Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	K	R	R	Y	V	T	L	L	P	L	F	V	L	L	A	A	C	S	S	K	P	K	P	T	E	T	D	T	T	T	G	T	P	S	G	G	F	L	L	E	P	Q	H	N	V	M	Q	M	G	G	D	F	A	N	N	P	N	A
Secondary structure
SS confidence
Disorder		?	?	?	?													?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	Q	F	I	D	K	M	V	N	K	H	G	F	D	R	Q	Q	L	Q	E	I	L	S	Q	A	K	R	L	D	S	V	L	R	L	M	D	N	Q	A	P	T	T	S	V	K	P	P	S	G	P	N	G	A	W	L	R	Y	R	K	K
Secondary structure
SS confidence
Disorder												?	?															?								?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		F	I	T	P	D	N	V	Q	N	G	V	V	F	W	N	Q	Y	E	D	A	L	N	R	A	W	Q	V	Y	G	V	P	P	E	I	I	V	G	I	I	G	V	E	T	R	W	G	R	V	M	G	K	T	R	I	L	D	A	L	A	T
Secondary structure
SS confidence
Disorder																													?																					?					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	S	F	N	Y	P	R	R	A	E	Y	F	S	G	E	L	E	T	F	L	L	M	A	R	D	E	Q	D	D	P	L	N	L	K	G	S	F	A	G	A	M	G	Y	G	Q	F	M	P	S	S	Y	K	Q	Y	A	V	D	F	S	G
Secondary structure
SS confidence
Disorder			?	?																						?	?	?	?	?	?	?	?	?	?																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		D	G	H	I	N	L	W	D	P	V	D	A	I	G	S	V	A	N	Y	F	K	A	H	G	W	V	K	G	D	Q	V	A	V	M	A	N	G	Q	A	P	G	L	P	N	G	F	K	T	K	Y	S	I	S	Q	L	A	A	A	G	L
Secondary structure
SS confidence
Disorder																										?																?		?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		T	P	Q	Q	P	L	G	N	H	Q	Q	A	S	L	L	R	L	D	V	G	T	G	Y	Q	Y	W	Y	G	L	P	N	F	Y	T	I	T	R	Y	N	H	S	T	H	Y	A	M	A	V	W	Q	L	G	Q	A	V	A	L	A	R	V
Secondary structure
SS confidence
Disorder					?	?	?	?	?		?	?																																													?	?	?	?	?
Disorder confidence
		.
Sequence		Q
Secondary structure
SS confidence
Disorder		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qus chain A Region: 40 - 361 Aligned: 312 Modelled: 322 Confidence: 100.0% Identity: 99% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: Bacterial muramidase, catalytic domain Phyre2 PDB 1qsa chain A domain 2 Region: 137 - 263 Aligned: 82 Modelled: 82 Confidence: 99.0% Identity: 27% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: Bacterial muramidase, catalytic domain Phyre2 PDB 1gbs chain A Region: 124 - 262 Aligned: 88 Modelled: 98 Confidence: 98.9% Identity: 24% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: G-type lysozyme Phyre2 PDB 3gxk chain B Region: 123 - 262 Aligned: 93 Modelled: 103 Confidence: 98.9% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:goose-type lysozyme 1; PDBTitle: the crystal structure of g-type lysozyme from atlantic cod2 (gadus morhua l.) in complex with nag oligomers sheds new3 light on substrate binding and the catalytic mechanism.4 native structure to 1.9 Phyre2 PDB 2y8p chain A Region: 131 - 262 Aligned: 86 Modelled: 87 Confidence: 98.9% Identity: 28% PDB header:lyase Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a; PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli Phyre2 PDB 1sly chain A Region: 137 - 262 Aligned: 81 Modelled: 81 Confidence: 98.7% Identity: 27% PDB header:glycosyltransferase Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase; PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a Phyre2 PDB 3mgw chain A Region: 117 - 262 Aligned: 95 Modelled: 105 Confidence: 98.5% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:lysozyme g; PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme Phyre2 PDB 3fi7 chain A Region: 131 - 167 Aligned: 37 Modelled: 37 Confidence: 96.1% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:lmo1076 protein; PDBTitle: crystal structure of the autolysin auto (lmo1076) from listeria2 monocytogenes, catalytic domain Phyre2 PDB 2zyc chain A Region: 130 - 169 Aligned: 40 Modelled: 40 Confidence: 95.6% Identity: 28% PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan hydrolase flgj; PDBTitle: crystal structure of peptidoglycan hydrolase from2 sphingomonas sp. a1 Phyre2 PDB 1xsf chain A Region: 219 - 267 Aligned: 48 Modelled: 49 Confidence: 90.0% Identity: 17% PDB header:cell cycle, hydrolase Chain: A: PDB Molecule:probable resuscitation-promoting factor rpfb; PDBTitle: solution structure of a resuscitation promoting factor2 domain from mycobacterium tuberculosis Phyre2 PDB 1xsf chain A domain 1 Region: 219 - 267 Aligned: 45 Modelled: 49 Confidence: 89.5% Identity: 20% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: RPF-like Phyre2 PDB 3bkh chain A Region: 138 - 263 Aligned: 80 Modelled: 82 Confidence: 87.3% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:lytic transglycosylase; PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144 Phyre2 PDB 3eo5 chain A Region: 219 - 265 Aligned: 43 Modelled: 47 Confidence: 85.9% Identity: 21% PDB header:cell adhesion Chain: A: PDB Molecule:resuscitation-promoting factor rpfb; PDBTitle: crystal structure of the resuscitation promoting factor rpfb Phyre2 PDB 7req chain B domain 1 Region: 131 - 218 Aligned: 85 Modelled: 88 Confidence: 49.1% Identity: 20% Fold: TIM beta/alpha-barrel Superfamily: Cobalamin (vitamin B12)-dependent enzymes Family: Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain Phyre2 PDB 3e9v chain A domain 1 Region: 152 - 216 Aligned: 52 Modelled: 65 Confidence: 44.2% Identity: 31% Fold: BTG domain-like Superfamily: BTG domain-like Family: BTG domain-like Phyre2 PDB 3p0d chain D Region: 222 - 246 Aligned: 25 Modelled: 25 Confidence: 42.3% Identity: 28% PDB header:hydrolase Chain: D: PDB Molecule:glycoside hydrolase family 9; PDBTitle: crystal structure of a multimodular ternary protein complex from2 clostridium thermocellum Phyre2 PDB 2cob chain A domain 1 Region: 123 - 155 Aligned: 33 Modelled: 33 Confidence: 38.5% Identity: 12% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Psq domain Phyre2 PDB 6req chain B Region: 131 - 218 Aligned: 85 Modelled: 88 Confidence: 36.6% Identity: 20% PDB header:isomerase Chain: B: PDB Molecule:protein (methylmalonyl-coa mutase); PDBTitle: methylmalonyl-coa mutase, 3-carboxypropyl-coa inhibitor complex Phyre2 PDB 1lci chain A Region: 236 - 281 Aligned: 46 Modelled: 46 Confidence: 33.8% Identity: 13% Fold: Acetyl-CoA synthetase-like Superfamily: Acetyl-CoA synthetase-like Family: Acetyl-CoA synthetase-like Phyre2 PDB 3gqw chain B Region: 235 - 281 Aligned: 47 Modelled: 47 Confidence: 31.0% Identity: 19% PDB header:ligase Chain: B: PDB Molecule:fatty acid amp ligase; PDBTitle: crystal structure of a fatty acid amp ligase from e. coli with an acyl2 adenylate product bound Phyre2 1 d1qusa_ 2 d1qsaa2 3 d1gbsa_ 4 c3gxkB_ 5 c2y8pA_ 6 c1slyA_ 7 c3mgwA_ 8 c3fi7A_ 9 c2zycA_ 10 c1xsfA_ 11 d1xsfa1 12 c3bkhA_ 13 c3eo5A_ 14 d7reqb1 15 d3e9va1 16 c3p0dD_ 17 d2coba1 18 c6reqB_ 19 d1lcia_ 20 c3gqwB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1qusa_ 100.0 99 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Bacterial muramidase, catalytic domain 2 d1qsaa2 99.0 27 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Bacterial muramidase, catalytic domain 3 d1gbsa_ 98.9 24 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:G-type lysozyme 4 c3gxkB_ 98.9 19 PDB header:hydrolase Chain: B: PDB Molecule:goose-type lysozyme 1; PDBTitle: the crystal structure of g-type lysozyme from atlantic cod2 (gadus morhua l.) in complex with nag oligomers sheds new3 light on substrate binding and the catalytic mechanism.4 native structure to 1.9 5 c2y8pA_ 98.9 28 PDB header:lyase Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a; PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli 6 c1slyA_ 98.7 27 PDB header:glycosyltransferase Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase; PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a 7 c3mgwA_ 98.5 23 PDB header:hydrolase Chain: A: PDB Molecule:lysozyme g; PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme 8 c3fi7A_ 96.1 22 PDB header:hydrolase Chain: A: PDB Molecule:lmo1076 protein; PDBTitle: crystal structure of the autolysin auto (lmo1076) from listeria2 monocytogenes, catalytic domain 9 c2zycA_ 95.6 28 PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan hydrolase flgj; PDBTitle: crystal structure of peptidoglycan hydrolase from2 sphingomonas sp. a1 10 c1xsfA_ 90.0 17 PDB header:cell cycle, hydrolase Chain: A: PDB Molecule:probable resuscitation-promoting factor rpfb; PDBTitle: solution structure of a resuscitation promoting factor2 domain from mycobacterium tuberculosis 11 d1xsfa1 89.5 20 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:RPF-like 12 c3bkhA_ 87.3 23 PDB header:hydrolase Chain: A: PDB Molecule:lytic transglycosylase; PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144 13 c3eo5A_ 85.9 21 PDB header:cell adhesion Chain: A: PDB Molecule:resuscitation-promoting factor rpfb; PDBTitle: crystal structure of the resuscitation promoting factor rpfb 14 d7reqb1 49.1 20 Fold:TIM beta/alpha-barrel Superfamily:Cobalamin (vitamin B12)-dependent enzymes Family:Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain 15 d3e9va1 44.2 31 Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like 16 c3p0dD_ 42.3 28 PDB header:hydrolase Chain: D: PDB Molecule:glycoside hydrolase family 9; PDBTitle: crystal structure of a multimodular ternary protein complex from2 clostridium thermocellum 17 d2coba1 38.5 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Psq domain 18 c6reqB_ 36.6 20 PDB header:isomerase Chain: B: PDB Molecule:protein (methylmalonyl-coa mutase); PDBTitle: methylmalonyl-coa mutase, 3-carboxypropyl-coa inhibitor complex 19 d1lcia_ 33.8 13 Fold:Acetyl-CoA synthetase-like Superfamily:Acetyl-CoA synthetase-like Family:Acetyl-CoA synthetase-like 20 c3gqwB_ 31.0 19 PDB header:ligase Chain: B: PDB Molecule:fatty acid amp ligase; PDBTitle: crystal structure of a fatty acid amp ligase from e. coli with an acyl2 adenylate product bound 21 c3bjqA_ not modelled 27.4 12 PDB header:viral protein Chain: A: PDB Molecule:phage-related protein; PDBTitle: crystal structure of a phage-related protein (bb3626) from bordetella2 bronchiseptica rb50 at 2.05 a resolution 22 d1v25a_ not modelled 24.7 13 Fold:Acetyl-CoA synthetase-like Superfamily:Acetyl-CoA synthetase-like Family:Acetyl-CoA synthetase-like 23 c2djpA_ not modelled 22.8 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein sb145; PDBTitle: the solution structure of the lysm domain of human2 hypothetical protein sb145 24 c2zuxA_ not modelled 21.2 40 PDB header:lyase Chain: A: PDB Molecule:yesw protein; PDBTitle: crystal structure of rhamnogalacturonan lyase yesw2 complexed with rhamnose 25 d1zfsa1 not modelled 21.2 18 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 26 c1g3wA_ not modelled 20.4 11 PDB header:gene regulation Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: cd-cys102ser dtxr 27 c2zuyA_ not modelled 20.3 40 PDB header:lyase Chain: A: PDB Molecule:yesx protein; PDBTitle: crystal structure of exotype rhamnogalacturonan lyase yesx 28 c3fcuB_ not modelled 20.2 16 PDB header:cell adhesion/blood clotting Chain: B: PDB Molecule:integrin beta-3; PDBTitle: structure of headpiece of integrin aiibb3 in open conformation 29 c1lnsA_ not modelled 18.6 36 PDB header:hydrolase Chain: A: PDB Molecule:x-prolyl dipeptidyl aminopetidase; PDBTitle: crystal structure analysis of the x-prolyl dipeptidyl2 aminopeptidase from lactococcus lactis 30 c1zx4B_ not modelled 18.3 17 PDB header:translation Chain: B: PDB Molecule:plasmid partition par b protein; PDBTitle: structure of parb bound to dna 31 c2c4dA_ not modelled 17.5 40 PDB header:lectin Chain: A: PDB Molecule:psathyrella velutina lectin pvl; PDBTitle: 2.6a crystal structure of psathyrella velutina lectin in2 complex with n-acetylglucosamine 32 d1ohzb_ not modelled 16.1 21 Fold:Type I dockerin domain Superfamily:Type I dockerin domain Family:Type I dockerin domain 33 c3etcB_ not modelled 15.9 29 PDB header:ligase Chain: B: PDB Molecule:amp-binding protein; PDBTitle: 2.1 a structure of acyl-adenylate synthetase from methanosarcina2 acetivorans containing a link between lys256 and cys298 34 d1nvma1 not modelled 15.8 21 Fold:RuvA C-terminal domain-like Superfamily:post-HMGL domain-like Family:DmpG/LeuA communication domain-like 35 d1e0ga_ not modelled 15.5 15 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 36 d1aqta1 not modelled 15.5 47 Fold:Long alpha-hairpin Superfamily:Epsilon subunit of F1F0-ATP synthase C-terminal domain Family:Epsilon subunit of F1F0-ATP synthase C-terminal domain 37 d2cclb1 not modelled 14.5 21 Fold:Type I dockerin domain Superfamily:Type I dockerin domain Family:Type I dockerin domain 38 c2vkzH_ not modelled 13.9 26 PDB header:transferase Chain: H: PDB Molecule:fatty acid synthase subunit beta; PDBTitle: structure of the cerulenin-inhibited fungal fatty acid2 synthase type i multienzyme complex 39 d1nxca_ not modelled 13.8 27 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 40 c2uvaI_ not modelled 13.8 23 PDB header:transferase Chain: I: PDB Molecule:fatty acid synthase beta subunits; PDBTitle: crystal structure of fatty acid synthase from thermomyces2 lanuginosus at 3.1 angstrom resolution. this file contains3 the beta subunits of the fatty acid synthase. the entire4 crystal structure consists of one heterododecameric fatty5 acid synthase and is described in remark 400 41 d1k0ga_ not modelled 13.6 16 Fold:ADC synthase Superfamily:ADC synthase Family:ADC synthase 42 d1dava_ not modelled 13.2 31 Fold:Type I dockerin domain Superfamily:Type I dockerin domain Family:Type I dockerin domain 43 d1twfa_ not modelled 12.9 35 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta-prime 44 d1uwsa_ not modelled 12.3 21 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Family 1 of glycosyl hydrolase 45 c3pn8A_ not modelled 11.6 19 PDB header:hydrolase Chain: A: PDB Molecule:putative phospho-beta-glucosidase; PDBTitle: the crystal structure of 6-phospho-beta-glucosidase from streptococcus2 mutans ua159 46 c2xhyD_ not modelled 11.6 19 PDB header:hydrolase Chain: D: PDB Molecule:6-phospho-beta-glucosidase bgla; PDBTitle: crystal structure of e.coli bgla 47 d1c7va_ not modelled 11.6 18 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 48 c3r74B_ not modelled 11.6 13 PDB header:lyase, biosynthetic protein Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i; PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383 49 d3c1va1 not modelled 11.4 11 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 50 c2pmzQ_ not modelled 11.3 36 PDB header:translation, transferase Chain: Q: PDB Molecule:dna-directed rna polymerase subunit a; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 51 c2aaoA_ not modelled 11.1 45 PDB header:transferase Chain: A: PDB Molecule:calcium-dependent protein kinase, isoform ak1; PDBTitle: regulatory apparatus of calcium dependent protein kinase from2 arabidopsis thaliana 52 c3k8kB_ not modelled 11.0 28 PDB header:membrane protein Chain: B: PDB Molecule:alpha-amylase, susg; PDBTitle: crystal structure of susg 53 c2it0A_ not modelled 10.9 15 PDB header:transcription/dna Chain: A: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii 54 c2vn5B_ not modelled 10.7 21 PDB header:cell adhesion Chain: B: PDB Molecule:endoglucanase a; PDBTitle: the clostridium cellulolyticum dockerin displays a dual2 binding mode for its cohesin partner 55 d2z15a1 not modelled 10.6 35 Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like 56 c2d1tA_ not modelled 10.5 7 PDB header:oxidoreductase Chain: A: PDB Molecule:luciferin 4-monooxygenase; PDBTitle: crystal structure of the thermostable japanese firefly2 luciferase red-color emission s286n mutant complexed with3 high-energy intermediate analogue 57 c2lcvA_ not modelled 10.4 10 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional repressor cytr; PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation 58 c2vrgA_ not modelled 10.2 20 PDB header:transport Chain: A: PDB Molecule:multiple coagulation factor deficiency protein 2; PDBTitle: structure of human mcfd2 59 c3lcpC_ not modelled 10.0 40 PDB header:protein binding Chain: C: PDB Molecule:multiple coagulation factor deficiency protein 2; PDBTitle: crystal structure of the carbohydrate recognition domain of lman1 in2 complex with mcfd2 60 c2y5iF_ not modelled 9.9 11 PDB header:metal-binding protein Chain: F: PDB Molecule:s100 calcium binding protein z; PDBTitle: s100z from zebrafish in complex with calcium 61 c3ggzC_ not modelled 9.7 25 PDB header:protein transport, endocytosis Chain: C: PDB Molecule:increased sodium tolerance protein 1; PDBTitle: crystal structure of s.cerevisiae ist1 n-terminal domain in2 complex with did2 mim motif 62 c3hruA_ not modelled 9.5 8 PDB header:transcription Chain: A: PDB Molecule:metalloregulator scar; PDBTitle: crystal structure of scar with bound zn2+ 63 c3h4sE_ not modelled 9.3 20 PDB header:motor protein/calcium binding protein Chain: E: PDB Molecule:kcbp interacting ca2+-binding protein; PDBTitle: structure of the complex of a mitotic kinesin with its2 calcium binding regulator 64 c3rqcB_ not modelled 9.3 19 PDB header:transferase Chain: B: PDB Molecule:probable lipoamide acyltransferase; PDBTitle: crystal structure of the catalytic core of the 2-oxoacid dehydrogenase2 multienzyme complex from thermoplasma acidophilum 65 c2l8nA_ not modelled 9.3 10 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional repressor cytr; PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna 66 d1a4pa_ not modelled 9.2 14 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 67 d1lwub1 not modelled 9.2 17 Fold:Fibrinogen C-terminal domain-like Superfamily:Fibrinogen C-terminal domain-like Family:Fibrinogen C-terminal domain-like 68 d1f86a_ not modelled 9.1 23 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 69 d1a03a_ not modelled 9.1 19 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 70 c3fovA_ not modelled 9.0 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0102 protein rpa0323; PDBTitle: crystal structure of protein rpa0323 of unknown function from2 rhodopseudomonas palustris 71 c2da4A_ not modelled 9.0 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156; PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156 72 d1ynjd1 not modelled 8.9 35 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta-prime 73 d1j55a_ not modelled 8.9 11 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 74 c2y3nB_ not modelled 8.4 42 PDB header:structrual protein/hydrolase Chain: B: PDB Molecule:cellulosomal family-48 processive glycoside hydrolase; PDBTitle: type ii cohesin-dockerin domain from bacteroides cellolosolvens 75 c3ct5A_ not modelled 8.4 25 PDB header:hydrolase Chain: A: PDB Molecule:morphogenesis protein 1; PDBTitle: crystal and cryoem structural studies of a cell wall degrading enzyme2 in the bacteriophage phi29 tail 76 c2g8yB_ not modelled 8.2 17 PDB header:oxidoreductase Chain: B: PDB Molecule:malate/l-lactate dehydrogenases; PDBTitle: the structure of a putative malate/lactate dehydrogenase from e. coli. 77 d1uxda_ not modelled 8.2 14 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 78 d1boda_ not modelled 8.2 36 Fold:EF Hand-like Superfamily:EF-hand Family:Calbindin D9K 79 c2h1xB_ not modelled 8.1 19 PDB header:hydrolase Chain: B: PDB Molecule:5-hydroxyisourate hydrolase (formerly known as PDBTitle: crystal structure of 5-hydroxyisourate hydrolase (formerly2 known as trp, transthyretin related protein) 80 c2fcdA_ not modelled 7.9 25 PDB header:cell cycle Chain: A: PDB Molecule:myosin light chain 1; PDBTitle: solution structure of n-lobe myosin light chain from2 saccharomices cerevisiae 81 d1u5ta1 not modelled 7.8 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 82 d4icba_ not modelled 7.8 40 Fold:EF Hand-like Superfamily:EF-hand Family:Calbindin D9K 83 c3kztB_ not modelled 7.7 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function (np_812423.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution 84 c1u8cB_ not modelled 7.7 14 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: a novel adaptation of the integrin psi domain revealed from its2 crystal structure 85 c2oznB_ not modelled 7.7 29 PDB header:toxin Chain: B: PDB Molecule:hyalurononglucosaminidase; PDBTitle: the cohesin-dockerin complex of nagj and nagh from clostridium2 perfringens 86 c2kq5A_ not modelled 7.7 26 PDB header:unknown function Chain: A: PDB Molecule:avirulence protein; PDBTitle: solution nmr structure of a section of the repeat domain of the type2 iii effector protein ptha 87 d1bw6a_ not modelled 7.6 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 88 c3h0gA_ not modelled 7.6 35 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase ii subunit rpb1; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 89 c3ptkB_ not modelled 7.6 27 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase os4bglu12; PDBTitle: the crystal structure of rice (oryza sativa l.) os4bglu12 90 c1irjG_ not modelled 7.5 20 PDB header:metal binding protein Chain: G: PDB Molecule:migration inhibitory factor-related protein 14; PDBTitle: crystal structure of the mrp14 complexed with chaps 91 d1nsha_ not modelled 7.5 21 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 92 c1g6iA_ not modelled 7.4 28 PDB header:hydrolase Chain: A: PDB Molecule:class i alpha-1,2-mannosidase; PDBTitle: crystal structure of the yeast alpha-1,2-mannosidase with bound 1-2 deoxymannojirimycin at 1.59 a resolution 93 c1bdhA_ not modelled 7.3 5 PDB header:transcription/dna Chain: A: PDB Molecule:protein (purine repressor); PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex 94 c1i6hA_ not modelled 7.3 35 PDB header:transcription/dna-rna hybrid Chain: A: PDB Molecule:dna-directed rna polymerase ii largest subunit; PDBTitle: rna polymerase ii elongation complex 95 d1tyea_ not modelled 7.3 42 Fold:7-bladed beta-propeller Superfamily:Integrin alpha N-terminal domain Family:Integrin alpha N-terminal domain 96 c1vbiA_ not modelled 7.2 13 PDB header:oxidoreductase Chain: A: PDB Molecule:type 2 malate/lactate dehydrogenase; PDBTitle: crystal structure of type 2 malate/lactate dehydrogenase from thermus2 thermophilus hb8 97 d1qpza1 not modelled 7.2 3 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 98 d1snla_ not modelled 7.2 36 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 99 d1dl2a_ not modelled 7.1 31 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0