PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1i6hA_

Fold library id	PDB Header	Molecule	Title
c1i6hA_	PDB header: transcription/dna-rna hybrid	Chain: A: PDB Molecule: dna-directed rna polymerase ii largest subunit;	PDBTitle: rna polymerase ii elongation complex

Links to external resources
Added to library: Tue Mar 16 14:13:40 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V G Q Q Y S S A P L R T V K E V Q F G L F S P E E V R A I S V A K I R F P E T M D E T Q T R A K I G G L N D P R L G S I D R N L K C Q T C Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
S
B T T B S S
S S S S
S S S
S T T
S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E G M N E C P G H F G H I D L A K P V F H V G F I A K I K K V C E C V C M H C G K L L L D E H N E L M R Q A L A I K D S K K R F A A I W T L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
G G G T T T T T T S
T T S T T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence C K T K M V C E T D V P S L V S R G G C G N T Q P T I R K D G L K L V G S W K L R V L S T E E I L N I F K H I S V K D F T S L G F N E V F S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
B
S
S
B
T T
T
T T
S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence R P E W M I L T C L P V P P P P V R P S E D D L T F K L A D I L K A N I S L E T L E H N G A P H H A I E E A E S L L Q F H V A T Y M D N D I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S
T T T S
S
S T T S T T
S S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence A G Q P Q A P V K S I R A R L K G K E G R I R G N L M G K R V D F S A R T V I S G D P N L E L D Q V G V P K S I A K T L T Y P E V V T P Y N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S S S S S T T S S
S S
T T S
T T S
T T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence I D R L T Q L V R N G P N E H P G A K Y V I R D S G D R I D L R Y S K R A G D I Q L Q Y G W K V E R H I M D N D P V L F N R Q P S L H K M S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T T
T T
T T S
G G G S
T T
T T
S S
S S T T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence M M A H R V K V I P Y S T F R L N L S V T S P Y N A D F D G D E M N L H V P Q S E E T R A E L S Q L C A V P L Q I V S P Q S N K P C M G I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S
G G G T
T T T
S S B T G G G S B
S S S S S B S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence Q D T L C G I R K L T L R D T F I E L D Q V L N M L Y W V P D W D G V I P T P A I I K P K P L W S G K Q I L S V A I P N G I H L Q R F D E G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T
S T T
S
S
S S S
S
T T
T T

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence T T L L S P K D N G M L I I D G Q I I F G V V E K K T V G S S N G G L I H V V T R E K G P Q V C A K L F G N I Q K V V N F W L L H N G F S T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S
S
T T S
S S S
S S
T T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence G I G D T I A D G P T M R E I T E T I A E A K K K V L D V T K E A Q A N L L T A K H G M T L R E S F E D N V V R F L N E A R D K A G R L A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G
T T
T T S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence V N L K D L N N V K Q M V M A G S K G S F I N I A Q M S A C V G Q Q S V E G K R I A F G F V D R T L P H F S K D D Y S P E S K G F V E N S Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
T T T S S
S
B T T B S
S B T T B S S T T S
S S
S T T T T T
S
T

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence L R G L T P Q E F F F H A M G G R E G L I D T A V K T A E T G Y I Q R R L V K A L E D I M V H Y D N T T R N S L G N V I Q F I Y G E D G M D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
T T S
T T
S S G G G T T B

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence A A H I E K Q S L D T I G G S D A A F E K R Y R V D L L N T D H T L D P S L L E S G S E I L G D L K L Q V L L D E E Y K Q L V K D R K F L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
T T S S S
S S
T T S S
T T T S S S S T T T T T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence E V F V D G E A N W P L P V N I R R I I Q N A Q Q T F H I D H T K P S D L T I K D I V L G V K D L Q E N L L V L R G K N E I I Q N A Q R D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
T T T T
T T S
T T S
S
S T

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence V T L F C C L L R S R L A T R R V L Q E Y R L T K Q A F D W V L S N I E A Q F L R S V V H P G E M V G V L A A Q S I G E P A T Q M T L K K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T S
B
T T
T T T T T
S

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence T S G V P R L K E I L N V A K N M K T P S L T V Y L E P G H A A D Q E Q A K L I R S A I E H T T L K S V T I A S E I Y Y D P D P R S T V I P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S S
S S
B
S S
S S
S
S G G G
T T S
S S G

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . . . . . 1170 . . . . . . . . . 1180 . . . . . . . . . 1190

Sequence E D E E I I Q L H F S L Q Q S P W L L R L E L D R A A M N D K D L T M G Q V G E R I K Q T F K N D L F V I W S E D N D E K L I I R C R V V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G T S S
S
T T
T T S
S S S
T T S S S

. . . . . . . . . 1200 . . . . . . . . . 1210 . . . . . . . . . 1220 . . . . . . . . . 1230 . . . . . . . . . 1240 . . . . . . . . . 1250 . . . . . . . . . 1260

Sequence E E D H M L K K I E N T M L E N I T L R G V E N I E R V V M M K Y D R K V P S P T G E Y V K E P E W V L E T D G V N L S E V M T V P G I D P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
T T
T T S S
S
T T S S S B
T

. . . . . . . . . 1270 . . . . . . . . . 1280 . . . . . . . . . 1290 . . . . . . . . . 1300 . . . . . . . . . 1310 . . . . . . . . . 1320 . . . . . . . . . 1330

Sequence T R I Y T N S F I D I M E V L G I E A G R A A L Y K E V Y N V I A S D G S Y V N Y R H M A L L V D V M T T Q G G L T S V T R H G F N R S N T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T S
T T S S
S S T T S S

. . . . . . . . . 1340 . . . . . . . . . 1350 . . . . . . . . . 1360 . . . . . . . . . 1370 . . . . . . . . . 1380 .

Sequence G A L M R C S F E E T V E I L F E A G A S A E L D D C R G V S E N V I L G Q M A P I G T G A F D V M I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T
S
S T T
S S G G G S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	G	Q	Q	Y	S	S	A	P	L	R	T	V	K	E	V	Q	F	G	L	F	S	P	E	E	V	R	A	I	S	V	A	K	I	R	F	P	E	T	M	D	E	T	Q	T	R	A	K	I	G	G	L	N	D	P	R	L	G	S	I	D	R	N	L	K	C	Q	T	C	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S				S	S																																S		B	T	T	B	S	S			S	S	S	S		S	S	S			S	T	T				S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	G	M	N	E	C	P	G	H	F	G	H	I	D	L	A	K	P	V	F	H	V	G	F	I	A	K	I	K	K	V	C	E	C	V	C	M	H	C	G	K	L	L	L	D	E	H	N	E	L	M	R	Q	A	L	A	I	K	D	S	K	K	R	F	A	A	I	W	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S																	G	G	G									T	T			T	T	T	T			S			T	T	S					T	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	C	K	T	K	M	V	C	E	T	D	V	P	S	L	V	S	R	G	G	C	G	N	T	Q	P	T	I	R	K	D	G	L	K	L	V	G	S	W	K	L	R	V	L	S	T	E	E	I	L	N	I	F	K	H	I	S	V	K	D	F	T	S	L	G	F	N	E	V	F	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S			B			S									S					B								T	T																						T									T	T			S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	R	P	E	W	M	I	L	T	C	L	P	V	P	P	P	P	V	R	P	S	E	D	D	L	T	F	K	L	A	D	I	L	K	A	N	I	S	L	E	T	L	E	H	N	G	A	P	H	H	A	I	E	E	A	E	S	L	L	Q	F	H	V	A	T	Y	M	D	N	D	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	S										T	T	T	S																										S				S	T	T	S														T	T		S	S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	A	G	Q	P	Q	A	P	V	K	S	I	R	A	R	L	K	G	K	E	G	R	I	R	G	N	L	M	G	K	R	V	D	F	S	A	R	T	V	I	S	G	D	P	N	L	E	L	D	Q	V	G	V	P	K	S	I	A	K	T	L	T	Y	P	E	V	V	T	P	Y	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S									S					S	S	S	S	S					T	T	S	S				S	S										T	T	S		T	T												S								T	T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	I	D	R	L	T	Q	L	V	R	N	G	P	N	E	H	P	G	A	K	Y	V	I	R	D	S	G	D	R	I	D	L	R	Y	S	K	R	A	G	D	I	Q	L	Q	Y	G	W	K	V	E	R	H	I	M	D	N	D	P	V	L	F	N	R	Q	P	S	L	H	K	M	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	S	T	T								T	T						T	T	S		G	G	G	S						T	T									T	T								S	S			S	S	T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	M	M	A	H	R	V	K	V	I	P	Y	S	T	F	R	L	N	L	S	V	T	S	P	Y	N	A	D	F	D	G	D	E	M	N	L	H	V	P	Q	S	E	E	T	R	A	E	L	S	Q	L	C	A	V	P	L	Q	I	V	S	P	Q	S	N	K	P	C	M	G	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S	S	S					G	G	G					T			T	T	T										S											S	B	T	G	G	G	S	B		S	S	S	S	S	B	S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	Q	D	T	L	C	G	I	R	K	L	T	L	R	D	T	F	I	E	L	D	Q	V	L	N	M	L	Y	W	V	P	D	W	D	G	V	I	P	T	P	A	I	I	K	P	K	P	L	W	S	G	K	Q	I	L	S	V	A	I	P	N	G	I	H	L	Q	R	F	D	E	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	T	T															S	T	T			S						S			S	S	S													S		T	T								T	T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	T	T	L	L	S	P	K	D	N	G	M	L	I	I	D	G	Q	I	I	F	G	V	V	E	K	K	T	V	G	S	S	N	G	G	L	I	H	V	V	T	R	E	K	G	P	Q	V	C	A	K	L	F	G	N	I	Q	K	V	V	N	F	W	L	L	H	N	G	F	S	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S		T	T	S		S					T	T					S			S					S	S		S	S																																T	T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	G	I	G	D	T	I	A	D	G	P	T	M	R	E	I	T	E	T	I	A	E	A	K	K	K	V	L	D	V	T	K	E	A	Q	A	N	L	L	T	A	K	H	G	M	T	L	R	E	S	F	E	D	N	V	V	R	F	L	N	E	A	R	D	K	A	G	R	L	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	G																														T	T						T	T	S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	V	N	L	K	D	L	N	N	V	K	Q	M	V	M	A	G	S	K	G	S	F	I	N	I	A	Q	M	S	A	C	V	G	Q	Q	S	V	E	G	K	R	I	A	F	G	F	V	D	R	T	L	P	H	F	S	K	D	D	Y	S	P	E	S	K	G	F	V	E	N	S	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S		T	T								T	T	T	S	S											S							B	T	T	B	S				S	B	T	T	B	S	S	T	T	S		S	S			S	T	T	T	T	T				S		T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	L	R	G	L	T	P	Q	E	F	F	F	H	A	M	G	G	R	E	G	L	I	D	T	A	V	K	T	A	E	T	G	Y	I	Q	R	R	L	V	K	A	L	E	D	I	M	V	H	Y	D	N	T	T	R	N	S	L	G	N	V	I	Q	F	I	Y	G	E	D	G	M	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T																																								T	T					T	T	S					T	T						S	S	G	G	G	T	T	B
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	A	A	H	I	E	K	Q	S	L	D	T	I	G	G	S	D	A	A	F	E	K	R	Y	R	V	D	L	L	N	T	D	H	T	L	D	P	S	L	L	E	S	G	S	E	I	L	G	D	L	K	L	Q	V	L	L	D	E	E	Y	K	Q	L	V	K	D	R	K	F	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G							T	T	S	S	S													S	S		T	T	S	S			T	T	T	S	S	S	S	T	T	T	T	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	E	V	F	V	D	G	E	A	N	W	P	L	P	V	N	I	R	R	I	I	Q	N	A	Q	Q	T	F	H	I	D	H	T	K	P	S	D	L	T	I	K	D	I	V	L	G	V	K	D	L	Q	E	N	L	L	V	L	R	G	K	N	E	I	I	Q	N	A	Q	R	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T									S											T	T	T	T			T	T	S																	T	T	S			S					S										T
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	V	T	L	F	C	C	L	L	R	S	R	L	A	T	R	R	V	L	Q	E	Y	R	L	T	K	Q	A	F	D	W	V	L	S	N	I	E	A	Q	F	L	R	S	V	V	H	P	G	E	M	V	G	V	L	A	A	Q	S	I	G	E	P	A	T	Q	M	T	L	K	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T											S								T	S																						B			T	T													T	T	T	T	T						S
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	T	S	G	V	P	R	L	K	E	I	L	N	V	A	K	N	M	K	T	P	S	L	T	V	Y	L	E	P	G	H	A	A	D	Q	E	Q	A	K	L	I	R	S	A	I	E	H	T	T	L	K	S	V	T	I	A	S	E	I	Y	Y	D	P	D	P	R	S	T	V	I	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T		S	S		S	S							B		S	S		S	S													S				S	G	G	G												T	T	S		S	S	G
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Sequence	E	D	E	E	I	I	Q	L	H	F	S	L	Q	Q	S	P	W	L	L	R	L	E	L	D	R	A	A	M	N	D	K	D	L	T	M	G	Q	V	G	E	R	I	K	Q	T	F	K	N	D	L	F	V	I	W	S	E	D	N	D	E	K	L	I	I	R	C	R	V	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G						T	S	S						S															T	T												T	T	S		S	S	S							T	T	S	S	S
	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260
Sequence	E	E	D	H	M	L	K	K	I	E	N	T	M	L	E	N	I	T	L	R	G	V	E	N	I	E	R	V	V	M	M	K	Y	D	R	K	V	P	S	P	T	G	E	Y	V	K	E	P	E	W	V	L	E	T	D	G	V	N	L	S	E	V	M	T	V	P	G	I	D	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T																	S		T	T																T	T	S	S													S							T	T	S	S	S	B		T
	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330
Sequence	T	R	I	Y	T	N	S	F	I	D	I	M	E	V	L	G	I	E	A	G	R	A	A	L	Y	K	E	V	Y	N	V	I	A	S	D	G	S	Y	V	N	Y	R	H	M	A	L	L	V	D	V	M	T	T	Q	G	G	L	T	S	V	T	R	H	G	F	N	R	S	N	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T				S																												T	T	S																	T	T	S	S				S	S					T	T	S	S
	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.
Sequence	G	A	L	M	R	C	S	F	E	E	T	V	E	I	L	F	E	A	G	A	S	A	E	L	D	D	C	R	G	V	S	E	N	V	I	L	G	Q	M	A	P	I	G	T	G	A	F	D	V	M	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	T												T	T					S		S							T	T				S	S	G	G	G	S	S