PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2pz4A_

Fold library id	PDB Header	Molecule	Title
c2pz4A_	PDB header: cell adhesion	Chain: A: PDB Molecule: protein gbs052;	PDBTitle: crystal structure of spab (gbs52), the minor pilin in gram-2 positive pathogen streptococcus agalactiae

Links to external resources
Added to library: Tue Mar 16 14:03:51 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A A H Q L T I V H L E A R D I D R P N P Q L E I A P K E G T P I E G V L Y Q L Y Q L K S T E D G D L L A H W N S L T I T E L K K Q A Q Q V F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S S
T T S
S S
S S
S
T T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E A T T N Q Q G K A T F N Q L P D G I Y Y G L A V K A G E K N R N V S A F L V D L S E D K V I Y P K I I W S T G E L D L L K V G V D G D T K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S T T
T T B
S S
B
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K P L A G V V F E L Y E K N G R T P I R V K N G V H S Q D I D A A K H L E T D S S G H I R I S G L I H G D Y V L K E I E T Q S G Y Q I G Q A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S S
B
T T
S T T
B S
T T S S
T T B
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . .

Sequence E T A V T I E K S K T V T V T I E N K K V P T P K V P S R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S B

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	A	H	Q	L	T	I	V	H	L	E	A	R	D	I	D	R	P	N	P	Q	L	E	I	A	P	K	E	G	T	P	I	E	G	V	L	Y	Q	L	Y	Q	L	K	S	T	E	D	G	D	L	L	A	H	W	N	S	L	T	I	T	E	L	K	K	Q	A	Q	Q	V	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														G	G	G		S	S			T	T	S			S	S					S	S									S					T	T							T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	A	T	T	N	Q	Q	G	K	A	T	F	N	Q	L	P	D	G	I	Y	Y	G	L	A	V	K	A	G	E	K	N	R	N	V	S	A	F	L	V	D	L	S	E	D	K	V	I	Y	P	K	I	I	W	S	T	G	E	L	D	L	L	K	V	G	V	D	G	D	T	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	S									S										T	T				T	T	B								S	S								B																T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	P	L	A	G	V	V	F	E	L	Y	E	K	N	G	R	T	P	I	R	V	K	N	G	V	H	S	Q	D	I	D	A	A	K	H	L	E	T	D	S	S	G	H	I	R	I	S	G	L	I	H	G	D	Y	V	L	K	E	I	E	T	Q	S	G	Y	Q	I	G	Q	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S								T	T		S	S		B				T	T					S	T	T		B	S						T	T	S									S												T	T	B					S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Sequence	E	T	A	V	T	I	E	K	S	K	T	V	T	V	T	I	E	N	K	K	V	P	T	P	K	V	P	S	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S										B