1nija1



100.0 29 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
3c2hf9A_



99.7 18 PDB header:hydrolase, metal binding protein
Chain: A: PDB Molecule:probable hydrogenase nickel incorporation
PDBTitle: crystal structure of hypb from methanocaldococcus2 jannaschii in the triphosphate form
4d1nija2



99.7 16 Fold:Hypothetical protein YjiA, C-terminal domain
Superfamily:Hypothetical protein YjiA, C-terminal domain
Family:Hypothetical protein YjiA, C-terminal domain
5c2wsmB_



99.5 19 PDB header:metal binding protein
Chain: B: PDB Molecule:hydrogenase expression/formation protein (hypb);
PDBTitle: crystal structure of hydrogenase maturation factor hypb from2 archaeoglobus fulgidus
6c3nxsA_



99.5 21 PDB header:transport protein
Chain: A: PDB Molecule:lao/ao transport system atpase;
PDBTitle: crystal structure of lao/ao transport system from mycobacterium2 smegmatis bound to gdp
7d1yrba1



99.5 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
8d2qm8a1



99.3 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
9c2f1rA_



99.3 15 PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis
PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb)
10d1qzxa3



99.2 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
11c3md0A_



99.1 22 PDB header:transport protein
Chain: A: PDB Molecule:arginine/ornithine transport system atpase;
PDBTitle: crystal structure of arginine/ornithine transport system2 atpase from mycobacterium tuberculosis bound to gdp (a ras-3 like gtpase superfamily protein)
12c3dmdA_



99.1 19 PDB header:transport protein
Chain: A: PDB Molecule:signal recognition particle receptor;
PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus
13d2p67a1



99.1 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
14d1ls1a2



99.0 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
15c2cnwF_



99.0 16 PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
16c3dm5A_



99.0 16 PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
17c1zu4A_



98.9 16 PDB header:protein transport
Chain: A: PDB Molecule:ftsy;
PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212
18c2j7pA_



98.9 18 PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
19c2iy3A_



98.8 19 PDB header:rna-binding
Chain: A: PDB Molecule:signal recognition particle protein ffh;
PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
20c2wwwB_



98.8 20 PDB header:transport protein
Chain: B: PDB Molecule:methylmalonic aciduria type a protein,
PDBTitle: crystal structure of methylmalonic acidemia type a protein
21d1vmaa2



not modelled 98.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
22c2yhsA_



not modelled 98.8 15 PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the e. coli srp receptor ftsy
23c2v3cC_



not modelled 98.8 17 PDB header:signaling protein
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii
24c2qy9A_



not modelled 98.8 15 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy
25c3b9qA_



not modelled 98.7 16 PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
26c2og2A_



not modelled 98.7 17 PDB header:protein transport
Chain: A: PDB Molecule:putative signal recognition particle receptor;
PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
27c2j37W_



not modelled 98.7 11 PDB header:ribosome
Chain: W: PDB Molecule:signal recognition particle 54 kda protein
PDBTitle: model of mammalian srp bound to 80s rncs
28d2qy9a2



not modelled 98.7 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
29c1vmaA_



not modelled 98.7 16 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
30d1okkd2



not modelled 98.5 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
31c2e87A_



not modelled 98.5 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1320;
PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp
32c2qptA_



not modelled 98.5 19 PDB header:endocytosis
Chain: A: PDB Molecule:eh domain-containing protein-2;
PDBTitle: crystal structure of an ehd atpase involved in membrane remodelling
33d1xjca_



not modelled 98.4 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
34c2px0D_



not modelled 98.4 15 PDB header:biosynthetic protein
Chain: D: PDB Molecule:flagellar biosynthesis protein flhf;
PDBTitle: crystal structure of flhf complexed with gmppnp/mg(2+)
35c2gzaB_



not modelled 98.3 27 PDB header:hydrolase
Chain: B: PDB Molecule:type iv secretion system protein virb11;
PDBTitle: crystal structure of the virb11 atpase from the brucella suis type iv2 secretion system in complex with sulphate
36c1qzwC_



not modelled 98.3 16 PDB header:signaling protein/rna
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication
37c1egaB_



not modelled 98.3 13 PDB header:hydrolase
Chain: B: PDB Molecule:protein (gtp-binding protein era);
PDBTitle: crystal structure of a widely conserved gtpase era
38c2qthA_



not modelled 98.3 16 PDB header:nucleotide binding protein
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp
39d1g6oa_



not modelled 98.3 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
40c1wb1C_



not modelled 98.2 19 PDB header:protein synthesis
Chain: C: PDB Molecule:translation elongation factor selb;
PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp
41c2j289_



not modelled 98.2 19 PDB header:ribosome
Chain: 9: PDB Molecule:signal recognition particle 54;
PDBTitle: model of e. coli srp bound to 70s rncs
42c2qa5A_



not modelled 98.2 17 PDB header:cell cycle, structural protein
Chain: A: PDB Molecule:septin-2;
PDBTitle: crystal structure of sept2 g-domain
43c2gedB_



not modelled 98.1 18 PDB header:protein transport, signaling protein
Chain: B: PDB Molecule:signal recognition particle receptor beta
PDBTitle: signal recognition particle receptor beta-subunit in2 nucleotide-free dimerized form
44c2oaq1_



not modelled 98.1 22 PDB header:hydrolase
Chain: 1: PDB Molecule:type ii secretion system protein;
PDBTitle: crystal structure of the archaeal secretion atpase gspe in complex2 with phosphate
45c1kk3A_



not modelled 98.1 16 PDB header:translation
Chain: A: PDB Molecule:eif2gamma;
PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+
46d1np6a_



not modelled 98.0 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
47c1d2eA_



not modelled 98.0 11 PDB header:rna binding protein
Chain: A: PDB Molecule:elongation factor tu (ef-tu);
PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp
48c3t5dC_



not modelled 98.0 19 PDB header:signaling protein
Chain: C: PDB Molecule:septin-7;
PDBTitle: crystal structure of septin 7 in complex with gdp
49c2plfA_



not modelled 97.9 16 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit;
PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form.
50c3jvvA_



not modelled 97.9 23 PDB header:atp binding protein
Chain: A: PDB Molecule:twitching mobility protein;
PDBTitle: crystal structure of p. aeruginosa pilt with bound amp-pcp
51c2qagB_



not modelled 97.9 23 PDB header:cell cycle, structural protein
Chain: B: PDB Molecule:septin-6;
PDBTitle: crystal structure of human septin trimer 2/6/7
52c1wf3A_



not modelled 97.9 14 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of gtp-binding protein tt1341 from thermus2 thermophilus hb8
53d1p9ra_



not modelled 97.9 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
54c3gehA_



not modelled 97.8 17 PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn
55c2bvnB_



not modelled 97.8 11 PDB header:elongation factor
Chain: B: PDB Molecule:elongation factor tu;
PDBTitle: e. coli ef-tu:gdpnp in complex with the antibiotic2 enacyloxin iia
56c3k53B_



not modelled 97.8 19 PDB header:metal transport
Chain: B: PDB Molecule:ferrous iron transport protein b;
PDBTitle: crystal structure of nfeob from p. furiosus
57c3ftqA_



not modelled 97.8 19 PDB header:cell cycle
Chain: A: PDB Molecule:septin-2;
PDBTitle: crystal structure of septin 2 in complex with gppnhp and2 mg2+
58d2c78a3



not modelled 97.8 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
59c1mkyA_



not modelled 97.8 20 PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains
60d2dy1a2



not modelled 97.8 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
61c2qagC_



not modelled 97.8 23 PDB header:cell cycle, structural protein
Chain: C: PDB Molecule:septin-7;
PDBTitle: crystal structure of human septin trimer 2/6/7
62c2xtpA_



not modelled 97.8 13 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of nucleotide-free human gimap2, amino2 acid residues 1-260
63c1xzqA_



not modelled 97.8 23 PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf
64c3lx8A_



not modelled 97.7 18 PDB header:metal transport
Chain: A: PDB Molecule:ferrous iron uptake transporter protein b;
PDBTitle: crystal structure of gdp-bound nfeob from s. thermophilus
65c1s0uA_



not modelled 97.7 13 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit;
PDBTitle: eif2gamma apo
66d1u94a1



not modelled 97.7 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
67c2gszE_



not modelled 97.7 21 PDB header:protein transport
Chain: E: PDB Molecule:twitching motility protein pilt;
PDBTitle: structure of a. aeolicus pilt with 6 monomers per2 asymmetric unit
68c1mj1A_



not modelled 97.7 15 PDB header:ribosome
Chain: A: PDB Molecule:elongation factor tu;
PDBTitle: fitting the ternary complex of ef-tu/trna/gtp and ribosomal proteins2 into a 13 a cryo-em map of the coli 70s ribosome
69c2qagA_



not modelled 97.7 18 PDB header:cell cycle, structural protein
Chain: A: PDB Molecule:septin-2;
PDBTitle: crystal structure of human septin trimer 2/6/7
70d1ubea1



not modelled 97.7 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
71c1udxA_



not modelled 97.7 16 PDB header:protein binding
Chain: A: PDB Molecule:the gtp-binding protein obg;
PDBTitle: crystal structure of the conserved protein tt1381 from thermus2 thermophilus hb8
72c1lnzA_



not modelled 97.7 25 PDB header:cell cycle
Chain: A: PDB Molecule:spo0b-associated gtp-binding protein;
PDBTitle: structure of the obg gtp-binding protein
73c1g7tA_



not modelled 97.7 17 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if2/eif5b;
PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp
74d1mo6a1



not modelled 97.7 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
75c3la6P_



not modelled 97.7 19 PDB header:transferase
Chain: P: PDB Molecule:tyrosine-protein kinase wzc;
PDBTitle: octameric kinase domain of the e. coli tyrosine kinase wzc with bound2 adp
76c2recB_



not modelled 97.6 23 PDB header:helicase
PDB COMPND:
77c2eyuA_



not modelled 97.6 21 PDB header:protein transport
Chain: A: PDB Molecule:twitching motility protein pilt;
PDBTitle: the crystal structure of the c-terminal domain of aquifex2 aeolicus pilt
78c2h5eB_



not modelled 97.6 17 PDB header:translation
Chain: B: PDB Molecule:peptide chain release factor rf-3;
PDBTitle: crystal structure of e.coli polypeptide release factor rf3
79c3ievA_



not modelled 97.6 16 PDB header:nucleotide binding protein/rna
Chain: A: PDB Molecule:gtp-binding protein era;
PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna
80c2ywfA_



not modelled 97.6 19 PDB header:translation
Chain: A: PDB Molecule:gtp-binding protein lepa;
PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus
81c2zroA_



not modelled 97.6 24 PDB header:hydrolase
Chain: A: PDB Molecule:protein reca;
PDBTitle: msreca adp form iv
82c2elfA_



not modelled 97.6 23 PDB header:translation
Chain: A: PDB Molecule:protein translation elongation factor 1a;
PDBTitle: crystal structure of the selb-like elongation factor ef-pyl2 from methanosarcina mazei
83c3hr8A_



not modelled 97.6 22 PDB header:recombination
Chain: A: PDB Molecule:protein reca;
PDBTitle: crystal structure of thermotoga maritima reca
84c2vyeA_



not modelled 97.6 16 PDB header:hydrolase
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: crystal structure of the dnac-ssdna complex
85c3cioA_



not modelled 97.6 13 PDB header:signaling protein, transferase
Chain: A: PDB Molecule:tyrosine-protein kinase etk;
PDBTitle: the kinase domain of escherichia coli tyrosine kinase etk
86c1zo1I_



not modelled 97.5 12 PDB header:translation/rna
Chain: I: PDB Molecule:translation initiation factor 2;
PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex
87c3mcaA_



not modelled 97.5 17 PDB header:translation regulation/hydrolase
Chain: A: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay
88d2fh5b1



not modelled 97.5 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
89c2hjgA_



not modelled 97.5 12 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein enga;
PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp
90d1f60a3



not modelled 97.5 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
91d2bv3a2



not modelled 97.5 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
92d1xp8a1



not modelled 97.5 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
93c2vedA_



not modelled 97.5 9 PDB header:transferase
Chain: A: PDB Molecule:membrane protein capa1, protein tyrosine kinase;
PDBTitle: crystal structure of the chimerical mutant capabk55m2 protein
94c3p1jC_



not modelled 97.4 10 PDB header:hydrolase
Chain: C: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of human gtpase imap family member 2 in the2 nucleotide-free state
95c1xp8A_



not modelled 97.4 22 PDB header:dna binding protein
Chain: A: PDB Molecule:reca protein;
PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s"
96c3lxxA_



not modelled 97.4 12 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 4;
PDBTitle: crystal structure of human gtpase imap family member 4
97c2q3fB_



not modelled 97.4 16 PDB header:protein binding
Chain: B: PDB Molecule:ras-related gtp-binding protein d;
PDBTitle: x-ray crystal structure of putative human ras-related gtp2 binding d in complex with gmppnp
98c3tr5C_



not modelled 97.4 17 PDB header:translation
Chain: C: PDB Molecule:peptide chain release factor 3;
PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii
99d1puia_



not modelled 97.4 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
100c2ja1A_



not modelled 97.4 17 PDB header:transferase
Chain: A: PDB Molecule:thymidine kinase;
PDBTitle: thymidine kinase from b. cereus with ttp bound as phosphate2 donor.
101c3lxwA_



not modelled 97.4 12 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 1;
PDBTitle: crystal structure of human gtpase imap family member 1
102d1zunb3



not modelled 97.4 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
103c2q6tB_



not modelled 97.3 13 PDB header:hydrolase
Chain: B: PDB Molecule:dnab replication fork helicase;
PDBTitle: crystal structure of the thermus aquaticus dnab monomer
104c3r7wC_



not modelled 97.3 15 PDB header:protein transport
Chain: C: PDB Molecule:gtp-binding protein gtr1;
PDBTitle: crystal structure of gtr1p-gtr2p complex
105c1jalA_



not modelled 97.3 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ychf protein;
PDBTitle: ychf protein (hi0393)
106c2xexA_



not modelled 97.3 18 PDB header:translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g
107c2bm0A_



not modelled 97.3 21 PDB header:elongation factor
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a
108d1g3qa_



not modelled 97.3 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
109c2dy1A_



not modelled 97.3 19 PDB header:signaling protein, translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of ef-g-2 from thermus thermophilus
110c2xtnA_



not modelled 97.3 9 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of gtp-bound human gimap2, amino acid2 residues 1-234
111c1xx6B_



not modelled 97.3 15 PDB header:transferase
Chain: B: PDB Molecule:thymidine kinase;
PDBTitle: x-ray structure of clostridium acetobutylicum thymidine kinase with2 adp. northeast structural genomics target car26.
112d1svia_



not modelled 97.3 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
113c3mmpC_



not modelled 97.2 14 PDB header:transferase
Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts;
PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins
114c1skqB_



not modelled 97.2 17 PDB header:translation
Chain: B: PDB Molecule:elongation factor 1-alpha;
PDBTitle: the crystal structure of sulfolobus solfataricus elongation2 factor 1-alpha in complex with magnesium and gdp
115d1qhxa_



not modelled 97.2 30 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Chloramphenicol phosphotransferase
116c3degC_



not modelled 97.2 14 PDB header:ribosome
Chain: C: PDB Molecule:gtp-binding protein lepa;
PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp
117c3cmvG_



not modelled 97.2 23 PDB header:recombination
Chain: G: PDB Molecule:protein reca;
PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures
118d1tf7a2



not modelled 97.2 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
119d1ihua2



not modelled 97.2 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
120c2ztsB_



not modelled 97.2 20 PDB header:atp-binding protein
Chain: B: PDB Molecule:putative uncharacterized protein ph0186;
PDBTitle: crystal structure of kaic-like protein ph0186 from2 hyperthermophilic archaea pyrococcus horikoshii ot3

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0