PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1vbiA_

Fold library id	PDB Header	Molecule	Title
c1vbiA_	PDB header: oxidoreductase	Chain: A: PDB Molecule: type 2 malate/lactate dehydrogenase;	PDBTitle: crystal structure of type 2 malate/lactate dehydrogenase2 from thermus thermophilus hb8

Links to external resources
Added to library: Tue Mar 16 12:30:56 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M R W R A D F L S A W A E A L L R K A G A D E P S A K A V A W A L V E A D L R G V G S H G L L R L P V Y V R R L E A G L V N P S P T L P L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
G G G S G G G T T
S B S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E R G P V A L L D G E H G F G P R V A L K A V E A A Q S L A R R H G L G A V G V R R S T H F G M A G L Y A E K L A R E G F V A W V T T N A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T B
S
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P D V V P F G G R E K A L G T N P L A F A A P A P Q G I L V A D L A T S E S A M G K V F L A R E K G E R I P P S W G V D R E G S P T D D P H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T
S S
B
T T
S B S S
T
T T S
T T S
B
S
G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence R V Y A L R P L G G P K G Y A L A L L V E V L S G V L T G A G V A H G I G R M Y D E W D R P Q D V G H F L L A L D P G R F V G K E A F L E R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G
B T T T T T T T T S
G G G S
T T T
S S
G G G T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340

Sequence M G A L W Q A L K A T P P A P G H E E V F L P G E L E A R R R E R A L A E G M A L P E R V V A E L K A L G E R Y G V P W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T
S S
T T
T

Download: PDB structure FASTA sequence
Hidden Markov model

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	R	W	R	A	D	F	L	S	A	W	A	E	A	L	L	R	K	A	G	A	D	E	P	S	A	K	A	V	A	W	A	L	V	E	A	D	L	R	G	V	G	S	H	G	L	L	R	L	P	V	Y	V	R	R	L	E	A	G	L	V	N	P	S	P	T	L	P	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T	T																			T	T		G	G	G	S	G	G	G										T	T		S	B	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	R	G	P	V	A	L	L	D	G	E	H	G	F	G	P	R	V	A	L	K	A	V	E	A	A	Q	S	L	A	R	R	H	G	L	G	A	V	G	V	R	R	S	T	H	F	G	M	A	G	L	Y	A	E	K	L	A	R	E	G	F	V	A	W	V	T	T	N	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T							T	T	B																					S																									T	T										S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	D	V	V	P	F	G	G	R	E	K	A	L	G	T	N	P	L	A	F	A	A	P	A	P	Q	G	I	L	V	A	D	L	A	T	S	E	S	A	M	G	K	V	F	L	A	R	E	K	G	E	R	I	P	P	S	W	G	V	D	R	E	G	S	P	T	D	D	P	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B			T	T		S	S			B												T	T									S	B	S	S												T					T	T	S				T	T	S		B		S		G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	R	V	Y	A	L	R	P	L	G	G	P	K	G	Y	A	L	A	L	L	V	E	V	L	S	G	V	L	T	G	A	G	V	A	H	G	I	G	R	M	Y	D	E	W	D	R	P	Q	D	V	G	H	F	L	L	A	L	D	P	G	R	F	V	G	K	E	A	F	L	E	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G						B	T	T	T															T	T	T	T	T	S			G	G	G	S			T	T	T			S	S													G	G	G	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Sequence	M	G	A	L	W	Q	A	L	K	A	T	P	P	A	P	G	H	E	E	V	F	L	P	G	E	L	E	A	R	R	R	E	R	A	L	A	E	G	M	A	L	P	E	R	V	V	A	E	L	K	A	L	G	E	R	Y	G	V	P	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	S				T	T		S	S				T	T																																	T