Return to main results Retrieve Phyre Job Id

Job DescriptionA2A699
Confidence21.32%DateWed Jul 10 14:20:28 BST 2013
Rank107Aligned Residues54
% Identity17%Templatec1nt9G_
PDB info PDB header:transcription, transferaseChain: G: PDB Molecule:dna-directed rna polymerase ii 19 kd polypeptide; PDBTitle: complete 12-subunit rna polymerase ii
Resolution4.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   215....220.........230.........240.........250.........260.........270....
Predicted Secondary structure 































Query SS confidence 



























































Query Sequence  VHLLTGNGTEVPLSGPIHLSLPVPSEPRALAVGTSIPAWRFDPKSGLWVRNGTGVIRKEG
Query Conservation 
 
    
 




 









    
   





 


  
 


 
 
 
 


Alig confidence 












.














.........





















Template Conservation 
  
   

 
 
.
     
    
   .........                     
Template Sequence  VVSCSQHGFEVQV. GPMKVFVTKHLMPQD. . . . . . . . . LTFNAGSNPPSYQSSEDVITIK
Template Known Secondary structure 

TT


.SSS

TTTSSSS.........


BTT

SSS


SS
Template Predicted Secondary structure 


.



.........









Template SS confidence 



























































   91........100... ......110........ .120.........130.........140
 
   275...
Predicted Secondary structure 
Query SS confidence 



Query Sequence  RQLY
Query Conservation   


Alig confidence 



Template Conservation 
 

Template Sequence  SRIR
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 



   141...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D