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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c2vkzH_

Fold library idPDB HeaderMoleculeTitle
c2vkzH_PDB header: transferaseChain: H: PDB Molecule: fatty acid synthase subunit beta;PDBTitle: structure of the cerulenin-inhibited fungal fatty acid2 synthase type i multienzyme complex


Added to library: Tue Mar 16 13:05:52 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP
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Known secondary structure (DSSP)




TT



TTTS



TTT
SSSS

STT

S
 .........80.........90.........100.........110.........120.........130.........140
Sequence SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA
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Known secondary structure (DSSP) SS

SS

SS
TS


TT



S



 .........150.........160.........170.........180.........190.........200.........210
Sequence LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN
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Known secondary structure (DSSP) TS



TTS
S
TSSS
TT


 .........220.........230.........240.........250.........260.........270.........280
Sequence ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA
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Known secondary structure (DSSP)
GGG


ST

TSTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN
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Known secondary structure (DSSP) T


S





TT

S

SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA
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Known secondary structure (DSSP) TS
GGG



SSS
S
S

TT


TTS
GGG





S
S
 .........430.........440.........450.........460.........470.........480.........490
Sequence SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT
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Known secondary structure (DSSP) S
TTSTTTSSS



TTT

S
BB
TTT
SBSSS
SS
TS
B
T
 .........500.........510.........520.........530.........540.........550.........560
Sequence QFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQEIFDVTSNGLKKNPNWLEE
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Known secondary structure (DSSP)



S
SSSGGGSTTBS
TT




SS
SSB
TTTTT

SGGG




B
 .........570.........580.........590.........600.........610.........620.........630
Sequence YHPKLIKNKSGKIFVETKFSKLIGRPPLLVPGMTPCTVSPDFVAATTNAGYTIELAGGGYFSAAGMTAAI
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Known secondary structure (DSSP) T


SS


SS
S


T
TT
GGG

S
 .........640.........650.........660.........670.........680.........690.........700
Sequence DSVVSQIEKGSTFGINLIYVNPFMLQWGIPLIKELRSKGYPIQFLTIGAGVPSLEVASEYIETLGLKYLG
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Known secondary structure (DSSP) S
TT

TT
TTTT
SSS


S

S
 .........710.........720.........730.........740.........750.........760.........770
Sequence LKPGSIDAISQVINIAKAHPNFPIALQWTGGRGGGHHSFEDAHTPMLQMYSKIRRHPNIMLIFGSGFGSA
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Known secondary structure (DSSP)


SSTTS


SS
S

S

SSTT
TTSS

S
 .........780.........790.........800.........810.........820.........830.........840
Sequence DDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIAKEVKTSPDAKKCIAACTGVPDDKWEQTYKKPTGGIV
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Known secondary structure (DSSP) TT
GGGGGT





S

SGGGTTSTTS


T




GGGGGGGGTS

SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence TVRSEMGEPIHKIATRGVMLWKEFDETIFNLPKNKLVPTLEAKRDYIISRLNADFQKPWFATVNGQARDL
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Known secondary structure (DSSP)
TTS


TTTS
TTTTT
SS
BTTTT

G
 .........920.........930.........940.........950.........960.........970.........980
Sequence ATMTYEEVAKRLVELMFIRSTNSWFDVTWRTFTGDFLRRVEERFTKSKTLSLIQSYSLLDKPDEAIEKVF
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Known secondary structure (DSSP) GGSBTTTTS

SS



S
SSGGGGGS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence NAYPAAREQFLNAQDIDHFLSMCQNPMQKPVPFVPVLDRRFEIFFKKDSLWQSEHLEAVVDQDVQRTCIL
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Known secondary structure (DSSP) SGGGGTSB

TT
SSS


SSB


STTSS
SGGGG
GGGSTTS
GGGS

B
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence HGPVAAQFTKVIDEPIKSIMDGIHDGHIKKLLHQYYGDDESKIPAVEYFGGESPVDSAVFKATSSTDEES
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Known secondary structure (DSSP)

TTTTTT


TT

TT
GGGS
B
SS










TT

 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence WFKALAGSEINWRHASFLCSFITQDKMFVSNPIRKVFKPSQGMVVEISNGNTSSKTVVTLSEPVQGELKP
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Known secondary structure (DSSP)
SS
S

TT



TT
S
SSGGG
TT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence TVILKLLKENIIQMEMIENRTMDGKPVSLPLLYNFNPDNGFAPISEVMEDRNQRIKEMYWKLWIDEPFNL
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Known secondary structure (DSSP) TTT
S
SSSS

TT
TT



TT
SS



 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence DFDPRDVIKGKDFEITAKEVYDFTHAVGNNCEDFVSRPDRTMLAPMDFAIVVGWRAIIKAIFPNTVDGDL
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Known secondary structure (DSSP)


TTS




B

T


TTSS

TTS

B

GGGGGG
SGGG


G
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence LKLVHLSNGYKMIPGAKPLQVGDVVSTTAVIESVVNQPTGKIVDVVGTLSRNGKPVMEVTSSFFYRGNYT
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Known secondary structure (DSSP) GG
TT



BSS
B

SSTTS


 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence DFENTFQKTVEPVYQMHIKTSKDIAVLRSKEWFQLDDEDFDLLNKTLTFETETEVTFKNANIFSSVKCFG
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Known secondary structure (DSSP)
GGG


SSTTSSTT


TT
SSSSS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence PIKVELPTKETVEIGIVDYEAGASHGNPVVDFLKRNGSTLEQKVNLENPIPIAVLDSYTPSTNEPYARVS
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Known secondary structure (DSSP)
TTS
S
SS
TS




S
S
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence GDLNPIHVSRHFASYANLPGTITHGMFSSASVRALIENWAADSVSSRVRGYTCQFVDMVLPNTALKTSIQ
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Known secondary structure (DSSP) T


GGGT
TT
SSS


STT
GGG
S


SS
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence HVGMINGRKLIKFETRNEDDVVVLTGEAEIEQPVTTFVFTGQGSQEQGMGMDLYKTSKAAQDVWNRADNH
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Known secondary structure (DSSP) TT
TTS

S



TT


TTTT
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE
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Known secondary structure (DSSP) S

S

S

ST


TT

SSSS

TT


S
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence KGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMT
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Known secondary structure (DSSP) S
GGGSTT


TT

TT

S
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL
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Known secondary structure (DSSP) SS
B
SS

BS

TT

TS
TTT
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence DTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLFEIIDEASKKSAVKPRPLKLERGFACIPLVGISVPFH
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Known secondary structure (DSSP) TT

S
TS
TT





SS
TT

S

S
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence STYLMNGVKPFKSFLKKNIIKENVKVARLAGKYIPNLTAKPFQVTKEYFQDVYDLTGSEPIKEIIDNWEK
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Known secondary structure (DSSP) SGGGGTTSTTTTS
GGG

TTT
SSS
S



S

TTTT
 ...
Sequence YEQ
Predicted secondary structure

SS confidence


Known secondary structure (DSSP) T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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