Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	P	T	R	Y	A	R	I	C	E	M	L	A	R	R	Q	P	D	L	T	V	C	M	E	Q	V	H	K	P	H	N	V	S	A	I	I	R	T	A	D	A	V	G	V	H	E	V	H	A	V	W	P	G	S	R	M	R	T	M
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	S	A	A	A	G	S	N	S	W	V	Q	V	K	T	H	R	T	I	G	D	A	V	A	H	L	K	G	Q	G	M	Q	I	L	A	T	H	L	S	D	N	A	V	D	F	R	E	I	D	Y	T	R	P	T	C	I	L	M	G	Q
Secondary structure
SS confidence
Disorder			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	K	T	G	I	T	Q	E	A	L	A	L	A	D	Q	D	I	I	I	P	M	I	G	M	V	Q	S	L	N	V	S	V	A	S	A	L	I	L	Y	E	A	Q	R	Q	R	Q	N	A	G	M	Y	L	R	E	N	S	M	L	P	E
Secondary structure
SS confidence
Disorder																																																?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Sequence		A	E	Q	Q	R	L	L	F	E	G	G	Y	P	V	L	A	K	V	A	K	R	K	G	L	P	Y	P	H	V	N	Q	Q	G	E	I	E	A	D	A	D	W	W	A	T	M	Q	A	A	G
Secondary structure
SS confidence
Disorder																							?	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?									?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1zjr chain A Region: 1 - 197 Aligned: 195 Modelled: 195 Confidence: 100.0% Identity: 42% PDB header:transferase Chain: A: PDB Molecule:trna (guanosine-2'-o-)-methyltransferase; PDBTitle: crystal structure of a. aeolicus trmh/spou trna modifying enzyme Phyre2 PDB 1v2x chain A Region: 2 - 190 Aligned: 187 Modelled: 187 Confidence: 100.0% Identity: 53% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: SpoU-like RNA 2'-O ribose methyltransferase Phyre2 PDB 1gz0 chain A domain 1 Region: 7 - 165 Aligned: 158 Modelled: 159 Confidence: 100.0% Identity: 28% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: SpoU-like RNA 2'-O ribose methyltransferase Phyre2 PDB 1gz0 chain G Region: 7 - 165 Aligned: 158 Modelled: 151 Confidence: 100.0% Identity: 28% PDB header:transferase Chain: G: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh; PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb Phyre2 PDB 2ha8 chain A Region: 13 - 168 Aligned: 156 Modelled: 156 Confidence: 100.0% Identity: 22% PDB header:rna binding protein Chain: A: PDB Molecule:tar (hiv-1) rna loop binding protein; PDBTitle: methyltransferase domain of human tar (hiv-1) rna binding2 protein 1 Phyre2 PDB 1x7p chain B Region: 13 - 166 Aligned: 153 Modelled: 153 Confidence: 100.0% Identity: 29% PDB header:transferase Chain: B: PDB Molecule:rrna methyltransferase; PDBTitle: crystal structure of the spou methyltransferase avirb from2 streptomyces viridochromogenes in complex with the cofactor adomet Phyre2 PDB 1ipa chain A Region: 13 - 166 Aligned: 152 Modelled: 152 Confidence: 100.0% Identity: 28% PDB header:transferase Chain: A: PDB Molecule:rna 2'-o-ribose methyltransferase; PDBTitle: crystal structure of rna 2'-o ribose methyltransferase Phyre2 PDB 2i6d chain A Region: 14 - 164 Aligned: 151 Modelled: 150 Confidence: 100.0% Identity: 28% PDB header:transferase Chain: A: PDB Molecule:rna methyltransferase, trmh family; PDBTitle: the structure of a putative rna methyltransferase of the trmh family2 from porphyromonas gingivalis. Phyre2 PDB 3gyq chain B Region: 16 - 169 Aligned: 153 Modelled: 153 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: B: PDB Molecule:rrna (adenosine-2'-o-)-methyltransferase; PDBTitle: structure of the thiostrepton-resistance methyltransferase2 s-adenosyl-l-methionine complex Phyre2 PDB 1ipa chain A domain 1 Region: 13 - 167 Aligned: 153 Modelled: 153 Confidence: 100.0% Identity: 27% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: SpoU-like RNA 2'-O ribose methyltransferase Phyre2 PDB 3ic6 chain A Region: 13 - 197 Aligned: 178 Modelled: 175 Confidence: 100.0% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative methylase family protein; PDBTitle: crystal structure of putative methylase family protein from neisseria2 gonorrhoeae Phyre2 PDB 1mxi chain A Region: 20 - 171 Aligned: 149 Modelled: 149 Confidence: 100.0% Identity: 23% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: SpoU-like RNA 2'-O ribose methyltransferase Phyre2 PDB 3ilk chain B Region: 18 - 208 Aligned: 182 Modelled: 186 Confidence: 100.0% Identity: 18% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized trna/rrna methyltransferase hi0380; PDBTitle: the structure of a probable methylase family protein from haemophilus2 influenzae rd kw20 Phyre2 PDB 3onp chain A Region: 19 - 164 Aligned: 146 Modelled: 146 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:trna/rrna methyltransferase (spou); PDBTitle: crystal structure of trna/rrna methyltransferase spou from rhodobacter2 sphaeroides Phyre2 PDB 3e5y chain B Region: 20 - 169 Aligned: 136 Modelled: 136 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: B: PDB Molecule:trmh family rna methyltransferase; PDBTitle: crystal structure of trmh family rna methyltransferase from2 burkholderia pseudomallei Phyre2 PDB 3l8u chain A Region: 21 - 175 Aligned: 148 Modelled: 148 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: A: PDB Molecule:putative rrna methylase; PDBTitle: crystal structure of smu.1707c, a putative rrna methyltransferase from2 streptococcus mutans ua159 Phyre2 PDB 3kty chain A Region: 18 - 165 Aligned: 147 Modelled: 148 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:probable methyltransferase; PDBTitle: crystal structure of probable methyltransferase from bordetella2 pertussis tohama i Phyre2 PDB 3dcm chain X Region: 12 - 162 Aligned: 147 Modelled: 147 Confidence: 99.9% Identity: 18% PDB header:transferase Chain: X: PDB Molecule:uncharacterized protein tm_1570; PDBTitle: crystal structure of the thermotoga maritima spout family2 rna-methyltransferase protein tm1570 in complex with s-3 adenosyl-l-methionine Phyre2 PDB 1vhk chain A domain 2 Region: 14 - 165 Aligned: 150 Modelled: 150 Confidence: 97.4% Identity: 15% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: YggJ C-terminal domain-like Phyre2 PDB 1vhk chain A Region: 14 - 161 Aligned: 146 Modelled: 146 Confidence: 97.0% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yqeu; PDBTitle: crystal structure of an hypothetical protein Phyre2 1 c1zjrA_ 2 d1v2xa_ 3 d1gz0a1 4 c1gz0G_ 5 c2ha8A_ 6 c1x7pB_ 7 c1ipaA_ 8 c2i6dA_ 9 c3gyqB_ 10 d1ipaa1 11 c3ic6A_ 12 d1mxia_ 13 c3ilkB_ 14 c3onpA_ 15 c3e5yB_ 16 c3l8uA_ 17 c3ktyA_ 18 c3dcmX_ 19 d1vhka2 20 c1vhkA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1zjrA_ 100.0 42 PDB header:transferase Chain: A: PDB Molecule:trna (guanosine-2'-o-)-methyltransferase; PDBTitle: crystal structure of a. aeolicus trmh/spou trna modifying enzyme 2 d1v2xa_ 100.0 53 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 3 d1gz0a1 100.0 28 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 4 c1gz0G_ 100.0 28 PDB header:transferase Chain: G: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh; PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb 5 c2ha8A_ 100.0 22 PDB header:rna binding protein Chain: A: PDB Molecule:tar (hiv-1) rna loop binding protein; PDBTitle: methyltransferase domain of human tar (hiv-1) rna binding2 protein 1 6 c1x7pB_ 100.0 29 PDB header:transferase Chain: B: PDB Molecule:rrna methyltransferase; PDBTitle: crystal structure of the spou methyltransferase avirb from2 streptomyces viridochromogenes in complex with the cofactor adomet 7 c1ipaA_ 100.0 28 PDB header:transferase Chain: A: PDB Molecule:rna 2'-o-ribose methyltransferase; PDBTitle: crystal structure of rna 2'-o ribose methyltransferase 8 c2i6dA_ 100.0 28 PDB header:transferase Chain: A: PDB Molecule:rna methyltransferase, trmh family; PDBTitle: the structure of a putative rna methyltransferase of the trmh family2 from porphyromonas gingivalis. 9 c3gyqB_ 100.0 24 PDB header:transferase Chain: B: PDB Molecule:rrna (adenosine-2'-o-)-methyltransferase; PDBTitle: structure of the thiostrepton-resistance methyltransferase2 s-adenosyl-l-methionine complex 10 d1ipaa1 100.0 27 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 11 c3ic6A_ 100.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative methylase family protein; PDBTitle: crystal structure of putative methylase family protein from neisseria2 gonorrhoeae 12 d1mxia_ 100.0 23 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 13 c3ilkB_ 100.0 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized trna/rrna methyltransferase hi0380; PDBTitle: the structure of a probable methylase family protein from haemophilus2 influenzae rd kw20 14 c3onpA_ 100.0 23 PDB header:transferase Chain: A: PDB Molecule:trna/rrna methyltransferase (spou); PDBTitle: crystal structure of trna/rrna methyltransferase spou from rhodobacter2 sphaeroides 15 c3e5yB_ 100.0 24 PDB header:transferase Chain: B: PDB Molecule:trmh family rna methyltransferase; PDBTitle: crystal structure of trmh family rna methyltransferase from2 burkholderia pseudomallei 16 c3l8uA_ 100.0 24 PDB header:transferase Chain: A: PDB Molecule:putative rrna methylase; PDBTitle: crystal structure of smu.1707c, a putative rrna methyltransferase from2 streptococcus mutans ua159 17 c3ktyA_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:probable methyltransferase; PDBTitle: crystal structure of probable methyltransferase from bordetella2 pertussis tohama i 18 c3dcmX_ 99.9 18 PDB header:transferase Chain: X: PDB Molecule:uncharacterized protein tm_1570; PDBTitle: crystal structure of the thermotoga maritima spout family2 rna-methyltransferase protein tm1570 in complex with s-3 adenosyl-l-methionine 19 d1vhka2 97.4 15 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 20 c1vhkA_ 97.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yqeu; PDBTitle: crystal structure of an hypothetical protein 21 c2yy8B_ not modelled 96.6 18 PDB header:transferase Chain: B: PDB Molecule:upf0106 protein ph0461; PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine 22 c3kw2A_ not modelled 96.4 13 PDB header:transferase Chain: A: PDB Molecule:probable r-rna methyltransferase; PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis 23 c2egwB_ not modelled 96.3 10 PDB header:rna methyltransferase Chain: B: PDB Molecule:upf0088 protein aq_165; PDBTitle: crystal structure of rrna methyltransferase with sah ligand 24 c3ai9X_ not modelled 96.2 16 PDB header:transferase Chain: X: PDB Molecule:upf0217 protein mj1640; PDBTitle: crystal structure of duf358 protein reveals a putative spout-class2 rrna methyltransferase 25 d1nxza2 not modelled 96.2 10 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 26 d2o3aa1 not modelled 95.4 18 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF0751-like 27 c1vhyB_ not modelled 94.7 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein hi0303; PDBTitle: crystal structure of haemophilus influenzae protein hi0303, pfam2 duf558 28 d2qwva1 not modelled 94.3 15 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like 29 d1v6za2 not modelled 92.3 21 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 30 d2qmma1 not modelled 88.1 14 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like 31 c2cx8B_ not modelled 86.9 19 PDB header:transferase Chain: B: PDB Molecule:methyl transferase; PDBTitle: crystal structure of methyltransferase with ligand(sah) 32 c1z85B_ not modelled 60.9 12 PDB header:transferase Chain: B: PDB Molecule:hypothetical protein tm1380; PDBTitle: crystal structure of a predicted rna methyltransferase (tm1380) from2 thermotoga maritima msb8 at 2.12 a resolution 33 c1k3rA_ not modelled 49.6 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein mt0001; PDBTitle: crystal structure of the methyltransferase with a knot from2 methanobacterium thermoautotrophicum 34 d1ml4a2 not modelled 47.2 13 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 35 d1a9xa3 not modelled 40.3 12 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 36 c2v3jA_ not modelled 39.2 16 PDB header:ribosomal protein Chain: A: PDB Molecule:essential for mitotic growth 1; PDBTitle: the yeast ribosome synthesis factor emg1 alpha beta knot2 fold methyltransferase 37 d2b7oa1 not modelled 38.7 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class-II DAHP synthetase 38 d1o6da_ not modelled 38.6 26 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 39 d1j6ua2 not modelled 31.8 11 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 40 d1to0a_ not modelled 31.0 14 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 41 d1k3ra2 not modelled 30.7 26 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:Hypothetical protein MTH1 (MT0001), dimerisation domain 42 c1j6uA_ not modelled 30.0 13 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc; PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase2 murc (tm0231) from thermotoga maritima at 2.3 a resolution 43 d1vh0a_ not modelled 29.8 11 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 44 d1ns5a_ not modelled 29.6 26 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 45 d1mx3a1 not modelled 29.3 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 46 d1ekxa2 not modelled 28.9 15 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 47 c2omeA_ not modelled 27.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:c-terminal-binding protein 2; PDBTitle: crystal structure of human ctbp2 dehydrogenase complexed with nad(h) 48 d1qpoa1 not modelled 25.7 9 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 49 c2wl8D_ not modelled 25.7 14 PDB header:protein transport Chain: D: PDB Molecule:peroxisomal biogenesis factor 19; PDBTitle: x-ray crystal structure of pex19p 50 d1o4ua1 not modelled 25.1 16 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 51 c3gg9C_ not modelled 24.8 6 PDB header:oxidoreductase Chain: C: PDB Molecule:d-3-phosphoglycerate dehydrogenase oxidoreductase protein; PDBTitle: crystal structure of putative d-3-phosphoglycerate dehydrogenase2 oxidoreductase from ralstonia solanacearum 52 c3o7bA_ not modelled 23.2 16 PDB header:transferase Chain: A: PDB Molecule:ribosome biogenesis nep1 rna methyltransferase; PDBTitle: crystal structure of archaeoglobus fulgidus nep1 bound to s-2 adenosylhomocysteine 53 c3czpA_ not modelled 21.2 22 PDB header:transferase Chain: A: PDB Molecule:putative polyphosphate kinase 2; PDBTitle: crystal structure of putative polyphosphate kinase 2 from pseudomonas2 aeruginosa pa01 54 c1qpoA_ not modelled 20.4 9 PDB header:transferase Chain: A: PDB Molecule:quinolinate acid phosphoribosyl transferase; PDBTitle: quinolinate phosphoribosyl transferase (qaprtase) apo-enzyme from2 mycobacterium tuberculosis 55 c2y0fD_ not modelled 19.9 29 PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27 56 c2o8vA_ not modelled 19.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:phosphoadenosine phosphosulfate reductase; PDBTitle: paps reductase in a covalent complex with thioredoxin c35a 57 c2oq2B_ not modelled 19.0 15 PDB header:oxidoreductase Chain: B: PDB Molecule:phosphoadenosine phosphosulfate reductase; PDBTitle: crystal structure of yeast paps reductase with pap, a product complex 58 d1sura_ not modelled 18.1 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PAPS reductase-like 59 c2x3yA_ not modelled 18.0 19 PDB header:isomerase Chain: A: PDB Molecule:phosphoheptose isomerase; PDBTitle: crystal structure of gmha from burkholderia pseudomallei 60 c2yqeA_ not modelled 17.7 15 PDB header:dna binding protein Chain: A: PDB Molecule:jumonji/arid domain-containing protein 1d; PDBTitle: solution structure of the arid domain of jarid1d protein 61 d1nkua_ not modelled 17.3 29 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase I (Tag) 62 c2jg6A_ not modelled 16.8 25 PDB header:hydrolase Chain: A: PDB Molecule:dna-3-methyladenine glycosidase; PDBTitle: crystal structure of a 3-methyladenine dna glycosylase i2 from staphylococcus aureus 63 c3ajfA_ not modelled 16.6 25 PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: structural insigths into dsrna binding and rna silencing suppression2 by ns3 protein of rice hoja blanca tenuivirus 64 c2zy3A_ not modelled 16.4 26 PDB header:lyase Chain: A: PDB Molecule:l-aspartate beta-decarboxylase; PDBTitle: dodecameric l-aspartate beta-decarboxylase 65 c2w2kB_ not modelled 16.3 10 PDB header:oxidoreductase Chain: B: PDB Molecule:d-mandelate dehydrogenase; PDBTitle: crystal structure of the apo forms of rhodotorula graminis2 d-mandelate dehydrogenase at 1.8a. 66 c3q4gA_ not modelled 16.2 17 PDB header:ligase Chain: A: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nad synthetase from vibrio cholerae 67 c1dvpA_ not modelled 15.3 16 PDB header:transferase Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction 68 c2fe3B_ not modelled 15.1 19 PDB header:dna binding protein Chain: B: PDB Molecule:peroxide operon regulator; PDBTitle: the crystal structure of bacillus subtilis perr-zn reveals a novel2 zn(cys)4 structural redox switch 69 c2b7pA_ not modelled 14.9 11 PDB header:transferase Chain: A: PDB Molecule:probable nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of quinolinic acid phosphoribosyltransferase from2 helicobacter pylori 70 d2f06a1 not modelled 14.8 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 71 d2v3ka1 not modelled 14.5 17 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:EMG1/NEP1-like 72 c2jbmA_ not modelled 14.5 13 PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: qprtase structure from human 73 c3mwmA_ not modelled 14.4 13 PDB header:transcription Chain: A: PDB Molecule:putative metal uptake regulation protein; PDBTitle: graded expression of zinc-responsive genes through two regulatory2 zinc-binding sites in zur 74 d1e8ca2 not modelled 14.4 8 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 75 d1x7da_ not modelled 13.4 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Ornithine cyclodeaminase-like 76 c2qipA_ not modelled 13.4 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein of unknown function vpa0982; PDBTitle: crystal structure of a protein of unknown function vpa0982 from vibrio2 parahaemolyticus rimd 2210633 77 d1o17a2 not modelled 12.8 45 Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 78 c2o03A_ not modelled 12.6 15 PDB header:gene regulation Chain: A: PDB Molecule:probable zinc uptake regulation protein furb; PDBTitle: crystal structure of furb from m. tuberculosis- a zinc uptake2 regulator 79 c3fxaA_ not modelled 12.5 12 PDB header:sugar binding protein Chain: A: PDB Molecule:sis domain protein; PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution 80 c2goyC_ not modelled 12.4 19 PDB header:oxidoreductase Chain: C: PDB Molecule:adenosine phosphosulfate reductase; PDBTitle: crystal structure of assimilatory adenosine 5'-2 phosphosulfate reductase with bound aps 81 d2gy9b1 not modelled 12.3 23 Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2 82 d1dvpa1 not modelled 12.1 19 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 83 c2nacA_ not modelled 11.8 12 PDB header:oxidoreductase(aldehyde(d),nad+(a)) Chain: A: PDB Molecule:nad-dependent formate dehydrogenase; PDBTitle: high resolution structures of holo and apo formate dehydrogenase 84 d1pg5a2 not modelled 11.3 13 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 85 c2zkqb_ not modelled 11.2 18 PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 86 c3navB_ not modelled 10.8 7 PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961 87 d1q9ua_ not modelled 10.4 21 Fold:TBP-like Superfamily:TT1751-like Family:TT1751-like 88 c1x3lA_ not modelled 10.3 22 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ph0495; PDBTitle: crystal structure of the ph0495 protein from pyrococccus horikoshii2 ot3 89 d1oaoc_ not modelled 10.0 15 Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Acetyl-CoA synthase 90 c1o4uA_ not modelled 9.2 16 PDB header:transferase Chain: A: PDB Molecule:type ii quinolic acid phosphoribosyltransferase; PDBTitle: crystal structure of a nicotinate nucleotide pyrophosphorylase2 (tm1645) from thermotoga maritima at 2.50 a resolution 91 d1kkxa_ not modelled 9.2 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:ARID-like Family:ARID domain 92 c3hpbA_ not modelled 9.2 23 PDB header:protein transport Chain: A: PDB Molecule:snx5 protein; PDBTitle: crystal structure of snx5-px domain in p212121 space group 93 c3bchA_ not modelled 9.1 21 PDB header:cell adhesion, ribosomal protein Chain: A: PDB Molecule:40s ribosomal protein sa; PDBTitle: crystal structure of the human laminin receptor precursor 94 d1duvg2 not modelled 9.1 10 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 95 d1hjra_ not modelled 8.9 33 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:RuvC resolvase 96 d1dxya1 not modelled 8.9 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 97 c2kwuA_ not modelled 8.7 40 PDB header:protein binding/signaling protein Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: solution structure of ubm2 of murine polymerase iota in complex with2 ubiquitin 98 c3l0gD_ not modelled 8.7 11 PDB header:transferase Chain: D: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of nicotinate-nucleotide pyrophosphorylase from2 ehrlichia chaffeensis at 2.05a resolution 99 c3bbnB_ not modelled 8.7 13 PDB header:ribosome Chain: B: PDB Molecule:ribosomal protein s2; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0