Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP76017
DateThu Jan 5 12:17:29 GMT 2012
Unique Job ID10122e2f87dec11c

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3sljA_
Top template information
PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant
Confidence and coverage
Confidence:100.0% Coverage: 31%
292 residues ( 31% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
826 residues ( 86%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MGIKQHNGNTKADRLAELKIRSPSIQLIKFGAIGLNAIIFSPLLIAADTGSQYGTNITIN
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   .........70.........80.........90.........100.........110.........120
Sequence  DGDRITGDTADPSGNLYGVMTPAGNTPGNINLGNDVTVNVNDASGYAKGIIIQGKNSSLT
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   .........130.........140.........150.........160.........170.........180
Sequence  ANRLTVDVVGQTSAIGINLIGDYTHADLGTGSTIKSNDDGIIIGHSSTLTATQFTIENSN
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   .........190.........200.........210.........220.........230.........240
Sequence  GIGLTINDYGTSVDLGSGSKITTDGSTGVYIGGLNGNNANGAARFTATDLTIDVQGYSAM
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   .........250.........260.........270.........280.........290.........300
Sequence  GINVQKNSVVDLGTNSTIKTNGDNAHGLWSFGQVSANALTVDVTGAAANGVEVRGGTTTI
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   .........310.........320.........330.........340.........350.........360
Sequence  GADSHISSAQGGGLVTSGSDAIINFTGTAAQRNSIFSGGSYGASAQTATAVVNMQNTDIT
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   .........370.........380.........390.........400.........410.........420
Sequence  VDRNGSLALGLWALSGGRITGDSLAITGAAGARGIYAMTNSQIDLTSDLVIDMSTPDQMA
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   .........430.........440.........450.........460.........470.........480
Sequence  IATQHDDGYAASRINASGRMLINGSVLSKGGLINLDMHPGSVWTGSSLSDNVNGGKLDVA
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   .........490.........500.........510.........520.........530.........540
Sequence  MNNSVWNVTSNSNLDTLALSHSTVDFASHGSTAGTFATLNVENLSGNSTFIMRADVVGEG
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   .........550.........560.........570.........580.........590.........600
Sequence  NGVNNKGDLLNISGSSAGNHVLAIRNQGSEATTGNEVLTVVKTTDGAASFSASSQVELGG
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   .........610.........620.........630.........640.........650.........660
Sequence  YLYDVRKNGTNWELYASGTVPEPTPNPEPTPAPAQPPIVNPDPTPEPAPTPKPTTTADAG
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   .........670.........680.........690.........700.........710.........720
Sequence  GNYLNVGYLLNYVENRTLMQRMGDLRNQSKDGNIWLRSYGGSLDSFASGKLSGFDMGYSG
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   .........730.........740.........750.........760.........770.........780
Sequence  IQFGGDKRLSDVMPLYVGLYIGSTHASPDYSGGDGTARSDYMGMYASYMAQNGFYSDLVI
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   .........790.........800.........810.........820.........830.........840
Sequence  KASRQKNSFHVLDSQNNGVNANGTANGMSISLEAGQRFNLSPTGYGFYIEPQTQLTYSHQ
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   .........850.........860.........870.........880.........890.........900
Sequence  NEMTMKASNGLNIHLNHYESLLGRASMILGYDITAGNSQLNVYVKTGAIREFSGDTEYLL
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   .........910.........920.........930.........940.........950.....
Sequence  NNSREKYSFKGNGWNNGVGVSAQYNKQHTFYLEADYTQGNLFDQKQVNGGYRFSF
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3slj chain A

3D model

Region: 654 - 955
Aligned: 292
Modelled: 302
Confidence: 100.0%
Identity: 24%
PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant

Phyre2

PDB 3aeh chain B

3D model

Region: 650 - 955
Aligned: 271
Modelled: 294
Confidence: 100.0%
Identity: 25%
PDB header:hydrolase
Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter;
PDBTitle: integral membrane domain of autotransporter hbp

Phyre2

PDB 3kvn chain A

3D model

Region: 656 - 955
Aligned: 295
Modelled: 300
Confidence: 100.0%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:esterase esta;
PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa

Phyre2

PDB 1uyn chain X

3D model

Region: 670 - 955
Aligned: 267
Modelled: 286
Confidence: 100.0%
Identity: 13%
Fold: Transmembrane beta-barrels
Superfamily: Autotransporter
Family: Autotransporter

Phyre2

PDB 3qq2 chain C

3D model

Region: 691 - 955
Aligned: 243
Modelled: 265
Confidence: 100.0%
Identity: 26%
PDB header:membrane protein/protein transport
Chain: C: PDB Molecule:brka autotransporter;
PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka

Phyre2

PDB 2qom chain B

3D model

Region: 678 - 955
Aligned: 261
Modelled: 278
Confidence: 100.0%
Identity: 26%
PDB header:hydrolase
Chain: B: PDB Molecule:serine protease espp;
PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain.

Phyre2

PDB 1dab chain A

3D model

Region: 65 - 621
Aligned: 526
Modelled: 526
Confidence: 99.4%
Identity: 17%
Fold: Single-stranded right-handed beta-helix
Superfamily: Pectin lyase-like
Family: Virulence factor P.69 pertactin

Phyre2

PDB 1g90 chain A

3D model

Region: 770 - 955
Aligned: 160
Modelled: 182
Confidence: 99.4%
Identity: 21%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 2k0l chain A

3D model

Region: 770 - 955
Aligned: 169
Modelled: 186
Confidence: 99.3%
Identity: 18%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.

Phyre2

PDB 3qra chain A

3D model

Region: 738 - 955
Aligned: 147
Modelled: 162
Confidence: 99.2%
Identity: 15%
PDB header:cell invasion
Chain: A: PDB Molecule:attachment invasion locus protein;
PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis

Phyre2

PDB 1qjp chain A

3D model

Region: 770 - 955
Aligned: 134
Modelled: 154
Confidence: 99.2%
Identity: 17%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 3nb3 chain C

3D model

Region: 770 - 955
Aligned: 134
Modelled: 167
Confidence: 99.2%
Identity: 21%
PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components

Phyre2

PDB 2f1t chain B

3D model

Region: 770 - 955
Aligned: 162
Modelled: 186
Confidence: 99.1%
Identity: 17%
PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein w;
PDBTitle: outer membrane protein ompw

Phyre2

PDB 2x27 chain X

3D model

Region: 769 - 955
Aligned: 176
Modelled: 186
Confidence: 99.1%
Identity: 14%
PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein oprg;
PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa

Phyre2

PDB 1p4t chain A

3D model

Region: 771 - 955
Aligned: 147
Modelled: 172
Confidence: 99.1%
Identity: 19%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 2iwv chain D

3D model

Region: 695 - 955
Aligned: 229
Modelled: 250
Confidence: 99.0%
Identity: 14%
PDB header:ion channel
Chain: D: PDB Molecule:outer membrane protein g;
PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation

Phyre2

PDB 2jmm chain A

3D model

Region: 770 - 955
Aligned: 145
Modelled: 169
Confidence: 99.0%
Identity: 19%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein

Phyre2

PDB 1qj8 chain A

3D model

Region: 806 - 955
Aligned: 131
Modelled: 150
Confidence: 98.9%
Identity: 11%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 2x4m chain D

3D model

Region: 806 - 955
Aligned: 145
Modelled: 148
Confidence: 98.6%
Identity: 11%
PDB header:hydrolase
Chain: D: PDB Molecule:coagulase/fibrinolysin;
PDBTitle: yersinia pestis plasminogen activator pla

Phyre2

PDB 1i78 chain A

3D model

Region: 806 - 955
Aligned: 145
Modelled: 148
Confidence: 98.2%
Identity: 12%
Fold: Transmembrane beta-barrels
Superfamily: OMPT-like
Family: Outer membrane protease OMPT

Phyre2
1

c3sljA_
2

c3aehB_
3

c3kvnA_
4

d1uynx_
5

c3qq2C_
6

c2qomB_
7

d1daba_
8

d1g90a_
9

c2k0lA_
10

c3qraA_
11

d1qjpa_
12

c3nb3C_
13

c2f1tB_
14

c2x27X_
15

d1p4ta_
16

c2iwvD_
17

c2jmmA_
18

d1qj8a_
19

c2x4mD_
20

d1i78a_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3sljA_



100.0 24 PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant
2c3aehB_



100.0 25 PDB header:hydrolase
Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter;
PDBTitle: integral membrane domain of autotransporter hbp
3c3kvnA_



100.0 13 PDB header:hydrolase
Chain: A: PDB Molecule:esterase esta;
PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa
4d1uynx_



100.0 13 Fold:Transmembrane beta-barrels
Superfamily:Autotransporter
Family:Autotransporter
5c3qq2C_



100.0 26 PDB header:membrane protein/protein transport
Chain: C: PDB Molecule:brka autotransporter;
PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka
6c2qomB_



100.0 26 PDB header:hydrolase
Chain: B: PDB Molecule:serine protease espp;
PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain.
7d1daba_



99.4 17 Fold:Single-stranded right-handed beta-helix
Superfamily:Pectin lyase-like
Family:Virulence factor P.69 pertactin
8d1g90a_



99.4 21 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
9c2k0lA_



99.3 18 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.
10c3qraA_



99.2 15 PDB header:cell invasion
Chain: A: PDB Molecule:attachment invasion locus protein;
PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis
11d1qjpa_



99.2 17 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
12c3nb3C_



99.2 21 PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components
13c2f1tB_



99.1 17 PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein w;
PDBTitle: outer membrane protein ompw
14c2x27X_



99.1 14 PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein oprg;
PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa
15d1p4ta_



99.1 19 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
16c2iwvD_



99.0 14 PDB header:ion channel
Chain: D: PDB Molecule:outer membrane protein g;
PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation
17c2jmmA_



99.0 19 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein
18d1qj8a_



98.9 11 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
19c2x4mD_



98.6 11 PDB header:hydrolase
Chain: D: PDB Molecule:coagulase/fibrinolysin;
PDBTitle: yersinia pestis plasminogen activator pla
20d1i78a_



98.2 12 Fold:Transmembrane beta-barrels
Superfamily:OMPT-like
Family:Outer membrane protease OMPT
21c2lhfA_



not modelled 98.2 8 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein h1;
PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles
22c2wjqA_



not modelled 98.0 20 PDB header:transport protein
Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel
PDBTitle: nanc porin structure in hexagonal crystal form.
23c3ml3A_



not modelled 98.0 22 PDB header:protein transport
Chain: A: PDB Molecule:outer membrane protein icsa autotransporter;
PDBTitle: crystal structure of the icsa autochaperone region
24c3a2rX_



not modelled 97.6 10 PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein ii;
PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis
25c3brzA_



not modelled 97.4 13 PDB header:transport protein
Chain: A: PDB Molecule:todx;
PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx
26c3dwoX_



not modelled 97.4 16 PDB header:membrane protein
Chain: X: PDB Molecule:probable outer membrane protein;
PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue
27d1t16a_



not modelled 97.4 14 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Outer membrane protein transport protein
28d3prna_



not modelled 97.0 16 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
29d2fgqx1



not modelled 96.8 16 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
30d2pora_



not modelled 96.8 15 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
31d1osma_



not modelled 96.8 13 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
32d2vdfa1



not modelled 95.8 11 Fold:Transmembrane beta-barrels
Superfamily:OMPT-like
Family:Outer membrane adhesin/invasin OpcA
33d2zfga1



not modelled 95.7 14 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
34c3nsgA_



not modelled 95.7 15 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein f;
PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi
35d1phoa_



not modelled 95.3 12 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
36c3bryB_



not modelled 95.2 15 PDB header:transport protein
Chain: B: PDB Molecule:tbux;
PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux
37c3h09B_



not modelled 94.8 14 PDB header:hydrolase
Chain: B: PDB Molecule:immunoglobulin a1 protease;
PDBTitle: the structure of haemophilus influenzae iga1 protease
38c1xkwA_



not modelled 94.1 14 PDB header:membrane protein
Chain: A: PDB Molecule:fe(iii)-pyochelin receptor;
PDBTitle: pyochelin outer membrane receptor fpta from pseudomonas2 aeruginosa
39c2iahA_



not modelled 93.3 12 PDB header:membrane protein
Chain: A: PDB Molecule:ferripyoverdine receptor;
PDBTitle: crystal structure of the ferripyoverdine receptor of the outer2 membrane of pseudomonas aeruginosa bound to ferripyoverdine.
40c3syjA_



not modelled 93.2 13 PDB header:cell adhesion
Chain: A: PDB Molecule:adhesion and penetration protein autotransporter;
PDBTitle: crystal structure of the haemophilus influenzae hap adhesin
41c1xkhC_



not modelled 90.9 13 PDB header:membrane protein
Chain: C: PDB Molecule:ferripyoverdine receptor;
PDBTitle: pyoverdine outer membrane receptor fpva from pseudomonas aeruginosa2 pao1 bound to pyoverdine
42c2ervA_



not modelled 90.9 8 PDB header:membrane protein
Chain: A: PDB Molecule:hypothetical protein paer03002360;
PDBTitle: crystal structure of the outer membrane enzyme pagl
43c2hdiA_



not modelled 87.9 13 PDB header:protein transport,antimicrobial protein
Chain: A: PDB Molecule:colicin i receptor;
PDBTitle: crystal structure of the colicin i receptor cir from e.coli in complex2 with receptor binding domain of colicin ia.
44d2gufa1



not modelled 69.8 9 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Ligand-gated protein channel
45c2grxB_



not modelled 62.4 12 PDB header:metal transport
Chain: B: PDB Molecule:ferrichrome-iron receptor;
PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome
46d1af6a_



not modelled 57.9 10 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Maltoporin-like
47c3qlbA_



not modelled 56.3 13 PDB header:metal transport
Chain: A: PDB Molecule:enantio-pyochelin receptor;
PDBTitle: enantiopyochelin outer membrane tonb-dependent transporter from2 pseudomonas fluorescens bound to the ferri-enantiopyochelin
48c2o4vA_



not modelled 47.6 12 PDB header:membrane protein
Chain: A: PDB Molecule:porin p;
PDBTitle: an arginine ladder in oprp mediates phosphate specific transfer across2 the outer membrane
49d1by5a_



not modelled 43.0 12 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Ligand-gated protein channel
50d1thqa_



not modelled 32.1 13 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane enzyme PagP
51c3fidA_



not modelled 28.4 12 PDB header:membrane protein
Chain: A: PDB Molecule:putative outer membrane protein (lpxr);
PDBTitle: lpxr from salmonella typhimurium
52c3rbhC_



not modelled 18.8 12 PDB header:transport protein
Chain: C: PDB Molecule:alginate production protein alge;
PDBTitle: structure of alginate export protein alge from pseudomonas aeruginosa
53d2gr7a1



not modelled 16.0 19 Fold:Pili subunits
Superfamily:Pili subunits
Family:YadA C-terminal domain-like
54c2gr7C_



not modelled 16.0 19 PDB header:membrane protein
Chain: C: PDB Molecule:adhesin;
PDBTitle: hia 992-1098
55d1fepa_



not modelled 14.3 8 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Ligand-gated protein channel
56c3dzmB_



not modelled 14.1 11 PDB header:unknown function
Chain: B: PDB Molecule:hypothetical conserved protein;
PDBTitle: crystal structure of a major outer membrane protein from thermus2 thermophilus hb27
57c1ux6A_



not modelled 13.5 22 PDB header:cell adhesion
Chain: A: PDB Molecule:thrombospondin-1;
PDBTitle: structure of a thrombospondin c-terminal fragment reveals a2 novel calcium core in the type 3 repeats
58d1a0tp_



not modelled 12.9 13 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Maltoporin-like
59c1yueA_



not modelled 12.1 17 PDB header:viral protein
Chain: A: PDB Molecule:head vertex protein gp24;
PDBTitle: bacteriophage t4 capsid vertex protein gp24
60c3fbyC_



not modelled 11.9 13 PDB header:cell adhesion
Chain: C: PDB Molecule:cartilage oligomeric matrix protein;
PDBTitle: the crystal structure of the signature domain of cartilage oligomeric2 matrix protein.
61d1nrja_



not modelled 11.0 33 Fold:Profilin-like
Superfamily:SNARE-like
Family:SRP alpha N-terminal domain-like
62d2gr8a1



not modelled 10.9 19 Fold:Pili subunits
Superfamily:Pili subunits
Family:YadA C-terminal domain-like
63c2odjA_



not modelled 10.8 10 PDB header:membrane protein
Chain: A: PDB Molecule:porin d;
PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa
64d1jmxa4



not modelled 10.3 16 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5
65c2ns2A_



not modelled 9.5 15 PDB header:cell cycle
Chain: A: PDB Molecule:spindlin-1;
PDBTitle: crystal structure of spindlin1
66c3fhhA_



not modelled 9.2 10 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane heme receptor shua;
PDBTitle: crystal structure of the heme/hemoglobin outer membrane2 transporter shua from shigella dysenteriae
67d2f0ca1



not modelled 7.7 21 Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Lactophage receptor-binding protein head domain
68d1ux6a1



not modelled 7.4 22 Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Thrombospondin C-terminal domain
69c3emoA_



not modelled 6.7 19 PDB header:membrane protein/cell adhesion
Chain: A: PDB Molecule:hia (adhesin);
PDBTitle: crystal structure of transmembrane hia 973-1098
70c3efmA_



not modelled 6.3 11 PDB header:membrane protein
Chain: A: PDB Molecule:ferric alcaligin siderophore receptor;
PDBTitle: structure of the alcaligin outer membrane recepteur faua from2 bordetella pertussis
71c1fw3A_



not modelled 6.3 15 PDB header:hydrolase, membrane protein
Chain: A: PDB Molecule:outer membrane phospholipase a;
PDBTitle: outer membrane phospholipase a from escherichia coli
72c2y0hA_



not modelled 5.7 11 PDB header:transport protein
Chain: A: PDB Molecule:probable porin;
PDBTitle: crystal structure of pseudomonas aeruginosa opdl
73c3cslB_



not modelled 5.5 15 PDB header:membrane protein/heme binding protein
Chain: B: PDB Molecule:hasr protein;
PDBTitle: structure of the serratia marcescens hemophore receptor hasr in2 complex with its hemophore hasa and heme

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0