Email l.a.kelley@imperial.ac.uk Description P0A0G6 Date Tue Jul 17 17:05:06 BST 2012 Unique Job ID af71a9c07d345414

Summary

Top model
Image coloured by rainbow N → C terminus Close Jmol	Model (left) based on template d2aifa1 Top template information Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins Confidence and coverage Confidence: 99.8% Coverage: 93% 78 residues ( 93% of your sequence) have been modelled with 99.8% confidence by the single highest scoring template. 3D viewing Interactive 3D view in Jmol

Sequence analysis

Secondary structure and disorder prediction

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2aif chain A domain 1 Region: 7 - 84 Aligned: 78 Modelled: 78 Confidence: 99.8% Identity: 26% Fold: Bacillus chorismate mutase-like Superfamily: L30e-like Family: L30e/L7ae ribosomal proteins Phyre2 PDB 1w41 chain A domain 1 Region: 1 - 83 Aligned: 83 Modelled: 83 Confidence: 99.8% Identity: 17% Fold: Bacillus chorismate mutase-like Superfamily: L30e-like Family: L30e/L7ae ribosomal proteins Phyre2 PDB 3o85 chain A Region: 6 - 84 Aligned: 79 Modelled: 79 Confidence: 99.8% Identity: 24% PDB header:ribosomal protein Chain: A: PDB Molecule:ribosomal protein l7ae; PDBTitle: giardia lamblia 15.5kd rna binding protein Phyre2 PDB 1t0k chain B Region: 1 - 83 Aligned: 83 Modelled: 83 Confidence: 99.8% Identity: 19% Fold: Bacillus chorismate mutase-like Superfamily: L30e-like Family: L30e/L7ae ribosomal proteins Phyre2 PDB 2bo1 chain A domain 1 Region: 1 - 83 Aligned: 83 Modelled: 83 Confidence: 99.8% Identity: 19% Fold: Bacillus chorismate mutase-like Superfamily: L30e-like Family: L30e/L7ae ribosomal proteins Phyre2 PDB 3cpq chain B Region: 7 - 83 Aligned: 77 Modelled: 77 Confidence: 99.8% Identity: 18% PDB header:ribosomal protein Chain: B: PDB Molecule:50s ribosomal protein l30e; PDBTitle: crystal structure of l30e a ribosomal protein from2 methanocaldococcus jannaschii dsm2661 (mj1044) Phyre2 PDB 2lbw chain A Region: 7 - 84 Aligned: 78 Modelled: 78 Confidence: 99.8% Identity: 22% PDB header:rna binding protein Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 2; PDBTitle: solution structure of the s. cerevisiae h/aca rnp protein nhp2p-s82w2 mutant Phyre2 PDB 4a1d chain G Region: 7 - 83 Aligned: 77 Modelled: 77 Confidence: 99.8% Identity: 17% PDB header:ribosome Chain: G: PDB Molecule:rpl30; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4. Phyre2 PDB 1xbi chain A domain 1 Region: 7 - 83 Aligned: 77 Modelled: 77 Confidence: 99.8% Identity: 34% Fold: Bacillus chorismate mutase-like Superfamily: L30e-like Family: L30e/L7ae ribosomal proteins Phyre2 PDB 2zkr chain 6 Region: 6 - 83 Aligned: 78 Modelled: 78 Confidence: 99.8% Identity: 18% PDB header:ribosomal protein/rna Chain: 6: PDB Molecule:60s ribosomal protein l30e; PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map Phyre2 PDB 2ozb chain A domain 1 Region: 7 - 84 Aligned: 78 Modelled: 78 Confidence: 99.8% Identity: 23% Fold: Bacillus chorismate mutase-like Superfamily: L30e-like Family: L30e/L7ae ribosomal proteins Phyre2 PDB 2czw chain A domain 1 Region: 7 - 83 Aligned: 77 Modelled: 77 Confidence: 99.8% Identity: 34% Fold: Bacillus chorismate mutase-like Superfamily: L30e-like Family: L30e/L7ae ribosomal proteins Phyre2 PDB 1rlg chain A Region: 7 - 83 Aligned: 77 Modelled: 77 Confidence: 99.8% Identity: 31% Fold: Bacillus chorismate mutase-like Superfamily: L30e-like Family: L30e/L7ae ribosomal proteins Phyre2 PDB 2fc3 chain A domain 1 Region: 7 - 83 Aligned: 77 Modelled: 77 Confidence: 99.8% Identity: 31% Fold: Bacillus chorismate mutase-like Superfamily: L30e-like Family: L30e/L7ae ribosomal proteins Phyre2 PDB 3v7e chain B Region: 2 - 80 Aligned: 77 Modelled: 79 Confidence: 99.8% Identity: 35% PDB header:ribosomal protein/rna Chain: B: PDB Molecule:ribosome-associated protein l7ae-like; PDBTitle: crystal structure of ybxf bound to the sam-i riboswitch aptamer Phyre2 PDB 1vqo chain F domain 1 Region: 7 - 83 Aligned: 77 Modelled: 77 Confidence: 99.8% Identity: 21% Fold: Bacillus chorismate mutase-like Superfamily: L30e-like Family: L30e/L7ae ribosomal proteins Phyre2 PDB 1jj2 chain F Region: 7 - 83 Aligned: 77 Modelled: 77 Confidence: 99.8% Identity: 21% Fold: Bacillus chorismate mutase-like Superfamily: L30e-like Family: L30e/L7ae ribosomal proteins Phyre2 PDB 2xzn chain U Region: 7 - 84 Aligned: 78 Modelled: 78 Confidence: 99.8% Identity: 21% PDB header:ribosome Chain: U: PDB Molecule:ribosomal protein l7ae containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 Phyre2 PDB 3v7q chain B Region: 8 - 83 Aligned: 75 Modelled: 76 Confidence: 99.8% Identity: 19% PDB header:rna binding protein Chain: B: PDB Molecule:probable ribosomal protein ylxq; PDBTitle: crystal structure of b. subtilis ylxq at 1.55 a resolution Phyre2 PDB 2ale chain A domain 1 Region: 7 - 84 Aligned: 78 Modelled: 78 Confidence: 99.8% Identity: 23% Fold: Bacillus chorismate mutase-like Superfamily: L30e-like Family: L30e/L7ae ribosomal proteins Phyre2 1 d2aifa1 2 d1w41a1 3 c3o85A_ 4 d1t0kb_ 5 d2bo1a1 6 c3cpqB_ 7 c2lbwA_ 8 c4a1dG_ 9 d1xbia1 10 c2zkr6_ 11 d2ozba1 12 d2czwa1 13 d1rlga_ 14 d2fc3a1 15 c3v7eB_ 16 d1vqof1 17 d1jj2f_ 18 c2xznU_ 19 c3v7qB_ 20 d2alea1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0