Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6t9kD_

Fold library idPDB HeaderMoleculeTitle
c6t9kD_3.30PDB header: gene regulationChain: D: PDB Molecule: transcription initiation factor tfiid subunit 5;


Added to library: Sat Feb 1 10:29:51 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SASDLNRIVLEYLNKKGYHRTEAMLRAESGRTLTPQNKQSPANTKTGKFPEQSSIPPNPGKTAKPISNPT
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP)
TT

S




SSTT

TTT






S





S


SSSS

 .........80.........90.........100.........110.........120.........130.........140
Sequence PENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNPVYARRFFDRFSPDFKDFHGSEINR
Predicted secondary structure

SS confidence





































































Known secondary structure (DSSP)


T

STTTTT
S
TTSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLDPNIDLKLEIQ
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) TTS

STTSS


TT
TTTT


 .........220.........230.........240.........250.........260.........270.........280
Sequence KVKESRDAIKLDNLQLALPSVCMYTFQNTNKDMSCLDFSDDCRIAAAGFQDSYIKIWSLDGSSLNNPNIA
Predicted secondary structure












































SS confidence





































































Known secondary structure (DSSP) SS


S






S

S

SSS
TTS
TT



S

TTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence LNNNDKDEDPTCKTLVGHSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFS
Predicted secondary structure













































SS confidence





































































Known secondary structure (DSSP)

S

SS


S


SS

TTSSSSS
TTTT


SS


 .........360.........370.........380.........390.........400.........410.........420
Sequence PLGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRL
Predicted secondary structure






















































SS confidence





































































Known secondary structure (DSSP) SSSS

TTSTT

SS

TTSSTTTTTT

 .........430.........440.........450.........460.........470.........480.........490
Sequence FLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYSKEGNVLISGGADH
Predicted secondary structure














































SS confidence





































































Known secondary structure (DSSP)

SS

SSSSTTS
TTT
S

S
SS





SSS

SSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence TVRVWDLKKATTEPSAEPDEGDVTASINQDIKEYGRRRTVIPTSDLVASFYTKKTPVFKVKFSRSNLALA
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP) SSSSSS









SSTTTSTT

TT
STTS



TT
SS




TTS
 ......
Sequence GGAFRP
Predicted secondary structure


SS confidence





Known secondary structure (DSSP)



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D