PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6tb4D_

Fold library id	PDB Header	Molecule	Title
c6tb4D_	3.80	PDB header: transcription	Chain: D: PDB Molecule: subunit of the saga and saga-like transcriptional

Links to external resources
Added to library: Sat Feb 1 08:29:18 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M E I Q Q M M F V S G E T N D P P V E T T S L I E D I V R S Q V V E I V L H S S Q T A L S R G T K S I V P E D V I F L I R H D K A K V N R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T
S
S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R T Y L S S L K R L K T N D E R T K N M T K E E Y V H W S E C R Q A S F T F R K A K R F R E W C G L S H L A E S R P S D D V I D I L G F L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T
S G G G S T S
S S S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . .

Sequence F E M V C S I T E E A L I V K M L E E R K H L F D G P D K D V R P I T S G H V L E A W R R L Q K R N V E K K A I R N F Q G G K L R S R V Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
S
S S S S S S S
S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	E	I	Q	Q	M	M	F	V	S	G	E	T	N	D	P	P	V	E	T	T	S	L	I	E	D	I	V	R	S	Q	V	V	E	I	V	L	H	S	S	Q	T	A	L	S	R	G	T	K	S	I	V	P	E	D	V	I	F	L	I	R	H	D	K	A	K	V	N	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T																																			T			S												S	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	T	Y	L	S	S	L	K	R	L	K	T	N	D	E	R	T	K	N	M	T	K	E	E	Y	V	H	W	S	E	C	R	Q	A	S	F	T	F	R	K	A	K	R	F	R	E	W	C	G	L	S	H	L	A	E	S	R	P	S	D	D	V	I	D	I	L	G	F	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					S	S	S										T		S	G	G	G	S	T								S			S	S	S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Sequence	F	E	M	V	C	S	I	T	E	E	A	L	I	V	K	M	L	E	E	R	K	H	L	F	D	G	P	D	K	D	V	R	P	I	T	S	G	H	V	L	E	A	W	R	R	L	Q	K	R	N	V	E	K	K	A	I	R	N	F	Q	G	G	K	L	R	S	R	V	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								S		S		S																					S	S	S	S	S	S	S				S	S