Phyre 2 Results for P0AGJ2

Email | l.a.kelley@imperial.ac.uk
Description | P0AGJ2
Date | Thu Jan 5 11:29:18 GMT 2012
Unique Job ID | 03822049b05be78c

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1zjrA_ |
|  | 100.0 | 42 | PDB header:transferase Chain: A: PDB Molecule:trna (guanosine-2'-o-)-methyltransferase; PDBTitle: crystal structure of a. aeolicus trmh/spou trna modifying enzyme
2 | d1v2xa_ |
|  | 100.0 | 53 | Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase
3 | d1gz0a1 |
|  | 100.0 | 28 | Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase
4 | c1gz0G_ |
|  | 100.0 | 28 | PDB header:transferase Chain: G: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh; PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb
5 | c2ha8A_ |
|  | 100.0 | 22 | PDB header:rna binding protein Chain: A: PDB Molecule:tar (hiv-1) rna loop binding protein; PDBTitle: methyltransferase domain of human tar (hiv-1) rna binding2 protein 1
6 | c1x7pB_ |
|  | 100.0 | 29 | PDB header:transferase Chain: B: PDB Molecule:rrna methyltransferase; PDBTitle: crystal structure of the spou methyltransferase avirb from2 streptomyces viridochromogenes in complex with the cofactor adomet
7 | c1ipaA_ |
|  | 100.0 | 28 | PDB header:transferase Chain: A: PDB Molecule:rna 2'-o-ribose methyltransferase; PDBTitle: crystal structure of rna 2'-o ribose methyltransferase
8 | c2i6dA_ |
|  | 100.0 | 28 | PDB header:transferase Chain: A: PDB Molecule:rna methyltransferase, trmh family; PDBTitle: the structure of a putative rna methyltransferase of the trmh family2 from porphyromonas gingivalis.
9 | c3gyqB_ |
|  | 100.0 | 24 | PDB header:transferase Chain: B: PDB Molecule:rrna (adenosine-2'-o-)-methyltransferase; PDBTitle: structure of the thiostrepton-resistance methyltransferase2 s-adenosyl-l-methionine complex
10 | d1ipaa1 |
|  | 100.0 | 27 | Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase
11 | c3ic6A_ |
|  | 100.0 | 16 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative methylase family protein; PDBTitle: crystal structure of putative methylase family protein from neisseria2 gonorrhoeae
12 | d1mxia_ |
|  | 100.0 | 23 | Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase
13 | c3ilkB_ |
|  | 100.0 | 18 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized trna/rrna methyltransferase hi0380; PDBTitle: the structure of a probable methylase family protein from haemophilus2 influenzae rd kw20
14 | c3onpA_ |
|  | 100.0 | 23 | PDB header:transferase Chain: A: PDB Molecule:trna/rrna methyltransferase (spou); PDBTitle: crystal structure of trna/rrna methyltransferase spou from rhodobacter2 sphaeroides
15 | c3e5yB_ |
|  | 100.0 | 24 | PDB header:transferase Chain: B: PDB Molecule:trmh family rna methyltransferase; PDBTitle: crystal structure of trmh family rna methyltransferase from2 burkholderia pseudomallei
16 | c3l8uA_ |
|  | 100.0 | 24 | PDB header:transferase Chain: A: PDB Molecule:putative rrna methylase; PDBTitle: crystal structure of smu.1707c, a putative rrna methyltransferase from2 streptococcus mutans ua159
17 | c3ktyA_ |
|  | 100.0 | 21 | PDB header:transferase Chain: A: PDB Molecule:probable methyltransferase; PDBTitle: crystal structure of probable methyltransferase from bordetella2 pertussis tohama i
18 | c3dcmX_ |
|  | 99.9 | 18 | PDB header:transferase Chain: X: PDB Molecule:uncharacterized protein tm_1570; PDBTitle: crystal structure of the thermotoga maritima spout family2 rna-methyltransferase protein tm1570 in complex with s-3 adenosyl-l-methionine
19 | d1vhka2 |
|  | 97.4 | 15 | Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like
20 | c1vhkA_ |
|  | 97.0 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yqeu; PDBTitle: crystal structure of an hypothetical protein
21 | c2yy8B_ |
| not modelled | 96.6 | 18 | PDB header:transferase Chain: B: PDB Molecule:upf0106 protein ph0461; PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine
22 | c3kw2A_ |
| not modelled | 96.4 | 13 | PDB header:transferase Chain: A: PDB Molecule:probable r-rna methyltransferase; PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis
23 | c2egwB_ |
| not modelled | 96.3 | 10 | PDB header:rna methyltransferase Chain: B: PDB Molecule:upf0088 protein aq_165; PDBTitle: crystal structure of rrna methyltransferase with sah ligand
24 | c3ai9X_ |
| not modelled | 96.2 | 16 | PDB header:transferase Chain: X: PDB Molecule:upf0217 protein mj1640; PDBTitle: crystal structure of duf358 protein reveals a putative spout-class2 rrna methyltransferase
25 | d1nxza2 |
| not modelled | 96.2 | 10 | Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like
26 | d2o3aa1 |
| not modelled | 95.4 | 18 | Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF0751-like
27 | c1vhyB_ |
| not modelled | 94.7 | 14 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein hi0303; PDBTitle: crystal structure of haemophilus influenzae protein hi0303, pfam2 duf558
28 | d2qwva1 |
| not modelled | 94.3 | 15 | Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like
29 | d1v6za2 |
| not modelled | 92.3 | 21 | Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like
30 | d2qmma1 |
| not modelled | 88.1 | 14 | Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like
31 | c2cx8B_ |
| not modelled | 86.9 | 19 | PDB header:transferase Chain: B: PDB Molecule:methyl transferase; PDBTitle: crystal structure of methyltransferase with ligand(sah)
32 | c1z85B_ |
| not modelled | 60.9 | 12 | PDB header:transferase Chain: B: PDB Molecule:hypothetical protein tm1380; PDBTitle: crystal structure of a predicted rna methyltransferase (tm1380) from2 thermotoga maritima msb8 at 2.12 a resolution
33 | c1k3rA_ |
| not modelled | 49.6 | 25 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein mt0001; PDBTitle: crystal structure of the methyltransferase with a knot from2 methanobacterium thermoautotrophicum
34 | d1ml4a2 |
| not modelled | 47.2 | 13 | Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase
35 | d1a9xa3 |
| not modelled | 40.3 | 12 | Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like
36 | c2v3jA_ |
| not modelled | 39.2 | 16 | PDB header:ribosomal protein Chain: A: PDB Molecule:essential for mitotic growth 1; PDBTitle: the yeast ribosome synthesis factor emg1 alpha beta knot2 fold methyltransferase
37 | d2b7oa1 |
| not modelled | 38.7 | 17 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class-II DAHP synthetase
38 | d1o6da_ |
| not modelled | 38.6 | 26 | Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like
39 | d1j6ua2 |
| not modelled | 31.8 | 11 | Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain
40 | d1to0a_ |
| not modelled | 31.0 | 14 | Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like
41 | d1k3ra2 |
| not modelled | 30.7 | 26 | Fold:alpha/beta knot Superfamily:alpha/beta knot Family:Hypothetical protein MTH1 (MT0001), dimerisation domain
42 | c1j6uA_ |
| not modelled | 30.0 | 13 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc; PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase2 murc (tm0231) from thermotoga maritima at 2.3 a resolution
43 | d1vh0a_ |
| not modelled | 29.8 | 11 | Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like
44 | d1ns5a_ |
| not modelled | 29.6 | 26 | Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like
45 | d1mx3a1 |
| not modelled | 29.3 | 16 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain
46 | d1ekxa2 |
| not modelled | 28.9 | 15 | Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase
47 | c2omeA_ |
| not modelled | 27.0 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:c-terminal-binding protein 2; PDBTitle: crystal structure of human ctbp2 dehydrogenase complexed with nad(h)
48 | d1qpoa1 |
| not modelled | 25.7 | 9 | Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like
49 | c2wl8D_ |
| not modelled | 25.7 | 14 | PDB header:protein transport Chain: D: PDB Molecule:peroxisomal biogenesis factor 19; PDBTitle: x-ray crystal structure of pex19p
50 | d1o4ua1 |
| not modelled | 25.1 | 16 | Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like
51 | c3gg9C_ |
| not modelled | 24.8 | 6 | PDB header:oxidoreductase Chain: C: PDB Molecule:d-3-phosphoglycerate dehydrogenase oxidoreductase protein; PDBTitle: crystal structure of putative d-3-phosphoglycerate dehydrogenase2 oxidoreductase from ralstonia solanacearum
52 | c3o7bA_ |
| not modelled | 23.2 | 16 | PDB header:transferase Chain: A: PDB Molecule:ribosome biogenesis nep1 rna methyltransferase; PDBTitle: crystal structure of archaeoglobus fulgidus nep1 bound to s-2 adenosylhomocysteine
53 | c3czpA_ |
| not modelled | 21.2 | 22 | PDB header:transferase Chain: A: PDB Molecule:putative polyphosphate kinase 2; PDBTitle: crystal structure of putative polyphosphate kinase 2 from pseudomonas2 aeruginosa pa01
54 | c1qpoA_ |
| not modelled | 20.4 | 9 | PDB header:transferase Chain: A: PDB Molecule:quinolinate acid phosphoribosyl transferase; PDBTitle: quinolinate phosphoribosyl transferase (qaprtase) apo-enzyme from2 mycobacterium tuberculosis
55 | c2y0fD_ |
| not modelled | 19.9 | 29 | PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27
56 | c2o8vA_ |
| not modelled | 19.8 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:phosphoadenosine phosphosulfate reductase; PDBTitle: paps reductase in a covalent complex with thioredoxin c35a
57 | c2oq2B_ |
| not modelled | 19.0 | 15 | PDB header:oxidoreductase Chain: B: PDB Molecule:phosphoadenosine phosphosulfate reductase; PDBTitle: crystal structure of yeast paps reductase with pap, a product complex
58 | d1sura_ |
| not modelled | 18.1 | 15 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PAPS reductase-like
59 | c2x3yA_ |
| not modelled | 18.0 | 19 | PDB header:isomerase Chain: A: PDB Molecule:phosphoheptose isomerase; PDBTitle: crystal structure of gmha from burkholderia pseudomallei
60 | c2yqeA_ |
| not modelled | 17.7 | 15 | PDB header:dna binding protein Chain: A: PDB Molecule:jumonji/arid domain-containing protein 1d; PDBTitle: solution structure of the arid domain of jarid1d protein
61 | d1nkua_ |
| not modelled | 17.3 | 29 | Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase I (Tag)
62 | c2jg6A_ |
| not modelled | 16.8 | 25 | PDB header:hydrolase Chain: A: PDB Molecule:dna-3-methyladenine glycosidase; PDBTitle: crystal structure of a 3-methyladenine dna glycosylase i2 from staphylococcus aureus
63 | c3ajfA_ |
| not modelled | 16.6 | 25 | PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: structural insigths into dsrna binding and rna silencing suppression2 by ns3 protein of rice hoja blanca tenuivirus
64 | c2zy3A_ |
| not modelled | 16.4 | 26 | PDB header:lyase Chain: A: PDB Molecule:l-aspartate beta-decarboxylase; PDBTitle: dodecameric l-aspartate beta-decarboxylase
65 | c2w2kB_ |
| not modelled | 16.3 | 10 | PDB header:oxidoreductase Chain: B: PDB Molecule:d-mandelate dehydrogenase; PDBTitle: crystal structure of the apo forms of rhodotorula graminis2 d-mandelate dehydrogenase at 1.8a.
66 | c3q4gA_ |
| not modelled | 16.2 | 17 | PDB header:ligase Chain: A: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nad synthetase from vibrio cholerae
67 | c1dvpA_ |
| not modelled | 15.3 | 16 | PDB header:transferase Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction
68 | c2fe3B_ |
| not modelled | 15.1 | 19 | PDB header:dna binding protein Chain: B: PDB Molecule:peroxide operon regulator; PDBTitle: the crystal structure of bacillus subtilis perr-zn reveals a novel2 zn(cys)4 structural redox switch
69 | c2b7pA_ |
| not modelled | 14.9 | 11 | PDB header:transferase Chain: A: PDB Molecule:probable nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of quinolinic acid phosphoribosyltransferase from2 helicobacter pylori
70 | d2f06a1 |
| not modelled | 14.8 | 17 | Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like
71 | d2v3ka1 |
| not modelled | 14.5 | 17 | Fold:alpha/beta knot Superfamily:alpha/beta knot Family:EMG1/NEP1-like
72 | c2jbmA_ |
| not modelled | 14.5 | 13 | PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: qprtase structure from human
73 | c3mwmA_ |
| not modelled | 14.4 | 13 | PDB header:transcription Chain: A: PDB Molecule:putative metal uptake regulation protein; PDBTitle: graded expression of zinc-responsive genes through two regulatory2 zinc-binding sites in zur
74 | d1e8ca2 |
| not modelled | 14.4 | 8 | Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain
75 | d1x7da_ |
| not modelled | 13.4 | 15 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Ornithine cyclodeaminase-like
76 | c2qipA_ |
| not modelled | 13.4 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein of unknown function vpa0982; PDBTitle: crystal structure of a protein of unknown function vpa0982 from vibrio2 parahaemolyticus rimd 2210633
77 | d1o17a2 |
| not modelled | 12.8 | 45 | Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
78 | c2o03A_ |
| not modelled | 12.6 | 15 | PDB header:gene regulation Chain: A: PDB Molecule:probable zinc uptake regulation protein furb; PDBTitle: crystal structure of furb from m. tuberculosis- a zinc uptake2 regulator
79 | c3fxaA_ |
| not modelled | 12.5 | 12 | PDB header:sugar binding protein Chain: A: PDB Molecule:sis domain protein; PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution
80 | c2goyC_ |
| not modelled | 12.4 | 19 | PDB header:oxidoreductase Chain: C: PDB Molecule:adenosine phosphosulfate reductase; PDBTitle: crystal structure of assimilatory adenosine 5'-2 phosphosulfate reductase with bound aps
81 | d2gy9b1 |
| not modelled | 12.3 | 23 | Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2
82 | d1dvpa1 |
| not modelled | 12.1 | 19 | Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain
83 | c2nacA_ |
| not modelled | 11.8 | 12 | PDB header:oxidoreductase(aldehyde(d),nad+(a)) Chain: A: PDB Molecule:nad-dependent formate dehydrogenase; PDBTitle: high resolution structures of holo and apo formate dehydrogenase
84 | d1pg5a2 |
| not modelled | 11.3 | 13 | Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase
85 | c2zkqb_ |
| not modelled | 11.2 | 18 | PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
86 | c3navB_ |
| not modelled | 10.8 | 7 | PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961
87 | d1q9ua_ |
| not modelled | 10.4 | 21 | Fold:TBP-like Superfamily:TT1751-like Family:TT1751-like
88 | c1x3lA_ |
| not modelled | 10.3 | 22 | PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ph0495; PDBTitle: crystal structure of the ph0495 protein from pyrococccus horikoshii2 ot3
89 | d1oaoc_ |
| not modelled | 10.0 | 15 | Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Acetyl-CoA synthase
90 | c1o4uA_ |
| not modelled | 9.2 | 16 | PDB header:transferase Chain: A: PDB Molecule:type ii quinolic acid phosphoribosyltransferase; PDBTitle: crystal structure of a nicotinate nucleotide pyrophosphorylase2 (tm1645) from thermotoga maritima at 2.50 a resolution
91 | d1kkxa_ |
| not modelled | 9.2 | 14 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:ARID-like Family:ARID domain
92 | c3hpbA_ |
| not modelled | 9.2 | 23 | PDB header:protein transport Chain: A: PDB Molecule:snx5 protein; PDBTitle: crystal structure of snx5-px domain in p212121 space group
93 | c3bchA_ |
| not modelled | 9.1 | 21 | PDB header:cell adhesion, ribosomal protein Chain: A: PDB Molecule:40s ribosomal protein sa; PDBTitle: crystal structure of the human laminin receptor precursor
94 | d1duvg2 |
| not modelled | 9.1 | 10 | Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase
95 | d1hjra_ |
| not modelled | 8.9 | 33 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:RuvC resolvase
96 | d1dxya1 |
| not modelled | 8.9 | 11 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain
97 | c2kwuA_ |
| not modelled | 8.7 | 40 | PDB header:protein binding/signaling protein Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: solution structure of ubm2 of murine polymerase iota in complex with2 ubiquitin
98 | c3l0gD_ |
| not modelled | 8.7 | 11 | PDB header:transferase Chain: D: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of nicotinate-nucleotide pyrophosphorylase from2 ehrlichia chaffeensis at 2.05a resolution
99 | c3bbnB_ |
| not modelled | 8.7 | 13 | PDB header:ribosome Chain: B: PDB Molecule:ribosomal protein s2; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome.