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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1ux6A_

Fold library idPDB HeaderMoleculeTitle
c1ux6A_PDB header: cell adhesionChain: A: PDB Molecule: thrombospondin-1;PDBTitle: structure of a thrombospondin c-terminal fragment reveals a2 novel calcium core in the type 3 repeats


Added to library: Tue Mar 16 13:18:07 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ALADNCPLEHNPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDACDHDDDN
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Known secondary structure (DSSP)
SBTTT

SS

TTSSSB
TTT




TT
SSS
GGG
SSTTS

TT


TT
SSS
GGG
SSTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence DGIPDDKDNCRLVPNPDQKDSDGDGRGDACKDDFDHDSVPDIDDICPENVDISETDFRRFQMIPLDPKGT
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Known secondary structure (DSSP) SSS
GGG
TTTTS

TT


TT
SSS
GGGSS
TT
SSS
TTT
SSTT
TT
SS

TT

S
SS

 .........150.........160.........170.........180.........190.........200.........210
Sequence SQNDPNWVVELVQTVNSDPGLAVGYDEFNAVDFSGTFFINTERDDDYAGFVFGYQSSSRFYVVMWKQVTQ
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Known secondary structure (DSSP) SS






SS
S
SS

SS


TTSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence SYWDTNPTRAQGYSGLSVKVVKSTTGPGEHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHR
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Known secondary structure (DSSP)
S

SSS


S
SS
TTSSS
BTTT
TT




TT
 .........290.........300.........310.........320.........330.....
Sequence PKTGFIRVVMYEGKKIMADSGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDP
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Known secondary structure (DSSP) TTTTTT




S


S
SS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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