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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6nr7A_

Fold library idPDB HeaderMoleculeTitle
c6nr7A_3.00PDB header: cell adhesionChain: A: PDB Molecule: vinculin;


Added to library: Sat Feb 1 08:43:02 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MGSSHHHHHHSSGLVPRGSHMPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVSAVQAA
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Known secondary structure (DSSP)



SSSTTT




SS
S





BTTTTTSS






TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence VSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVRAAQMLQADPYSVPARDYLIDGSRGILSGTS
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Known secondary structure (DSSP) TTS


SS
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVM
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Known secondary structure (DSSP) TTTT


TTBS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LVNSMNTVKELLPVLISAMKIFVTTKNTKSQGIEEALKNRNFTVEKMSAEINEIIRVLQLTSWDEDAWAS
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Known secondary structure (DSSP) TS

SSS
SS
T

S

SST
 .........290.........300.........310.........320.........330.........340.........350
Sequence KDTEAMKRALALIDSKMNQAKGWLRDPNAPPGDAGEQAIRQILDEAGKAGELCAGKERREILGTCKTLGQ
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Known secondary structure (DSSP) SGGGT

S


SSSSST

T
 .........360.........370.........380.........390.........400.........410.........420
Sequence MTDQLADLRARGQGATPMAMQKAQQVSQGLDLLTAKVENAARKLEAMTNSKQAIAKKIDAAQNWLADPNG
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Known secondary structure (DSSP) TT
TT
SS

 .........430.........440.........450.........460.........470.........480.........490
Sequence GSEGEEHIRGIMSEARKVAELCEEPKERDDILRSLGEISALTAKLSDLRRHGKGDSPEARALAKQIATSL
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Known secondary structure (DSSP)
STTTS


TTTTSSTTTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence QNLQSKTNRAVANTRPVKAAVHLEGKIEQAQRWIDNPTVDDRGVGQAAIRGLVAEGRRLANVMMGPYRQD
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Known secondary structure (DSSP) TTS
S


SSTTSS
S
TTTTTTTS
 .........570.........580.........590.........600.........610.........620.........630
Sequence LLAKCDRVDQLAAQLADLAARGEGESPQARAIAAQLQDSLKDLKARMQEAMTQEVSDVFSDTTTPIKLLA
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Known secondary structure (DSSP) S


TTTS
SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence VAATAPSDTPNREEVFEERAANFENHAARLGATAEKAAAVGTANKTTVEGIQATVKSARELTPQVVSAAR
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Known secondary structure (DSSP)
SS

TTSS

 .........710.........720.........730.........740.........750.........760.........770
Sequence ILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEAIDTKSLLDASEEAIKKDLDKCKVAMANMQPQMLV
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Known secondary structure (DSSP)
TT
STTS
TTT
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence AGATSIARRANRILLVAKREVENSEDPKFREAVKAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLDS
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Known secondary structure (DSSP) SSSB

STTGGGSTTTTTTSS


TTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence GYRILGAVAKVREAFQPQEPDFPPPPPDLEHLHLTDELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKA
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Known secondary structure (DSSP) S
SS

S




















SSS



S



S

S









S
 .........920.........930.........940.........950.........960.........970.........980
Sequence GEAINQPMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGNKRALIQCAKDIAKASDE
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Known secondary structure (DSSP) S



TB

SS
TTSS

S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNL
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Known secondary structure (DSSP) TTB
BSTTSS

TT
 .........1060.........1070.........1080......
Sequence MQSVKETVREAEAASIKIRTDAGFTLRWVRKTPWYQ
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Known secondary structure (DSSP) SB
TT







B

SS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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