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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3mcaB_

Fold library idPDB HeaderMoleculeTitle
c3mcaB_PDB header: translation regulation/hydrolaseChain: B: PDB Molecule: protein dom34;PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay


Added to library: Tue Oct 19 11:51:14 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence IEKNSGWITMEPEDMWHLYNILQVGDQLKASTVRRILVENMDFDTKAAQLHIKRTTEYHPMGSYHTLDLE
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Known secondary structure (DSSP)
B


B

B

T

TT
B









TTSS


B
S




S






 .........80.........90.........100.........110.........120.........130.........140
Sequence LHRNFTLYNEWDAFALDRVDAACNPSAEIGAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRGDSSAY
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Known secondary structure (DSSP) SSS

B





TTSSS



TT
SS






BTTB
 .........150.........160.........170.........180.........190.........200.........210
Sequence QKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKFVILHSSTG
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Known secondary structure (DSSP)

TTT
SSSSTT
GGG
S
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence HIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSLF
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Known secondary structure (DSSP) SGGGGGTSSS
TTS
TTSSTT
BSS
TT
 .........290.........300.........310.........320.........330.........340.
Sequence RSSDIATRKKWVSLVEGVKEINCPVYIFSSLHESGKQLDLLSGIAAILTYPVDEEDISEDE
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Known secondary structure (DSSP)

S
TT


TTSTTSBSS











Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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