Phyre 2 alignment of P0AGJ2 with c3bbnB_

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Job Description | P0AGJ2
Confidence | 8.69% | Date | Thu Jan 5 11:29:18 GMT 2012
Rank | 99 | Aligned Residues | 39
% Identity | 13% | Template | c3bbnB_
PDB info | PDB header:ribosome | Chain: B: PDB Molecule:ribosomal protein s2; | PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome.
Resolution | 9.40 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | R | R | Q | P | D | L | T | V | C | M | E | Q | V | H | K | P | H | N | V | S | A | I | I | R | T | A | D | A | V | G | V | H | E | V | H | A | V | W | P | G | S | R | M
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | T | G | L | P | D | I | V | I | I | V | D | Q | Q | E | E | . | . | . | . | Y | T | A | L | R | E | C | I | T | L | G | I | P | T | I | C | L | I | D | T | N | C | N | P
Template Known Secondary structure |  |  | S |  |  | S |  |  |  |  | S |  | T | T | T | T | . | . | . | . |  |  |  |  |  |  |  |  | T | T | T |  |  |  |  |  |  |  |  | S | S | S |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 159 | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . |  |  |  |  | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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