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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6xt9A_

Fold library idPDB HeaderMoleculeTitle
c6xt9A_3.80PDB header: protein transportChain: A: PDB Molecule: bardet-biedl syndrome 1 protein;


Added to library: Sat Feb 1 08:22:09 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SKWLDAHYDPMANIHTFSACLALADLHGDGEYKLVVGDLGPGGQQPRLKVLKGPLVMTESPLPALPAAAA
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TT





GGG
TTSSS



TTS


TT
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence TFLMEQHEPRTPALALASGPCVYVYKNLRPYFKFSLPQLPPNPLEQDLWNQAKEDRIDPLTLKEMLESIR
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TT




TT

SSS









TTTTTT


 .........150.........160.........170.........180.........190.........200.........210
Sequence ETAEEPLSIQSLRFLQLELSEMEAFVNQHKSNSIKRQTVITTMTTLKKNLADEDAVSCLVLGTENKELLV
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Known secondary structure (DSSP) TTS



TTTTTTTTS


TT







SSSSSSSS
TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LDPEAFTILAKMSLPSVPVFLEVSGQFDVEFRLAAACRNGNIYILRRDSKHPKYCIELSAQPVGLIRVHK
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Known secondary structure (DSSP)

TTT
S


SS




SS


TTS
SS

S


SS

SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence VLVVGSTQDSLHGFTHKGKKLWTVQMPAAILTMNLLEQHSRGLQAVMAGLANGEVRIYRDKALLNVIHTP
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Known secondary structure (DSSP)
TTS

B
SS

B



SS

TTT

SSS
SSS
B





S
 .........360.........370.........380.........390.........400.........410.........420
Sequence DAVTSLCFGRYGREDNTLIMTTRGGGLIIKILKRTAVFVEGGSEVGPPPAQAMKLNVPRKTRLYVDQTLR
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Known secondary structure (DSSP) S
TTSSS

SS










S



S
S






T
 .........430.........440.........450.........460.........470.........480.........490
Sequence EREAGTAMHRAFQTDLYLLRLRAARAYLQALESSLSPLSTTAREPLKLHAVVQGLGPTFKLTLHLQNTST
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Known secondary structure (DSSP) STTT
SS

SSS



TT

SS


S
 .........500.........510.........520.........530.........540.........550.........560
Sequence TRPVLGLLVCFLYNEALYSLPRAFFKVPLLVPGLNYPLETFVESLSNKGISDIIKVLVLREGQSAPLLSA
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Known secondary structure (DSSP) S











S


S






SS




SS




SSS

S
TT
 .......
Sequence HVNMPGS
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Known secondary structure (DSSP)






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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