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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6tb4L_

Fold library idPDB HeaderMoleculeTitle
c6tb4L_3.80PDB header: transcriptionChain: L: PDB Molecule: transcription-associated protein;


Added to library: Sat Feb 1 09:01:38 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VVQLDDFATRLYQSKHSVLSEICDSLETYEYFLKSLIPLFIDVLKEVPVSFVANSPENKLRNITLEILHR
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Known secondary structure (DSSP)
T



S



SS
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence IDALQAYSNEIVDTLMDLLKVENELNGILCMKAITTLHKTQEKVHPFIDIVIEIYSNIPQVVEEQFSKQL
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Known secondary structure (DSSP)

TTSS
SSS

S

TTT

 .........150.........160.........170.........180.........190.........200.........210
Sequence AQAMFSFKTLAESPITMVSLYSSYKELAASSLGNNRANYGEFIIGQVKAASFLAYLFIRRQAQTFLEPYQ
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Known secondary structure (DSSP) SS

SSTS




SSS





 .........220.........230.........240.........250.........260.........270.........280
Sequence QAIPDIIIRLLQDCPSELSAARKELLHATRHILSTDFRKMFIPKIDLLFDLRVLIGEGFTAYETLRPLAY
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Known secondary structure (DSSP) S
TTTTTTSS
SS
TTSTTTTTTTTT
S
SSSS

STTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence STVADFIHNVRDHLTPAQLWKSVSIYCKNLQDDSLALTVQIMSAKLLLNLIEKIMRSESKTESRQLLMVI
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Known secondary structure (DSSP)

S

TTTTTT
TTS
STTTS
SSST
 .........360.........370.........380.........390.........400.........410.........420
Sequence IDAYTKRFKMLNSRYNGIMMSLQEYLPIQVSVPPEIDLLKDSRYLFKTLMTFLKTIMIGLKNSNPPNWNE
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Known secondary structure (DSSP) S




TT
SS

S





STTS




BTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence TARGFSNEDINILKSLFRECILALRFFTKEEKDLMEIFATMFIHIDPASFNEIVREELPFMYKQMLDFAS
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Known secondary structure (DSSP) TB



TTTGGGG

SS
TTTTTTT
GG
 .........500.........510.........520.........530.........540.........550.........560
Sequence LLHIPQFFLASVITSSSFSGILITFLKSKLVDLGEVNIIKSNILIRLFKLCFMSVSLFPAANESVILPHL
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Known secondary structure (DSSP) GGTSSSTTTTGGGSSS
TT
SSTTSTTTTTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence NELILKSLKLSTTAKEPLVYFYLIRTLFRSIGGGRFENLYKEIMPLLQVLLESLSKLIHEARRPQERDIY
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Known secondary structure (DSSP) TS
SSTT

S
S

GGGTTTTTSSSS


SSSS
T
 .........640.........650.........660.........670.........680.........690.........700
Sequence VELCLTVPVRLSVLVPHLSYLMKPLVYALNGSQESVSQGLRTLELCVDNLTAEYFDPIIEPVIDDVMEAL
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Known secondary structure (DSSP)


S
TTTTSTTGGGGSTTS
SSSSS
TTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence SKHLKPLPYYHQHSHTTLRILGKLGGRNRTFIKPVDNLKTDSELFQNVEAMFKIHGLPNEVPLSITPGLS
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Known secondary structure (DSSP) TTS


TTS
TTS
SSSTTS








S
STT




BSSS
S

S
SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence AAFSLLTDPRPRIHYRINSFKYISGIFQLFLGATQLPDDYANRLKEDSQMELLVKLLESIFYAVSLQEVR
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Known secondary structure (DSSP) T
SSS
TTS


SS


GGGGGGSTTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence EESKALIRGTCNHFILLYFNKMVINCIFDAIIYALSSDNSAVRSMGLESVQLIYDSCVELFGNIDCALKF
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Known secondary structure (DSSP) TTTTTT


T
SST

TTTTTTS
 .........920.........930.........940.........950.........960.........970.........980
Sequence APLNVMCSKFIHCCFEEPYHKKLAGCIGLEMMLNSLDIPMKYFNARQLEIIRALFYVLRDTAPELPCEVT
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Known secondary structure (DSSP) STTS
SSTTSSS
S
TTTSS
TTS
T
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence NTAKRLILNSLKEWNKELTRNDVFSSVFQNLVSSLIVDLPNANEIVRATAQEALRTLSETTQVPIATMIS
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Known secondary structure (DSSP) TTS
S



TTS
SSTTSSTTSSSSSTTTT

SG
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence PCKHILLAPIFGKPLRALPFQMQIGNIDAITFCMGLENSFLEYNEELNRLVQEALALKTSEQLVRLRVVC
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Known secondary structure (DSSP) GGS
SSSS
TTTTSSS


S



 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence IQLLSLAITKPEFAAAQQRSNIRVKILVVFFKSLCGRSIEIIRAAHGGLKAVIDPKELLQNGLRPMLMNL
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Known secondary structure (DSSP) SSTTTTTSS
TTT
SSSTTS


T
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence SDHKKLTVASLEALSGLLKLKVGIGSKLLDHLLAWAQPRTLQQLGSQDLENNSTVQIIVAILDVFHLLPP
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Known secondary structure (DSSP) SS
S


TT



TSGGGTTTTTTS
SSS
SGGGGG

S
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence TAHKFMNDLMNALLYLENNLHRCQYSPFREPLAKFLDRFPDESFEYFFNEFSKREITTRFVYFVGLDSCS
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Known secondary structure (DSSP) S

S
STTT

S

GGGS
TTT
S
STT
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence SLRAKVLESLPRVRGLLHQEKCVRFSNLVDLCESLAASDKEWIKDKEELLGELLDAGSVCLTLKRSSNVV
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Known secondary structure (DSSP) T
GGGG





TT
TTSTTT

SS
TTSS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence SPLYFQVDQGFETLQLLYIEYFKSQPLGHEKVFNFIDKISKEGLPFVLEFDDFIFNEVVIPTVQQTLDTI
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Known secondary structure (DSSP)



TTTGGGS

SSSTTTTTGGGTTSSSS

TTTSTTTGGGT


TT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence IRMTPQVSSLDARVYLYKRIFLPICIYESEMHGDLSRAWLKSFDSDVWKATGPLVDDYTSTLEDRYRLEL
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Known secondary structure (DSSP) TT
TTS
TTTTGGGGGTTSSSS



SSS

TTTTTS


STT
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence MQLTALLIKGAPTALTDMRKDIIKFSWNYIKLDDNTSKQAAYVVTAYFISRFLTTRIFVALLRCHQIDTR
Predicted secondary structure
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Known secondary structure (DSSP)
TTS
STSGGGGS
SSSSTTTTT


TTSSS


TT
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence YLVKQALELLAPVLSERWLKWPRRVLSETQVANIYQLIVKFPDLFYPARDHFIPNIITAMGKLTVLENQQ
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Known secondary structure (DSSP) TTTT

TTT


TTTTTS
TTS
TT
TT

T
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence LAIDLAELILKWETKLPFAQREACVTFLIRYICISELGKRALNILYELLGPVKLQFFERFLLGYCLNALE
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Known secondary structure (DSSP)









 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence VLAVALKTWIIENVSYLQKLLEKCLQDIQEILQKVLGIILEAINKEDEPEEVTNFISLIVNIIGVAAGVS
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Known secondary structure (DSSP)

TT






 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence LCWTLSLYRPNALDSLLPSIMRTFNKLCRDHIAEFEAKVTTNLLEKILNLCAADQRRVFLSLLAQLIDRS
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Known secondary structure (DSSP) TTS
S






S
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence VDKDMLLKVINIVTEWIFTTKEKAGILGKMMIFDLELSKKFNQVIVDIFESKHTELTARMETAFLFGTRL
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Known secondary structure (DSSP)




GGG




S

TTTTTTSSS
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence SDVSIRKKLMSILSDSLELDIDKRLFYIIKDQNWEYLSDYPWLNQALQLLYGSFHLDSPIRLSIIDFVAK
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Known secondary structure (DSSP)

S
SSSSTTTTSS




SS

TTTB


S

B


 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence HNEFLDSVRSLTAGDILNPLIDISYQSAETIHNAWVVVFPVAYSAIESRYELEFTRALVKLLFKDYHIRQ
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Known secondary structure (DSSP) TT


STT
TTS
TT


STTTS
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence QDARPNVIKSLLDGVGKCPGLHLPPHLVKYLGSNYNAWYGAIKLLEELSEGQGIDNQKISDANQDALLEV
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Known secondary structure (DSSP)

STT
TTSTT



TS
STTSSS

S
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence YMSLQEDDMFYGTWRRRAKYFETNAALSYEQIGIWDKALQLYEAAQIKARSGVFPFGESEYSLWEDHWIY
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Known secondary structure (DSSP) TTTT

TTTTT


STT

TTSSS
S



STTSTT
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence CAEKLQHWEILTELAKHEGFTDLLLECGWRWIADREPLEQSVKTVMDIPTPRRQIFQTFLALQGFSQQKD
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Known secondary structure (DSSP) TT
TTS
S


SSSSS

TTTTTSS
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence TLQDVSRLCDEGIQLTLRKWNALPQRVTRAHIGLLHTFQQYVELMEASQVYSSLVQELKRVLQAWRERLP
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Known secondary structure (DSSP)
STS
SS

TTSTTTTTTS





 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence NVWDDINIWNDLVTWRQHVFGVINRVYMAYRGYHEMAWVINRFAHVARKHEMPEVCINQQKAEFFTLKGM
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Known secondary structure (DSSP)
TTS









S
TTTTTT


 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence FLAKLNAKDEANQAFATAVQIPKAWAEWGFFNDRRFKENPEEIFHAKNAISCYLQAAGLGKTRKLLCRIL
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Known secondary structure (DSSP) TT
T

TS
TT
STTTTTTTSS




 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence WLISLDDAAGSLAKTFEDHPVWYWITFVPQLLTSLSHKEAKIVRHILIQIAKSYPQSLHFQLRTTKQPWQ
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Known secondary structure (DSSP) TTTT
SS
TT



GGGTTSTTSS
TT
STTTTT



SS
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence DVEEIMGILKTAYPLLALSLESLVDQLNQRFGKADLERVSLHLSLFHHQKFEDIEIPGQYLLHKDNNNHF
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Known secondary structure (DSSP) TSS




TTTTS

S

B
SSSSSS

TT
SS
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence IKIERFLPTLDLVRGSNGCYKRMTIRGNDGSLHPFAVQFPAARHCRREERIFQLFRIFDDALSRKVQSRR
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Known secondary structure (DSSP)
B


S


SSSB



TTS

S


TTTTSSTTTT
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence RNISLTLPIAVPLSPHIRILNDDKRYTTLMGIYEEFCRRKPSTLLKDYYTEKFSNYENYWLFRKQFTAQY
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Known secondary structure (DSSP) TT







SSS


SS

B



SS

S
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence ASFIFMTYIMCINSRQPQKIHINEGSGNIWTSEMLPTFYNTESVPFRLTPNIQKFIGEAGLEGILSVYIL
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Known secondary structure (DSSP) TTTB



GGG
SSS

S


B




S

SS



SSSTTTT
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence VIANSLSDSEFDMEQYLSLFVRDEVISWFAQQHRASAQTNQLREIVRVNVELLTKRVLQLNHIPNSQNVA
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Known secondary structure (DSSP) SSSSSTTTTTTSTTTTTTSS



STTGGGS

SSSSS
S
 .........2950.........2960........
Sequence TQFVLNLISQAVNPRNLAYTDSAWMAYL
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Known secondary structure (DSSP)
SST
SS
SSS
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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