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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3pvmB_

Fold library idPDB HeaderMoleculeTitle
c3pvmB_PDB header: immune systemChain: B: PDB Molecule: cobra venom factor;PDBTitle: structure of complement c5 in complex with cvf


Added to library: Sat Jan 22 08:59:31 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ALYTLITPAVLRTDTEEQILVEAHGDSTPKQLDIFVHDFPRKQKTLFQTRVDMNPAGGMLVTPTIEIPAK
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Known secondary structure (DSSP)

STTS

S

S
TTT

S
TTTTT




TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence EVSTDSRQNQYVVVQVTGPQVRLEKVVLLSYQSSFLFIQTDKGIYTPGSPVLYRVFSMDHNTSKMNKTVI
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Known secondary structure (DSSP) S



TTS

TT




S
S
TT





S




 .........150.........160.........170.........180.........190.........200.........210
Sequence VEFQTPEGILVSSNSVDLNFFWPYNLPDLVSLGTWRIVAKYEHSPENYTAYFDVRKYVLPSFEVRLQPSE
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Known secondary structure (DSSP)
TTS

SS




SS


TT





SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence KFFYIDGNENFHVSITARYLYGEEVEGVAFVLFGVKIDDAKKSIPDSLTRIPIIDGDGKATLKRDTFRSR
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Known secondary structure (DSSP) STT



TTT

TT
GGG
BTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence FPNLNELVGHTLYASVTVMTESGSDMVVTEQSGIHIVASPYQIHFTKTPKYFKPGMPYELTVYVTNPDGS
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Known secondary structure (DSSP)


TTTTSS
S
S

SSS
S
TTS
TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence PAAHVPVVSEAFHSMGTTLSDGTAKLILNIPLNAQSLPITVRTNHGDLPRERQATKSMTAIAYQTQGGSG
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Known secondary structure (DSSP) B

S
GGGT

TTS

TT




TTS
TTTS



GGG

 .........430.........440.........450.........460.........470.........480.........490
Sequence NYLHVAITSTEIKPGDNLPVNFNVKGNANSLKQIKYFTYLILNKGKIFKVGRQPRRDGQNLVTMNLHITP
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Known secondary structure (DSSP)



SB
TT
S
TT

TT

TT
S

G
 .........500.........510.........520.........530.........540.........550.........560
Sequence DLIPSFRFVAYYQVGNNEIVADSVWVDVKDTCMGTLVVKGDNLIQMPGAAMKIKLEGDPGARVGLVAVDK
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Known secondary structure (DSSP) GGTTTTTB



SS





B
TT

TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence AVYVLNDKYKISQAKIWDTIEKSDFGCTAGSGQNNLGVFEDAGLALTTSTNLNTKQRSAAKCPQPANEDG
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Known secondary structure (DSSP) TTTTS

TT



SSB

SS
TTS
B





SS

S


TTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence FIADSDIISRSDFPKSWLWLTKDLTEEPNSQGISSKTMSFYLRDSITTWVVLAVSFTPTKGICVAEPYEI
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Known secondary structure (DSSP) S

GGG


B



S

S


TTS


S
SSBTTTB

B


 .........710.........720.........730.........740.........750.........760.........770
Sequence RVMKVFFIDLQMPYSVVKNEQVEIRAILHNYVNEDIYVRVELLYNPAFCSASTKGQRYRQQFPIKALSSR
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Known secondary structure (DSSP) B

S



S
TT


SSS



TTS

SSS


SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence AVPFVIVPLEQGLHDVEIKASVQEALWSDGVRKKLKVVPEGVQKSIVTIVKLDPRAKGVGGTQLEVIKAR
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Known secondary structure (DSSP)
S
SSSS

SS
TTTT
SSS


 .........850.........860.........870.........880.........890.........900.........910
Sequence KLDDRVPDTEIETKIIIQGDPHKDLNLDITIELPDREVPIRYRINYENALLARTVETKLNQDITVTASGD
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Known secondary structure (DSSP)


SS
TT








TT
SS

TTTSS

SS


S
 .........920.........930.........940.........950.........960.........970.........980
Sequence GKATMTILTFYNAQLVCNKFHLNVSVENIHLNKGALMLKICTRYLGEVDSTMTIIDISMLTGFLPDAEDL
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Known secondary structure (DSSP) S




S








SSS


TTB
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence TRLSKGVDRYISRYEVDNNMAQKVAVIIYLNKVSHSEDECLHFKILKHFEVGFIQPGSVKVYSYYNLDEK
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Known secondary structure (DSSP)
SSS




TTS
S
SSS
S


S



TTBTT

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence CTKFYHPDKGTGLLNKICIGNVCRCAGETCSSLNHQERIDVPLQIEKACETNVDYVYKTKLLRIEEQDGN
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Known secondary structure (DSSP)
BTTBSS




TT


SS






SS

T
TT

TT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence DIYVMDVLEVIKQGTDENPRAKTHQYISQRKCQEALNLKVNDDYLIWGSRSDLLPTKDKISYIITKNTWI
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Known secondary structure (DSSP)

SSS
TTTS
GGG


TT

GGG

SSS


TT
 .........1200.........1210.........1220.....
Sequence ERWPHEDECQEEEFQKLCDDFAQFSYTLTEFGCPT
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Known secondary structure (DSSP)


TGGGGSTTTS




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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