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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2020 Feb 01

Fold library idPDB HeaderMoleculeTitle
c6s6qD_ 2.95 signaling protein Chain: D: protein casparian strip integrity factor 2;
c6rirD_ 1.77 signaling protein Chain: D: rilp-like protein 2;
c6syjC_ 0.81 structural protein Chain: C: prom2 containing collagen model peptide.;
c6valH_ 3.87 membrane protein Chain: H: green fluorescent protein, calhm1,calmh2 chimera;
c6t9iG_ 3.90 gene regulation Chain: G: transcription initiation factor tfiid subunit 10;
c6slkB_ 2.20 transferase Chain: B: l-2,4-diaminobutyric acid acetyltransferase;
c6vbu4_ 3.10 protein transport Chain: 4: bardet-biedl syndrome 4 protein homolog;
c6tb4I_ 3.80 transcription Chain: I: subunit (17 kda) of tfiid and saga complexes, involved in
c6s31A_ 1.63 flavoprotein Chain: A: nadph2 dehydrogenase-like protein;
c6nq3F_ 2.89 transcription Chain: F: polycomb protein suz12;
c6pyxB_ 2.60 protein transport Chain: B: cdna flj56608, highly similar to homo sapiens chloride
c6vh5C_ 2.40 hydrolase Chain: C: prephenate dehydratase:amino acid-binding act;
c6nsnB_ 2.60 transcription/dna Chain: B: copper outer membrane regulator;
c6i1aA_ 1.27 hydrolase Chain: A: rutinosidase;
c6u59H_ 3.86 viral protein/immune system Chain: H: rabbit antibody 13b fragment antigen binding heavy chain;
c6lr5B_ 3.49 oxidoreductase Chain: B: hexachlorobenzene oxidative dehalogenase;
c6nqyB_ 2.50 protein fibril Chain: B: flagellar coiling protein a;
c6v0kA_ 2.41 transferase Chain: A: terpene synthase;
c6rirC_ 1.77 signaling protein Chain: C: rilp-like protein 2;
c6xt9A_ 3.80 protein transport Chain: A: bardet-biedl syndrome 1 protein;
c6t9iF_ 3.90 gene regulation Chain: F: transcription initiation factor tfiid subunit 9;
c6tb4A_ 3.80 transcription Chain: A: transcriptional coactivator hfi1/ada1;
c6syjB_ 0.81 structural protein Chain: B: prom2 containing collagen model peptide.;
c6l3fA_ 1.98 transferase Chain: A: utp:rna uridylyltransferase 1;
c6v40D_ 2.10 protein transport Chain: D: pg_binding_3 domain-containing protein;
c6t9kQ_ 3.30 gene regulation Chain: Q: saga-associated factor 73;
c6t9iE_ 3.90 gene regulation Chain: E: transcription initiation factor tfiid subunit 6;
c6xt9J_ 3.80 protein transport Chain: J: bbsome-interacting protein 1;
c6jc4C_ 2.30 metal binding protein Chain: C: urease accessory protein uref;
c6jovC_ 1.94 metal binding protein Chain: C: fe-superoxide dismutase;
c6uujJ_ 3.00 protein transport Chain: J: pe family immunomodulator pe5;
c6t9kC_ 3.30 gene regulation Chain: C: protein spt3;
c6jbnB_ 2.30 oxygen binding Chain: B: peroxidase efeb;
c6vbu2_ 3.10 protein transport Chain: 2: bardet-biedl syndrome 2 protein homolog;
c6vbu9_ 3.10 protein transport Chain: 9: bardet-biedl syndrome 9;
c6t9kI_ 3.30 gene regulation Chain: I: transcription initiation factor tfiid subunit 12;
c6nr7A_ 3.00 cell adhesion Chain: A: vinculin;
c6ifcF_ 1.99 toxin/antitoxin Chain: F: antitoxin vapb;
c6s32D_ 1.35 flavoprotein Chain: D: nadh:flavin oxidoreductase/nadh oxidase;
c6uexA_ 1.90 transferase Chain: A: regulatory protein msrr;
c6uf6A_ 2.20 transferase Chain: A: polyisoprenyl-teichoic acid--peptidoglycan teichoic acid
c6t9iU_ 3.90 gene regulation Chain: U: unassigned sequence;
c6rw3D_ 3.65 membrane protein Chain: D: hexose transporter 1;
c6vbu1_ 3.10 protein transport Chain: 1: bbs1 domain-containing protein;
c6l9sA_ 2.00 metal binding protein Chain: A: blue (type 1) copper domain protein;
c6vbv5_ 3.50 protein transport Chain: 5: bardet-biedl syndrome 5 protein homolog;
c6tb4C_ 3.80 transcription Chain: C: saga-associated factor 73 (sgf73);
c6t9jI_ 3.40 gene regulation Chain: I: transcription initiation factor tfiid subunit 12;
c6p74A_ 2.20 hydrolase Chain: A: putative atp-dependent endonuclease of the old family;
c6udkM_ 3.90 viral protein/immune system Chain: M: 1-55 fab heavy chain;
c6nqzA_ 2.58 protein fibril Chain: A: flagellar coiling protein b;
c6qbiA_ UNK membrane protein Chain: A: surface protein, mlp lipoprotein family;
c6tv1A_ 1.70 protein binding Chain: A: essc protein;
c6nq3G_ 2.89 transcription Chain: G: phd finger protein 19;
c6xw2A_ 1.75 fluorescent protein Chain: A: genetically encoded calcium indicator ncamp7 based on
c6t9jB_ 3.40 gene regulation Chain: B: transcription factor spt20;
c6vbv8_ 3.50 protein transport Chain: 8: tetratricopeptide repeat domain 8;
c6t9kD_ 3.30 gene regulation Chain: D: transcription initiation factor tfiid subunit 5;
c6vbwA_ 3.20 immune system Chain: A: cas8;
c6t9kK_ 3.30 gene regulation Chain: K: transcriptional activator spt7;
c6uujE_ 3.00 protein transport Chain: E: ppe family protein ppe4;
c6vbu7_ 3.10 protein transport Chain: 7: bardet-biedl syndrome 7 protein homolog;
c6tb4L_ 3.80 transcription Chain: L: transcription-associated protein;
c6tb4F_ 3.80 transcription Chain: F: spt20;
c6syjA_ 0.81 structural protein Chain: A: prom2 containing collagen model peptide.;
c6s6qB_ 2.95 signaling protein Chain: B: lrr receptor-like serine/threonine-protein kinase gso1;
c6t2tA_ 1.30 transferase Chain: A: glutathione s-transferase e14;
c6t9kB_ 3.30 gene regulation Chain: B: transcription factor spt20;
c6nasN_ 2.90 structural protein/transferase Chain: N: n-alpha-acetyltransferase 80;
c6tb4H_ 3.80 transcription Chain: H: subunit (60 kda) of tfiid and saga complexes;
c6tb4D_ 3.80 transcription Chain: D: subunit of the saga and saga-like transcriptional
c6kl7B_ 2.79 signaling protein Chain: B: beta-arrestin-1;
c6tb4J_ 3.80 transcription Chain: J: transcription initiation factor tfiid subunit 10;
c6tb4E_ 3.80 transcription Chain: E: subunit of the saga transcriptional regulatory complex,
c6t9iI_ 3.90 gene regulation Chain: I: transcription initiation factor tfiid subunit 12;
c6jbcA_ 2.70 transferase Chain: A: pantoate kinase;
c6rsnA_ 1.70 signaling protein Chain: A: upstream of flc-like protein (duf966);
c6tb4K_ 3.80 transcription Chain: K: subunit (61/68 kda) of tfiid and saga complexes;
c6t9iH_ 3.90 gene regulation Chain: H: transcriptional coactivator hfi1/ada1;
c6t9iB_ 3.90 gene regulation Chain: B: transcription factor spt20;
c6t9kU_ 3.30 gene regulation Chain: U: unassigned sequence;
c6ifcB_ 1.99 toxin/antitoxin Chain: B: antitoxin vapb;
c6s6qC_ 2.95 signaling protein Chain: C: protein casparian strip integrity factor 2;


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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