PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2v3jA_

Fold library id	PDB Header	Molecule	Title
c2v3jA_	PDB header: ribosomal protein	Chain: A: PDB Molecule: essential for mitotic growth 1;	PDBTitle: the yeast ribosome synthesis factor emg1 alpha beta knot2 fold methyltransferase

Links to external resources
Added to library: Tue Mar 16 14:12:20 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L V P Q A P P V L T S K D K I T K R X I V V L A X A S L E T H K I Y V L L N C D D H Q G L L K K X G R D I S E A R P D I T H Q C L L T L L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S S S
T T T
T T
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S P I N K A G K L Q V Y I Q T S R G I L I E V N P T V R I P R T F K R F S G L X V Q L L H K L S I R S E E K L L K V I K N P I T D H L P T K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T
T T S
T T
S S S
S
G G G T S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence C R K V T L S F D A P V I R V Q D Y I E K L D D D E S I C V F V G A X A R G K D N F A D E Y V D E K V G L S N Y P L S A S V A C S K F C H G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
B
T S
T T
S S S
T T T T T T T
S
B S
S S

. . . . . . .

Sequence A E D A W N I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	V	P	Q	A	P	P	V	L	T	S	K	D	K	I	T	K	R	X	I	V	V	L	A	X	A	S	L	E	T	H	K	I	Y	V	L	L	N	C	D	D	H	Q	G	L	L	K	K	X	G	R	D	I	S	E	A	R	P	D	I	T	H	Q	C	L	L	T	L	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S						T	T		S	S	S																							T	T	T								T	T			G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	P	I	N	K	A	G	K	L	Q	V	Y	I	Q	T	S	R	G	I	L	I	E	V	N	P	T	V	R	I	P	R	T	F	K	R	F	S	G	L	X	V	Q	L	L	H	K	L	S	I	R	S	E	E	K	L	L	K	V	I	K	N	P	I	T	D	H	L	P	T	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S					T	T									T	T	S							T	T					S	S															S														S		G	G	G	T	S		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	C	R	K	V	T	L	S	F	D	A	P	V	I	R	V	Q	D	Y	I	E	K	L	D	D	D	E	S	I	C	V	F	V	G	A	X	A	R	G	K	D	N	F	A	D	E	Y	V	D	E	K	V	G	L	S	N	Y	P	L	S	A	S	V	A	C	S	K	F	C	H	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S		B									T	S		T	T										S	S	S			T	T	T	T	T	T	T		S				B	S		S	S
	.	.	.	.	.	.	.
Sequence	A	E	D	A	W	N	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T