PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4a1eF_

Fold library id	PDB Header	Molecule	Title
c4a1eF_	PDB header: ribosome	Chain: F: PDB Molecule: rpl7a;	PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1

Links to external resources
Added to library: Sat Dec 3 17:36:02 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N P L F Q A K P R S F R V G G D I Q P K R D L T R F V R W P R Y I T L Q R Q K R V L L Q R L K V P P Q I H Q F T K T L D K N Q S S N L F K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S S S S
G G G
S B
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L A S Y A P E K P A E K K Q R L V A Q A E A K K D G K Q V E T K K P I V L K Y G L N H I T T L I E N K Q A K L V V I A H D V D P I E L V I F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T S
S S
S S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L P Q L C R K N D V P F A F V K G K A A L G K L V N K K T A T A V A L T E V R N E D K A K L Q Q F S E L F K T N Y N A N D E L R K T W G G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T S S
S
T T T
B

. . . . . . . . . 220 . . . . . . . . . 230 .

Sequence I L G Q K S Q H K V E A L A K A V Q E E Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	P	L	F	Q	A	K	P	R	S	F	R	V	G	G	D	I	Q	P	K	R	D	L	T	R	F	V	R	W	P	R	Y	I	T	L	Q	R	Q	K	R	V	L	L	Q	R	L	K	V	P	P	Q	I	H	Q	F	T	K	T	L	D	K	N	Q	S	S	N	L	F	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T								S	S	S	S	S								G	G	G																				S	B							G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	A	S	Y	A	P	E	K	P	A	E	K	K	Q	R	L	V	A	Q	A	E	A	K	K	D	G	K	Q	V	E	T	K	K	P	I	V	L	K	Y	G	L	N	H	I	T	T	L	I	E	N	K	Q	A	K	L	V	V	I	A	H	D	V	D	P	I	E	L	V	I	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T																					T	T																								T	S			S						S			S	S	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	P	Q	L	C	R	K	N	D	V	P	F	A	F	V	K	G	K	A	A	L	G	K	L	V	N	K	K	T	A	T	A	V	A	L	T	E	V	R	N	E	D	K	A	K	L	Q	Q	F	S	E	L	F	K	T	N	Y	N	A	N	D	E	L	R	K	T	W	G	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T							S										T	S	S			S																										T	T	T										B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Sequence	I	L	G	Q	K	S	Q	H	K	V	E	A	L	A	K	A	V	Q	E	E	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)