Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA2A699
DateWed Jul 10 14:20:28 BST 2013
Unique Job ID2594d5ee141170c0
SequenceMPPPSGPGVL ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.178 Y:37.139 Z:37.325
Model (left) based on template c1h8lA_
Top template information
PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa
Confidence and coverage
Confidence: 97.6% Coverage: 7%
60 residues ( 7% of your sequence) have been modelled with 97.6% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
116 residues ( 14%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
Warning: 69% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MPPPSGPGVLARLLPLLGLLLGGASRAPGKSPPEPPSPQEILIKVQVYVSGELVPLARAS
Secondary structure 
SS confidence 
Disorder  ???????
???????????????????
?????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  VDVFGNRTLLAAGTTDSEGVATLPLSYRLGTWVLVTAARPGFLTNSVPWRVDKLPLYASV
Secondary structure 
SS confidence 
Disorder 
?
?
??
?????????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  SLYLLPERPATLILYEDLVHILLGSPGARSQPWVQFQRRAARLPVSSTYSQLWASLTPAS
Secondary structure 
SS confidence 
Disorder  ?????????
??????????????
?
???
?
?
??
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  TQQEMRAFPAFLGTEASSSGNGSWLELIPLAAVSVHLLTGNGTEVPLSGPIHLSLPVPSE
Secondary structure 
SS confidence 
Disorder  ??
??
????????????
?
?
?
???
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  PRALAVGTSIPAWRFDPKSGLWVRNGTGVIRKEGRQLYWTFVSPQLGYWVAAMASPTSGL
Secondary structure 
SS confidence 
Disorder  ??????
??????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  VTITSGIQDIGTYHTIFLLTILAALALLVLILLCLLIYYCRRRCLKPRQQHRKLQLSGPS
Secondary structure 
SS confidence 
Disorder  ?????
????????
?????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  DNKRDQATSMSQLHLICGGPLEPTSSGDPEAPPPGSLHSAFSSSRDLASSRDDFFRAKPR
Secondary structure 
SS confidence 
Disorder  ???????????
???????????????????????????????????????????????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  SASRPAAEPPGARTVEGAGLKSARSVEGPGGLEPSLDEYRRGPAGAAAFLHEPPSPPPSF
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  DHYLGHKGAAESKTPDFLLSQSVDQLARPPSLSQPGQLIFCGSIDHLKDNVYRNVMPTLV
Secondary structure 
SS confidence 
Disorder  ???????????????????????????????????????????????????????
????
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  IPAHYVRLGGEAGAAGVGDEATPPEGSAAGPARPFPQPDPQRPLMQGHAGAGGDSGGGEG
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  WGGGRSAPVSGSVTIPVLFNESTMAQLNGELQALTEKKLLELGVKPHPRAWFVSLDGRSN
Secondary structure 
SS confidence 
Disorder  ??????????????????????????????????????????????
?
?
???
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  SQVRHSYIDLQAGSGGRSTDASLDSGVDVHEARPARRRLPREERERAQLPAPPPPAPPRL
Secondary structure 
SS confidence 
Disorder  ?
?
????????????????????????????????????????????????????
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  ALSEDTEPSSSESRTGLCSPEDNSLTPLLDEVVAPEGRAATVPRGRGRSRGDSSRSSASE
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........790.........800.........810.........820..
Sequence  LRRDSLTSPEDELGAEVGDEAGDKKSPWQRREERPLMVFNVK
Secondary structure 
SS confidence 
Disorder  ??????????????????????????
??
???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered ( 69%)
Alpha helix ( 10%)
Beta strand ( 19%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1h8l chain A

3D model

Region: 43 - 108
Aligned: 60
Modelled: 66
Confidence: 97.6%
Identity: 23%
PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa

Phyre2

PDB 1h8l chain A domain 1

3D model

Region: 43 - 110
Aligned: 62
Modelled: 68
Confidence: 97.5%
Identity: 21%
Fold: Prealbumin-like
Superfamily: Carboxypeptidase regulatory domain-like
Family: Carboxypeptidase regulatory domain

Phyre2

PDB 3mn8 chain A

3D model

Region: 43 - 104
Aligned: 56
Modelled: 62
Confidence: 97.4%
Identity: 30%
PDB header:hydrolase
Chain: A: PDB Molecule:lp15968p;
PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short

Phyre2

PDB 1uwy chain A

3D model

Region: 43 - 104
Aligned: 57
Modelled: 62
Confidence: 97.1%
Identity: 25%
PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m

Phyre2

PDB 2nsm chain A

3D model

Region: 43 - 104
Aligned: 55
Modelled: 61
Confidence: 97.1%
Identity: 29%
PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase n catalytic chain;
PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain

Phyre2

PDB 1uwy chain A domain 1

3D model

Region: 43 - 102
Aligned: 55
Modelled: 60
Confidence: 96.8%
Identity: 25%
Fold: Prealbumin-like
Superfamily: Carboxypeptidase regulatory domain-like
Family: Carboxypeptidase regulatory domain

Phyre2

PDB 3e8v chain A

3D model

Region: 42 - 102
Aligned: 57
Modelled: 61
Confidence: 96.5%
Identity: 33%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:possible transglutaminase-family protein;
PDBTitle: crystal structure of a possible transglutaminase-family2 protein proteolytic fragment from bacteroides fragilis

Phyre2

PDB 1cwv chain A domain 1

3D model

Region: 37 - 101
Aligned: 64
Modelled: 65
Confidence: 96.0%
Identity: 28%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Invasin/intimin cell-adhesion fragments
Family: Invasin/intimin cell-adhesion fragments

Phyre2

PDB 1cwv chain A domain 2

3D model

Region: 30 - 101
Aligned: 71
Modelled: 72
Confidence: 96.0%
Identity: 17%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Invasin/intimin cell-adhesion fragments
Family: Invasin/intimin cell-adhesion fragments

Phyre2

PDB 1f00 chain I domain 1

3D model

Region: 27 - 101
Aligned: 73
Modelled: 72
Confidence: 95.7%
Identity: 21%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Invasin/intimin cell-adhesion fragments
Family: Invasin/intimin cell-adhesion fragments

Phyre2

PDB 1cwv chain A domain 3

3D model

Region: 37 - 116
Aligned: 79
Modelled: 80
Confidence: 94.8%
Identity: 8%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Invasin/intimin cell-adhesion fragments
Family: Invasin/intimin cell-adhesion fragments

Phyre2

PDB 2ww8 chain A

3D model

Region: 43 - 110
Aligned: 66
Modelled: 68
Confidence: 94.6%
Identity: 20%
PDB header:cell adhesion
Chain: A: PDB Molecule:cell wall surface anchor family protein;
PDBTitle: structure of the pilus adhesin (rrga) from streptococcus2 pneumoniae

Phyre2

PDB 2gpz chain C

3D model

Region: 41 - 79
Aligned: 39
Modelled: 39
Confidence: 94.1%
Identity: 23%
PDB header:hydrolase
Chain: C: PDB Molecule:transthyretin-like protein;
PDBTitle: transthyretin-like protein from salmonella dublin

Phyre2

PDB 3qva chain B

3D model

Region: 42 - 79
Aligned: 38
Modelled: 38
Confidence: 93.3%
Identity: 16%
PDB header:hydrolase
Chain: B: PDB Molecule:transthyretin-like protein;
PDBTitle: structure of klebsiella pneumoniae 5-hydroxyisourate hydrolase

Phyre2

PDB 1cwv chain A

3D model

Region: 41 - 101
Aligned: 60
Modelled: 61
Confidence: 93.3%
Identity: 32%
PDB header:structural protein
Chain: A: PDB Molecule:invasin;
PDBTitle: crystal structure of invasin: a bacterial integrin-binding protein

Phyre2

PDB 3kpt chain A

3D model

Region: 42 - 109
Aligned: 66
Modelled: 68
Confidence: 93.2%
Identity: 15%
PDB header:cell adhesion
Chain: A: PDB Molecule:collagen adhesion protein;
PDBTitle: crystal structure of bcpa, the major pilin subunit of2 bacillus cereus

Phyre2

PDB 4ilv chain B

3D model

Region: 34 - 84
Aligned: 50
Modelled: 51
Confidence: 92.4%
Identity: 16%
PDB header:oxidoreductase
Chain: B: PDB Molecule:intradiol ring-cleavage dioxygenase;
PDBTitle: structure of the dioxygenase domain of sacte_2871, a novel dioxygenase2 carbohydrate-binding protein fusion from the cellulolytic bacterium3 streptomyces sp. sirexaa-e

Phyre2

PDB 1tta chain A

3D model

Region: 43 - 79
Aligned: 37
Modelled: 37
Confidence: 92.2%
Identity: 27%
Fold: Prealbumin-like
Superfamily: Transthyretin (synonym: prealbumin)
Family: Transthyretin (synonym: prealbumin)

Phyre2

PDB 1f86 chain A

3D model

Region: 43 - 79
Aligned: 37
Modelled: 37
Confidence: 92.0%
Identity: 27%
Fold: Prealbumin-like
Superfamily: Transthyretin (synonym: prealbumin)
Family: Transthyretin (synonym: prealbumin)

Phyre2

PDB 3pcc chain M

3D model

Region: 36 - 104
Aligned: 67
Modelled: 69
Confidence: 92.0%
Identity: 25%
Fold: Prealbumin-like
Superfamily: Aromatic compound dioxygenase
Family: Aromatic compound dioxygenase

Phyre2

PDB 2yew chain I

3D model

Region: 313 - 347
Aligned: 35
Modelled: 35
Confidence: 90.2%
Identity: 34%
PDB header:virus
Chain: I: PDB Molecule:e2 envelope glycoprotein;
PDBTitle: modeling barmah forest virus structural proteins

Phyre2

PDB 2klu chain A

3D model

Region: 319 - 364
Aligned: 45
Modelled: 45
Confidence: 76.1%
Identity: 27%
PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4

Phyre2

PDB 1xke chain A domain 1

3D model

Region: 252 - 271
Aligned: 20
Modelled: 20
Confidence: 69.8%
Identity: 30%
Fold: PH domain-like barrel
Superfamily: PH domain-like
Family: Ran-binding domain

Phyre2

PDB 2crf chain A domain 1

3D model

Region: 252 - 271
Aligned: 20
Modelled: 20
Confidence: 66.4%
Identity: 40%
Fold: PH domain-like barrel
Superfamily: PH domain-like
Family: Ran-binding domain

Phyre2

PDB 3ud2 chain C

3D model

Region: 143 - 238
Aligned: 71
Modelled: 71
Confidence: 51.1%
Identity: 24%
PDB header:protein binding
Chain: C: PDB Molecule:ankyrin-1;
PDBTitle: crystal structure of selenomethionine zu5a-zu5b protein domains of2 human erythrocyte ankyrin

Phyre2
1
c1h8lA_
2
d1h8la1
3
c3mn8A_
4
c1uwyA_
5
c2nsmA_
6
d1uwya1
7
c3e8vA_
8
d1cwva1
9
d1cwva2
10
d1f00i1
11
d1cwva3
12
c2ww8A_
13
c2gpzC_
14
c3qvaB_
15
c1cwvA_
16
c3kptA_
17
c4ilvB_
18
d1ttaa_
19
d1f86a_
20
d3pccm_
21
22
23
24
25
26
c2yewI_
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
c2kluA_
51
d1xkea1
52
d2crfa1
53
54
55
56
57
58
59
60
61
62
63
64
c3ud2C_
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1h8lA_
97.6 23 PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa
2d1h8la1
97.5 21 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
3c3mn8A_
97.4 30 PDB header:hydrolase
Chain: A: PDB Molecule:lp15968p;
PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short
4c1uwyA_
97.1 25 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m
5c2nsmA_
97.1 29 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase n catalytic chain;
PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain
6d1uwya1
96.8 25 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
7c3e8vA_
96.5 33 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:possible transglutaminase-family protein;
PDBTitle: crystal structure of a possible transglutaminase-family2 protein proteolytic fragment from bacteroides fragilis
8d1cwva1
96.0 28 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
9d1cwva2
96.0 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
10d1f00i1
95.7 21 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
11d1cwva3
94.8 8 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
12c2ww8A_
94.6 20 PDB header:cell adhesion
Chain: A: PDB Molecule:cell wall surface anchor family protein;
PDBTitle: structure of the pilus adhesin (rrga) from streptococcus2 pneumoniae
13c2gpzC_
94.1 23 PDB header:hydrolase
Chain: C: PDB Molecule:transthyretin-like protein;
PDBTitle: transthyretin-like protein from salmonella dublin
14c3qvaB_
93.3 16 PDB header:hydrolase
Chain: B: PDB Molecule:transthyretin-like protein;
PDBTitle: structure of klebsiella pneumoniae 5-hydroxyisourate hydrolase
15c1cwvA_
93.3 32 PDB header:structural protein
Chain: A: PDB Molecule:invasin;
PDBTitle: crystal structure of invasin: a bacterial integrin-binding protein
16c3kptA_
93.2 15 PDB header:cell adhesion
Chain: A: PDB Molecule:collagen adhesion protein;
PDBTitle: crystal structure of bcpa, the major pilin subunit of2 bacillus cereus
17c4ilvB_
92.4 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:intradiol ring-cleavage dioxygenase;
PDBTitle: structure of the dioxygenase domain of sacte_2871, a novel dioxygenase2 carbohydrate-binding protein fusion from the cellulolytic bacterium3 streptomyces sp. sirexaa-e
18d1ttaa_
92.2 27 Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
19d1f86a_
92.0 27 Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
20d3pccm_
92.0 25 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
21d1oo2a_
not modelled 91.9 27 Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
22d1kgia_
not modelled 91.9 30 Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
23d1tfpa_
not modelled 91.5 32 Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
24c3hj8A_
not modelled 91.2 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2-dioxygenase;
PDBTitle: crystal structure determination of catechol 1,2-dioxygenase from2 rhodococcus opacus 1cp in complex with 4-chlorocatechol
25c2xsuA_
not modelled 90.5 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2 dioxygenase;
PDBTitle: crystal structure of the a72g mutant of acinetobacter2 radioresistens catechol 1,2 dioxygenase
26c2yewI_
90.2 34 PDB header:virus
Chain: I: PDB Molecule:e2 envelope glycoprotein;
PDBTitle: modeling barmah forest virus structural proteins
27c2boyC_
not modelled 90.1 26 PDB header:oxidoreductase
Chain: C: PDB Molecule:3-chlorocatechol 1,2-dioxygenase;
PDBTitle: crystal structure of 3-chlorocatechol 1,2-dioxygenase from2 rhodococcus opacus 1cp
28c2h0eA_
not modelled 90.1 11 PDB header:hydrolase
Chain: A: PDB Molecule:transthyretin-like protein pucm;
PDBTitle: crystal structure of pucm in the absence of substrate
29c2h1xB_
not modelled 89.4 22 PDB header:hydrolase
Chain: B: PDB Molecule:5-hydroxyisourate hydrolase (formerly known as
PDBTitle: crystal structure of 5-hydroxyisourate hydrolase (formerly2 known as trp, transthyretin related protein)
30d2burb1
not modelled 89.2 21 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
31c3n9tA_
not modelled 89.1 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:pnpc;
PDBTitle: cryatal structure of hydroxyquinol 1,2-dioxygenase from pseudomonas2 putida dll-e4
32d1nkga1
not modelled 88.8 10 Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:Rhamnogalacturonase B, RhgB, middle domain
33c3th1C_
not modelled 88.4 20 PDB header:oxidoreductase
Chain: C: PDB Molecule:chlorocatechol 1,2-dioxygenase;
PDBTitle: crystal structure of chlorocatechol 1,2-dioxygenase from pseudomonas2 putida
34c2x5pA_
not modelled 87.8 16 PDB header:protein binding
Chain: A: PDB Molecule:fibronectin binding protein;
PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b
35d1s9aa_
not modelled 87.7 18 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
36c2azqA_
not modelled 87.2 28 PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2-dioxygenase;
PDBTitle: crystal structure of catechol 1,2-dioxygenase from pseudomonas arvilla2 c-1
37c2xicB_
not modelled 87.1 19 PDB header:cell adhesion
Chain: B: PDB Molecule:ancillary protein 1;
PDBTitle: pilus-presented adhesin, spy0125 (cpa), p212121 form (esrf data)
38d2bura1
not modelled 87.1 19 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
39d2b59b2
not modelled 87.0 22 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Pre-dockerin domain
40c1tmxA_
not modelled 86.1 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxyquinol 1,2-dioxygenase;
PDBTitle: crystal structure of hydroxyquinol 1,2-dioxygenase from2 nocardioides simplex 3e
41d1dmha_
not modelled 84.8 20 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
42c3j2wS_
not modelled 84.6 21 PDB header:virus
Chain: S: PDB Molecule:glycoprotein e2;
PDBTitle: electron cryo-microscopy of chikungunya virus
43c4jdzA_
not modelled 83.5 16 PDB header:cell adhesion
Chain: A: PDB Molecule:ser-asp rich fibrinogen/bone sialoprotein-binding protein
PDBTitle: structures of sdrd from staphylococcus aureus reveal the molecular2 mechanism of how the cell surface receptors recognize their ligands
44c3irpX_
not modelled 82.7 18 PDB header:cell adhesion
Chain: X: PDB Molecule:uro-adherence factor a;
PDBTitle: crystal structure of functional region of uafa from staphylococcus2 saprophyticus at 1.50 angstrom resolution
45c2qkiA_
not modelled 80.8 22 PDB header:immune system/hydrolase inhibitor
Chain: A: PDB Molecule:complement c3;
PDBTitle: human c3c in complex with the inhibitor compstatin
46d3pcca_
not modelled 80.3 23 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
47c2pz4A_
not modelled 79.6 19 PDB header:cell adhesion
Chain: A: PDB Molecule:protein gbs052;
PDBTitle: crystal structure of spab (gbs52), the minor pilin in gram-positive2 pathogen streptococcus agalactiae
48c3j0fK_
not modelled 77.9 24 PDB header:virus
Chain: K: PDB Molecule:e2 envelope glycoprotein;
PDBTitle: sindbis virion
49c2zyiB_
not modelled 76.5 11 PDB header:hydrolase
Chain: B: PDB Molecule:lipase, putative;
PDBTitle: a. fulgidus lipase with fatty acid fragment and calcium
50c2kluA_
76.1 27 PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4
51d1xkea1
69.8 30 Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Ran-binding domain
52d2crfa1
66.4 40 Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Ran-binding domain
53c2m20B_
not modelled 64.1 31 PDB header:signaling protein
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.
54d1qc6a_
not modelled 62.9 25 Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
55c1afoB_
not modelled 62.8 38 PDB header:integral membrane protein
Chain: B: PDB Molecule:glycophorin a;
PDBTitle: dimeric transmembrane domain of human glycophorin a, nmr,2 20 structures
56c1f00I_
not modelled 62.4 22 PDB header:cell adhesion
Chain: I: PDB Molecule:intimin;
PDBTitle: crystal structure of c-terminal 282-residue fragment of2 enteropathogenic e. coli intimin
57c3uxfA_
not modelled 61.0 23 PDB header:cell adhesion
Chain: A: PDB Molecule:fimbrial subunit type 1;
PDBTitle: structure of the fimbrial protein fimp from actonomyces oris
58c3m1iB_
not modelled 59.5 35 PDB header:protein transport
Chain: B: PDB Molecule:ran-specific gtpase-activating protein 1;
PDBTitle: crystal structure of yeast crm1 (xpo1p) in complex with yeast ranbp12 (yrb1p) and yeast rangtp (gsp1pgtp)
59c3pvmB_
not modelled 59.0 26 PDB header:immune system
Chain: B: PDB Molecule:cobra venom factor;
PDBTitle: structure of complement c5 in complex with cvf
60d1rrpb_
not modelled 56.9 35 Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Ran-binding domain
61c4l6eA_
not modelled 55.9 30 PDB header:ligase, isomerase
Chain: A: PDB Molecule:e3 sumo-protein ligase ranbp2;
PDBTitle: crystal structure of the ranbd1 fourth domain of e3 sumo-protein2 ligase ranbp2. northeast structural genomics consortium (nesg) target3 hr9193b
62c2xetB_
not modelled 55.5 13 PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly
63c4gptB_
not modelled 54.3 35 PDB header:protein transport/inhibitor
Chain: B: PDB Molecule:ran-specific gtpase-activating protein 1;
PDBTitle: crystal structure of kpt251 in complex with crm1-ran-ranbp1
64c3ud2C_
51.1 24 PDB header:protein binding
Chain: C: PDB Molecule:ankyrin-1;
PDBTitle: crystal structure of selenomethionine zu5a-zu5b protein domains of2 human erythrocyte ankyrin
65c4e9lA_
not modelled 47.9 12 PDB header:cell adhesion
Chain: A: PDB Molecule:attaching and effacing protein, pathogenesis factor;
PDBTitle: fdec, a novel broadly conserved escherichia coli adhesin eliciting2 protection against urinary tract infections
66c2kncA_
not modelled 46.4 26 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
67c2k1aA_
not modelled 45.0 30 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
68c3gm8A_
not modelled 43.4 15 PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 2, candidate beta-glycosidase;
PDBTitle: crystal structure of a beta-glycosidase from bacteroides vulgatus
69c3hrzA_
not modelled 42.0 23 PDB header:immune system
Chain: A: PDB Molecule:cobra venom factor;
PDBTitle: cobra venom factor (cvf) in complex with human factor b
70c3cmgA_
not modelled 37.3 14 PDB header:hydrolase
Chain: A: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
71c1m57H_
not modelled 36.3 22 PDB header:oxidoreductase
Chain: H: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant))
72c2yiuE_
not modelled 35.1 23 PDB header:oxidoreductase
Chain: E: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution
73d1jb0l_
not modelled 32.7 32 Fold:Photosystem I reaction center subunit XI, PsaL
Superfamily:Photosystem I reaction center subunit XI, PsaL
Family:Photosystem I reaction center subunit XI, PsaL
74c4b8cH_
not modelled 30.9 9 PDB header:hydrolase/cell cycle
Chain: H: PDB Molecule:general negative regulator of transcription subunit 1;
PDBTitle: nuclease module of the yeast ccr4-not complex
75c3waiA_
not modelled 30.6 20 PDB header:transferase, transport protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein, transmembrane
PDBTitle: crystal structure of the c-terminal globular domain of2 oligosaccharyltransferase (afaglb-l, o29867_arcfu) from archaeoglobus3 fulgidus as a mbp fusion
76c3uafA_
not modelled 29.5 9 PDB header:protein binding
Chain: A: PDB Molecule:ttr-52;
PDBTitle: crystal structure of a ttr-52 mutant of c. elegans
77d1g6xa_
not modelled 29.2 23 Fold:BPTI-like
Superfamily:BPTI-like
Family:Small Kunitz-type inhibitors & BPTI-like toxins
78d3dtub2
not modelled 29.1 17 Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
79c4a02A_
not modelled 29.0 14 PDB header:chitin binding protein
Chain: A: PDB Molecule:chitin binding protein;
PDBTitle: x-ray crystallographic structure of efcbm33a
80d1dema_
not modelled 28.4 29 Fold:BPTI-like
Superfamily:BPTI-like
Family:Small Kunitz-type inhibitors & BPTI-like toxins
81c2jp2A_
not modelled 28.2 30 PDB header:signaling protein
Chain: A: PDB Molecule:sprouty-related, evh1 domain-containing protein
PDBTitle: solution structure and resonance assignment of the n-2 terminal evh1 domain from the human spred2 protein3 (sprouty-related protein with evh1 domain isoform 2)
82c2b59B_
not modelled 28.2 23 PDB header:hydrolase/structural protein
Chain: B: PDB Molecule:cellulosomal scaffolding protein a;
PDBTitle: the type ii cohesin dockerin complex
83c4acqC_
not modelled 27.6 13 PDB header:hydrolase inhibitor
Chain: C: PDB Molecule:alpha-2-macroglobulin;
PDBTitle: alpha-2 macroglobulin
84d1xoda1
not modelled 27.5 29 Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
85c3fn9B_
not modelled 27.0 19 PDB header:hydrolase
Chain: B: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
86d1i2ha_
not modelled 26.1 19 Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
87d1dtxa_
not modelled 26.1 29 Fold:BPTI-like
Superfamily:BPTI-like
Family:Small Kunitz-type inhibitors & BPTI-like toxins
88d1uuba_
not modelled 25.6 23 Fold:BPTI-like
Superfamily:BPTI-like
Family:Small Kunitz-type inhibitors & BPTI-like toxins
89c2odyF_
not modelled 25.5 31 PDB header:blood clotting/blood clotting inhibitor
Chain: F: PDB Molecule:boophilin;
PDBTitle: thrombin-bound boophilin displays a functional and accessible2 reactive-site loop
90d1bika1
not modelled 25.2 7 Fold:BPTI-like
Superfamily:BPTI-like
Family:Small Kunitz-type inhibitors & BPTI-like toxins
91d1bpia_
not modelled 25.2 23 Fold:BPTI-like
Superfamily:BPTI-like
Family:Small Kunitz-type inhibitors & BPTI-like toxins
92d1brbi_
not modelled 24.7 23 Fold:BPTI-like
Superfamily:BPTI-like
Family:Small Kunitz-type inhibitors & BPTI-like toxins
93d1ejmb_
not modelled 24.6 23 Fold:BPTI-like
Superfamily:BPTI-like
Family:Small Kunitz-type inhibitors & BPTI-like toxins
94c2q8iB_
not modelled 24.2 18 PDB header:transferase
Chain: B: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase component of
PDBTitle: pyruvate dehydrogenase kinase isoform 3 in complex with antitumor drug2 radicicol
95d1p2ji_
not modelled 23.6 21 Fold:BPTI-like
Superfamily:BPTI-like
Family:Small Kunitz-type inhibitors & BPTI-like toxins
96c2pn5A_
not modelled 23.5 17 PDB header:immune system
Chain: A: PDB Molecule:thioester-containing protein i;
PDBTitle: crystal structure of tep1r
97c2l8sA_
not modelled 23.5 33 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
98d1egxa_
not modelled 23.4 10 Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
99c1z8yN_
not modelled 23.3 23 PDB header:virus
Chain: N: PDB Molecule:spike glycoprotein e2;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
100c1z8yJ_
not modelled 23.3 23 PDB header:virus
Chain: J: PDB Molecule:spike glycoprotein e2;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
101c1z8yP_
not modelled 23.3 23 PDB header:virus
Chain: P: PDB Molecule:spike glycoprotein e2;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
102c1z8yL_
not modelled 23.3 23 PDB header:virus
Chain: L: PDB Molecule:spike glycoprotein e2;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
103d1irha_
not modelled 22.3 8 Fold:BPTI-like
Superfamily:BPTI-like
Family:Small Kunitz-type inhibitors & BPTI-like toxins
104c2k1iA_
not modelled 22.2 56 PDB header:antimicrobial protein
Chain: A: PDB Molecule:mucosal alpha-defensin;
PDBTitle: synthesis, structure and activities of an oral mucosal alpha-defensin2 from rhesus macaque
105c3cwbQ_
not modelled 21.5 27 PDB header:oxidoreductase
Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein;
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
106c3kioB_
not modelled 21.3 26 PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease h2 subunit b;
PDBTitle: mouse rnase h2 complex
107c1nt9G_
not modelled 21.3 17 PDB header:transcription, transferase
Chain: G: PDB Molecule:dna-directed rna polymerase ii 19 kd polypeptide;
PDBTitle: complete 12-subunit rna polymerase ii
108c1yc0I_
not modelled 20.7 36 PDB header:hydrolase/inhibitor
Chain: I: PDB Molecule:kunitz-type protease inhibitor 1;
PDBTitle: short form hgfa with first kunitz domain from hai-1
109d1tfxc_
not modelled 20.4 7 Fold:BPTI-like
Superfamily:BPTI-like
Family:Small Kunitz-type inhibitors & BPTI-like toxins
110c3uamD_
not modelled 20.2 29 PDB header:protein binding
Chain: D: PDB Molecule:chitin binding domain;
PDBTitle: crystal structure of a chitin binding domain from burkholderia2 pseudomallei

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite