Return to main results Retrieve Phyre Job Id

Job DescriptionA2A699
Confidence43.41%DateWed Jul 10 14:20:28 BST 2013
Rank68Aligned Residues162
% Identity15%Templatec3gm8A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:glycoside hydrolase family 2, candidate beta-glycosidase; PDBTitle: crystal structure of a beta-glycosidase from bacteroides vulgatus
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   42.......50.........60.........70.........80.........90.........100.
Predicted Secondary structure 























Query SS confidence 



























































Query Sequence  LIKVQVYVSGELVPLARASVDVFGNRTLLAAGTTDSEGVATLPLSYRLGTWVLVTAARPG
Query Conservation   


 
 
  
 









 

 
 



 
 


 
 
 



 
  






 
Alig confidence 









.......













.

















.








Template Conservation     
 



 .......  


  

 


 .           
 
 

 .
 

 
  
Template Sequence  TIPVVIYTNC. . . . . . . DAVELFINNVSLGS. KPYTGEQLIWLVPYSPGK. IEARGIKKG
Template Known Secondary structure  SS.......STT.
SSS
B
SS.TT
Template Predicted Secondary structure 

.......


.








.

Template SS confidence 



























































   642.......650. ........660..... ....670.........680... ......690..
 
   102.......110.........120.........130.........140.........150.........160.
Predicted Secondary structure 






























Query SS confidence 



























































Query Sequence  FLTNSVPWRVDKLPLYASVSLYLLPERPATLILYEDLVHILLGSPGARSQPWVQFQRRAA
Query Conservation 




 


 




 




 




 


  




 
  
  
 
 

 
 

  

Alig confidence 













....




























.........



Template Conservation 
 
      
    ....  
 
  
   
 


 
   
 
   
 ......... 
  
Template Sequence  KIVATDCYQSAEAP. . . . HSVALASNKYSVKAGSDEVIRIEIDITDK. . . . . . . . . NGIP
Template Known Secondary structure 


S....S
SB

TTS


T.........TS
B
Template Predicted Secondary structure 




....








.........



Template SS confidence 



























































   693......700...... ...710.........720.........730..... ....
 
   162.......170.........180.........190........ .200.........210.....
Predicted Secondary structure 



























......




Query SS confidence 




































. . . . . .
















Query Sequence  RLPVSSTYSQLWASLTPASTQQEMRAFPAFLGTEASS. . . . . . SGNGSWLELIPLAAVSV
Query Conservation   

 
  

 


 

    
 
   

 


 
   ......

   



 






Alig confidence 








............















......
















Template Conservation     
   
 ............  
 
 
 
 
  

                 
 
  

Template Sequence  CPYASNELS. . . . . . . . . . . . FHVSGPLRLLGVDNGNPTDMFPYQQPHCRCFRGKCVVLL
Template Known Secondary structure 
TT


............SS


TT



TTSS
BTT
Template Predicted Secondary structure 





............


















Template SS confidence 



























































   740........ .750.........760.........770.........780.......
 
   216...220.. ....... 230.......
Predicted Secondary structure 



.


....
Query SS confidence 






.






. . . .







Query Sequence  HLLTGNG. TEVPLSG. . . . PIHLSLPV
Query Conservation   
    
. 




 ....







Alig confidence 






.






....







Template Conservation 
     
 
 
 
   

      
 
Template Sequence  QSDEEKGKGTLTVQGTKLVEKKLIIEV
Template Known Secondary structure 
SS
S
TTSB

Template Predicted Secondary structure 









Template SS confidence 


























   788.790.........800.........810....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D