Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	L	S	R	A	A	I	V	D	Q	L	K	E	I	V	G	A	D	R	V	I	T	D	E	T	V	L	K	K	N	S	I	D	R	F	R	K	F	P	D	I	H	G	I	Y	T	L	P	I	P	A	A	V	V	K	L	G	S	T
Secondary structure
SS confidence
Disorder		?	?	?	?																																					?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	Q	V	S	R	V	L	N	F	M	N	A	H	K	I	N	G	V	P	R	T	G	A	S	A	T	E	G	G	L	E	T	V	V	E	N	S	V	V	L	D	G	S	A	M	N	Q	I	I	N	I	D	I	E	N	M	Q	A	T	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	C	G	V	P	L	E	V	L	E	N	A	L	R	E	K	G	Y	T	T	G	H	S	P	Q	S	K	P	L	A	Q	M	G	G	L	V	A	T	R	S	I	G	Q	F	S	T	L	Y	G	A	I	E	D	M	V	V	G	L	E	A
Secondary structure
SS confidence
Disorder																										?		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	L	A	D	G	T	V	T	R	I	K	N	V	P	R	R	A	A	G	P	D	I	R	H	I	I	I	G	N	E	G	A	L	C	Y	I	T	E	V	T	V	K	I	F	K	F	T	P	E	N	N	L	F	Y	G	Y	I	L	E	D
Secondary structure
SS confidence
Disorder													?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		M	K	T	G	F	N	I	L	R	E	I	M	V	E	G	Y	R	P	S	I	A	R	L	Y	D	A	E	D	G	T	Q	H	F	T	H	F	A	D	G	K	C	V	L	I	F	M	A	E	G	N	P	R	I	A	K	V	T	G	E	G
Secondary structure
SS confidence
Disorder																																?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		I	A	E	I	V	A	R	Y	P	Q	C	Q	R	V	D	S	K	L	I	E	T	W	F	N	N	L	N	W	G	P	D	K	V	A	A	E	R	V	Q	I	L	K	T	G	N	M	G	F	T	T	E	V	S	G	C	W	S	C	I	H
Secondary structure
SS confidence
Disorder																																		?									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		E	I	Y	E	S	V	I	N	R	I	R	T	E	F	P	H	A	D	D	I	T	M	L	G	G	H	S	S	H	S	Y	Q	N	G	T	N	M	Y	F	V	Y	D	Y	N	V	V	D	C	K	P	E	E	E	I	D	K	Y	H	N	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		L	N	K	I	I	C	E	E	T	I	R	L	G	G	S	M	V	H	H	H	G	I	G	K	H	R	V	H	W	S	K	L	E	H	G	S	A	W	A	L	L	E	G	L	K	K	Q	F	D	P	N	G	I	M	N	T	G	T	I	Y
Secondary structure
SS confidence
Disorder																																																												?	?
Disorder confidence
		.	.	.	.
Sequence		P	I	E	K
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3pm9 chain A Region: 6 - 480 Aligned: 452 Modelled: 467 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of a putative dehydrogenase (rpa1076) from2 rhodopseudomonas palustris cga009 at 2.57 a resolution Phyre2 PDB 1wve chain B Region: 5 - 479 Aligned: 461 Modelled: 475 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: B: PDB Molecule:4-cresol dehydrogenase [hydroxylating] PDBTitle: p-cresol methylhydroxylase: alteration of the structure of2 the flavoprotein subunit upon its binding to the3 cytochrome subunit Phyre2 PDB 3bw7 chain A Region: 10 - 481 Aligned: 452 Modelled: 471 Confidence: 100.0% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:cytokinin dehydrogenase 1; PDBTitle: maize cytokinin oxidase/dehydrogenase complexed with the allenic2 cytokinin analog ha-1 Phyre2 PDB 1ahu chain B Region: 5 - 483 Aligned: 471 Modelled: 475 Confidence: 100.0% Identity: 17% PDB header:flavoenzyme Chain: B: PDB Molecule:vanillyl-alcohol oxidase; PDBTitle: structure of the octameric flavoenzyme vanillyl-alcohol2 oxidase in complex with p-cresol Phyre2 PDB 2uuv chain C Region: 6 - 476 Aligned: 404 Modelled: 422 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: C: PDB Molecule:alkyldihydroxyacetonephosphate synthase; PDBTitle: alkyldihydroxyacetonephosphate synthase in p1 Phyre2 PDB 2exr chain A Region: 18 - 481 Aligned: 448 Modelled: 452 Confidence: 100.0% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:cytokinin dehydrogenase 7; PDBTitle: x-ray structure of cytokinin oxidase/dehydrogenase (ckx)2 from arabidopsis thaliana at5g21482 Phyre2 PDB 2bvf chain A Region: 32 - 483 Aligned: 431 Modelled: 448 Confidence: 100.0% Identity: 14% PDB header:oxidase Chain: A: PDB Molecule:6-hydroxy-d-nicotine oxidase; PDBTitle: crystal structure of 6-hydoxy-d-nicotine oxidase from2 arthrobacter nicotinovorans. crystal form 3 (p1) Phyre2 PDB 1zr6 chain A Region: 9 - 482 Aligned: 455 Modelled: 470 Confidence: 100.0% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:glucooligosaccharide oxidase; PDBTitle: the crystal structure of an acremonium strictum glucooligosaccharide2 oxidase reveals a novel flavinylation Phyre2 PDB 3fwa chain A Region: 8 - 482 Aligned: 463 Modelled: 470 Confidence: 100.0% Identity: 16% PDB header:flavoprotein Chain: A: PDB Molecule:reticuline oxidase; PDBTitle: structure of berberine bridge enzyme, c166a variant in complex with2 (s)-reticuline Phyre2 PDB 3d2h chain A Region: 8 - 482 Aligned: 463 Modelled: 475 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:berberine bridge-forming enzyme; PDBTitle: structure of berberine bridge enzyme from eschscholzia californica,2 monoclinic crystal form Phyre2 PDB 1f0x chain A Region: 6 - 484 Aligned: 438 Modelled: 470 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:d-lactate dehydrogenase; PDBTitle: crystal structure of d-lactate dehydrogenase, a peripheral2 membrane respiratory enzyme. Phyre2 PDB 3pop chain D Region: 36 - 481 Aligned: 432 Modelled: 446 Confidence: 100.0% Identity: 14% PDB header:oxidoreductase Chain: D: PDB Molecule:gilr oxidase; PDBTitle: the crystal structure of gilr, an oxidoreductase that catalyzes the2 terminal step of gilvocarcin biosynthesis Phyre2 PDB 2wdw chain B Region: 32 - 482 Aligned: 437 Modelled: 451 Confidence: 100.0% Identity: 14% PDB header:oxidoreductase Chain: B: PDB Molecule:putative hexose oxidase; PDBTitle: the native crystal structure of the primary hexose oxidase (2 dbv29) in antibiotic a40926 biosynthesis Phyre2 PDB 2ipi chain D Region: 33 - 482 Aligned: 439 Modelled: 442 Confidence: 100.0% Identity: 14% PDB header:oxidoreductase Chain: D: PDB Molecule:aclacinomycin oxidoreductase (aknox); PDBTitle: crystal structure of aclacinomycin oxidoreductase Phyre2 PDB 2vfv chain A Region: 36 - 476 Aligned: 408 Modelled: 427 Confidence: 100.0% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:xylitol oxidase; PDBTitle: alditol oxidase from streptomyces coelicolor a3(2): complex2 with sulphite Phyre2 PDB 2y3r chain C Region: 36 - 481 Aligned: 433 Modelled: 446 Confidence: 100.0% Identity: 15% PDB header:oxidoreductase Chain: C: PDB Molecule:taml; PDBTitle: structure of the tirandamycin-bound fad-dependent2 tirandamycin oxidase taml in p21 space group Phyre2 PDB 1i19 chain B Region: 36 - 481 Aligned: 442 Modelled: 446 Confidence: 100.0% Identity: 13% PDB header:oxidoreductase Chain: B: PDB Molecule:cholesterol oxidase; PDBTitle: crystal structure of cholesterol oxidase from b.sterolicum Phyre2 PDB 3js8 chain A Region: 32 - 476 Aligned: 443 Modelled: 445 Confidence: 100.0% Identity: 12% PDB header:oxidoreductase Chain: A: PDB Molecule:cholesterol oxidase; PDBTitle: solvent-stable cholesterol oxidase Phyre2 PDB 1wvf chain A domain 2 Region: 5 - 227 Aligned: 216 Modelled: 223 Confidence: 100.0% Identity: 25% Fold: FAD-binding/transporter-associated domain-like Superfamily: FAD-binding/transporter-associated domain-like Family: FAD-linked oxidases, N-terminal domain Phyre2 PDB 1e8g chain A domain 2 Region: 5 - 227 Aligned: 218 Modelled: 219 Confidence: 100.0% Identity: 21% Fold: FAD-binding/transporter-associated domain-like Superfamily: FAD-binding/transporter-associated domain-like Family: FAD-linked oxidases, N-terminal domain Phyre2 1 c3pm9A_ 2 c1wveB_ 3 c3bw7A_ 4 c1ahuB_ 5 c2uuvC_ 6 c2exrA_ 7 c2bvfA_ 8 c1zr6A_ 9 c3fwaA_ 10 c3d2hA_ 11 c1f0xA_ 12 c3popD_ 13 c2wdwB_ 14 c2ipiD_ 15 c2vfvA_ 16 c2y3rC_ 17 c1i19B_ 18 c3js8A_ 19 d1wvfa2 20 d1e8ga2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3pm9A_ 100.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of a putative dehydrogenase (rpa1076) from2 rhodopseudomonas palustris cga009 at 2.57 a resolution 2 c1wveB_ 100.0 18 PDB header:oxidoreductase Chain: B: PDB Molecule:4-cresol dehydrogenase [hydroxylating] PDBTitle: p-cresol methylhydroxylase: alteration of the structure of2 the flavoprotein subunit upon its binding to the3 cytochrome subunit 3 c3bw7A_ 100.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:cytokinin dehydrogenase 1; PDBTitle: maize cytokinin oxidase/dehydrogenase complexed with the allenic2 cytokinin analog ha-1 4 c1ahuB_ 100.0 17 PDB header:flavoenzyme Chain: B: PDB Molecule:vanillyl-alcohol oxidase; PDBTitle: structure of the octameric flavoenzyme vanillyl-alcohol2 oxidase in complex with p-cresol 5 c2uuvC_ 100.0 25 PDB header:transferase Chain: C: PDB Molecule:alkyldihydroxyacetonephosphate synthase; PDBTitle: alkyldihydroxyacetonephosphate synthase in p1 6 c2exrA_ 100.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:cytokinin dehydrogenase 7; PDBTitle: x-ray structure of cytokinin oxidase/dehydrogenase (ckx)2 from arabidopsis thaliana at5g21482 7 c2bvfA_ 100.0 14 PDB header:oxidase Chain: A: PDB Molecule:6-hydroxy-d-nicotine oxidase; PDBTitle: crystal structure of 6-hydoxy-d-nicotine oxidase from2 arthrobacter nicotinovorans. crystal form 3 (p1) 8 c1zr6A_ 100.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:glucooligosaccharide oxidase; PDBTitle: the crystal structure of an acremonium strictum glucooligosaccharide2 oxidase reveals a novel flavinylation 9 c3fwaA_ 100.0 16 PDB header:flavoprotein Chain: A: PDB Molecule:reticuline oxidase; PDBTitle: structure of berberine bridge enzyme, c166a variant in complex with2 (s)-reticuline 10 c3d2hA_ 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:berberine bridge-forming enzyme; PDBTitle: structure of berberine bridge enzyme from eschscholzia californica,2 monoclinic crystal form 11 c1f0xA_ 100.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:d-lactate dehydrogenase; PDBTitle: crystal structure of d-lactate dehydrogenase, a peripheral2 membrane respiratory enzyme. 12 c3popD_ 100.0 14 PDB header:oxidoreductase Chain: D: PDB Molecule:gilr oxidase; PDBTitle: the crystal structure of gilr, an oxidoreductase that catalyzes the2 terminal step of gilvocarcin biosynthesis 13 c2wdwB_ 100.0 14 PDB header:oxidoreductase Chain: B: PDB Molecule:putative hexose oxidase; PDBTitle: the native crystal structure of the primary hexose oxidase (2 dbv29) in antibiotic a40926 biosynthesis 14 c2ipiD_ 100.0 14 PDB header:oxidoreductase Chain: D: PDB Molecule:aclacinomycin oxidoreductase (aknox); PDBTitle: crystal structure of aclacinomycin oxidoreductase 15 c2vfvA_ 100.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:xylitol oxidase; PDBTitle: alditol oxidase from streptomyces coelicolor a3(2): complex2 with sulphite 16 c2y3rC_ 100.0 15 PDB header:oxidoreductase Chain: C: PDB Molecule:taml; PDBTitle: structure of the tirandamycin-bound fad-dependent2 tirandamycin oxidase taml in p21 space group 17 c1i19B_ 100.0 13 PDB header:oxidoreductase Chain: B: PDB Molecule:cholesterol oxidase; PDBTitle: crystal structure of cholesterol oxidase from b.sterolicum 18 c3js8A_ 100.0 12 PDB header:oxidoreductase Chain: A: PDB Molecule:cholesterol oxidase; PDBTitle: solvent-stable cholesterol oxidase 19 d1wvfa2 100.0 25 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain 20 d1e8ga2 100.0 21 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain 21 d1f0xa2 not modelled 100.0 22 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain 22 d1w1oa2 not modelled 100.0 18 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain 23 d2i0ka2 not modelled 100.0 21 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain 24 d1hska1 not modelled 100.0 15 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain 25 d1uxya1 not modelled 100.0 12 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain 26 c1hskA_ not modelled 100.0 15 PDB header:oxidoreductase Chain: A: PDB Molecule:udp-n-acetylenolpyruvoylglucosamine reductase; PDBTitle: crystal structure of s. aureus murb 27 c1mbbA_ not modelled 99.9 12 PDB header:oxidoreductase Chain: A: PDB Molecule:uridine diphospho-n-acetylenolpyruvylglucosamine PDBTitle: oxidoreductase 28 c2yvsA_ not modelled 99.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:glycolate oxidase subunit glce; PDBTitle: crystal structure of glycolate oxidase subunit glce from thermus2 thermophilus hb8 29 c3i99A_ not modelled 99.9 14 PDB header:oxidoreductase Chain: A: PDB Molecule:udp-n-acetylenolpyruvoylglucosamine reductase; PDBTitle: the crystal structure of the udp-n-acetylenolpyruvoylglucosamine2 reductase from the vibrio cholerae o1 biovar tor 30 d1e8ga1 not modelled 99.8 16 Fold:Ferredoxin-like Superfamily:FAD-linked oxidases, C-terminal domain Family:Vanillyl-alcohol oxidase-like 31 c2gquA_ not modelled 99.8 19 PDB header:oxidoreductase Chain: A: PDB Molecule:udp-n-acetylenolpyruvylglucosamine reductase; PDBTitle: crystal structure of udp-n-acetylenolpyruvylglucosamine2 reductase (murb) from thermus caldophilus 32 d1wvfa1 not modelled 99.7 14 Fold:Ferredoxin-like Superfamily:FAD-linked oxidases, C-terminal domain Family:Vanillyl-alcohol oxidase-like 33 d1f0xa1 not modelled 99.6 12 Fold:Ferredoxin-like Superfamily:FAD-linked oxidases, C-terminal domain Family:D-lactate dehydrogenase 34 d1w1oa1 not modelled 99.1 10 Fold:Ferredoxin-like Superfamily:FAD-linked oxidases, C-terminal domain Family:Cytokinin dehydrogenase 1 35 d1ffvc2 not modelled 97.0 14 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 36 c1ffuF_ not modelled 96.8 14 PDB header:hydrolase Chain: F: PDB Molecule:cutm, flavoprotein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor 37 c1n62C_ not modelled 96.7 15 PDB header:oxidoreductase Chain: C: PDB Molecule:carbon monoxide dehydrogenase medium chain; PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state 38 c1t3qF_ not modelled 96.7 13 PDB header:oxidoreductase Chain: F: PDB Molecule:quinoline 2-oxidoreductase medium subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 39 d1n62c2 not modelled 96.4 13 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 40 d1v97a6 not modelled 96.4 10 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 41 d3b9jb2 not modelled 96.0 13 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 42 d1t3qc2 not modelled 96.0 13 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 43 c3etrM_ not modelled 95.7 7 PDB header:oxidoreductase Chain: M: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of xanthine oxidase in complex with2 lumazine 44 c3hrdC_ not modelled 95.7 13 PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinate dehydrogenase fad-subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 45 c3b9jJ_ not modelled 95.7 7 PDB header:oxidoreductase Chain: J: PDB Molecule:xanthine oxidase; PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine 46 c1rm6E_ not modelled 95.2 13 PDB header:oxidoreductase Chain: E: PDB Molecule:4-hydroxybenzoyl-coa reductase beta subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica 47 c2w3rG_ not modelled 94.9 16 PDB header:oxidoreductase Chain: G: PDB Molecule:xanthine dehydrogenase; PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine 48 d2i0ka1 not modelled 94.6 10 Fold:Ferredoxin-like Superfamily:FAD-linked oxidases, C-terminal domain Family:Cholesterol oxidase 49 d1jroa4 not modelled 94.5 14 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 50 c1wygA_ not modelled 93.8 10 PDB header:oxidoreductase Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s) 51 d1rm6b2 not modelled 93.1 10 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 52 c2uvaI_ not modelled 71.9 25 PDB header:transferase Chain: I: PDB Molecule:fatty acid synthase beta subunits; PDBTitle: crystal structure of fatty acid synthase from thermomyces2 lanuginosus at 3.1 angstrom resolution. this file contains3 the beta subunits of the fatty acid synthase. the entire4 crystal structure consists of one heterododecameric fatty5 acid synthase and is described in remark 400 53 c2vkzH_ not modelled 69.8 28 PDB header:transferase Chain: H: PDB Molecule:fatty acid synthase subunit beta; PDBTitle: structure of the cerulenin-inhibited fungal fatty acid2 synthase type i multienzyme complex 54 d1jaka1 not modelled 64.5 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain 55 c3nsnA_ not modelled 61.7 14 PDB header:hydrolase Chain: A: PDB Molecule:n-acetylglucosaminidase; PDBTitle: crystal structure of insect beta-n-acetyl-d-hexosaminidase ofhex12 complexed with tmg-chitotriomycin 56 d1yhta1 not modelled 61.6 24 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain 57 c3gh7A_ not modelled 59.6 19 PDB header:hydrolase Chain: A: PDB Molecule:beta-hexosaminidase; PDBTitle: crystal structure of beta-hexosaminidase from paenibacillus2 sp. ts12 in complex with galnac 58 d1qbaa3 not modelled 59.6 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain 59 c2gvsA_ not modelled 59.4 33 PDB header:lipid binding protein Chain: A: PDB Molecule:chemosensory protein csp-sg4; PDBTitle: nmr solution structure of cspsg4 60 d1kx9b_ not modelled 57.7 25 Fold:alpha-alpha superhelix Superfamily:Chemosensory protein Csp2 Family:Chemosensory protein Csp2 61 c2yl8A_ not modelled 56.8 19 PDB header:hydrolase Chain: A: PDB Molecule:beta-n-acetylhexosaminidase; PDBTitle: inhibition of the pneumococcal virulence factor strh and2 molecular insights into n-glycan recognition and3 hydrolysis 62 d2gjxa1 not modelled 56.5 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain 63 d1nowa1 not modelled 56.5 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain 64 c2ylaA_ not modelled 56.4 14 PDB header:hydrolase Chain: A: PDB Molecule:beta-n-acetylhexosaminidase; PDBTitle: inhibition of the pneumococcal virulence factor strh and2 molecular insights into n-glycan recognition and3 hydrolysis 65 d1n8va_ not modelled 56.0 25 Fold:alpha-alpha superhelix Superfamily:Chemosensory protein Csp2 Family:Chemosensory protein Csp2 66 c1nouA_ not modelled 55.2 19 PDB header:hydrolase Chain: A: PDB Molecule:beta-hexosaminidase beta chain; PDBTitle: native human lysosomal beta-hexosaminidase isoform b 67 c1jk9D_ not modelled 55.2 18 PDB header:oxidoreductase Chain: D: PDB Molecule:copper chaperone for superoxide dismutase; PDBTitle: heterodimer between h48f-ysod1 and yccs 68 c2gjxE_ not modelled 54.9 14 PDB header:hydrolase Chain: E: PDB Molecule:beta-hexosaminidase alpha chain; PDBTitle: crystallographic structure of human beta-hexosaminidase a 69 c1m04A_ not modelled 54.6 10 PDB header:hydrolase Chain: A: PDB Molecule:beta-n-acetylhexosaminidase; PDBTitle: mutant streptomyces plicatus beta-hexosaminidase (d313n) in complex2 with product (glcnac) 70 c3rcnA_ not modelled 53.6 14 PDB header:hydrolase Chain: A: PDB Molecule:beta-n-acetylhexosaminidase; PDBTitle: crystal structure of beta-n-acetylhexosaminidase from arthrobacter2 aurescens 71 c3lmyA_ not modelled 51.4 19 PDB header:hydrolase Chain: A: PDB Molecule:beta-hexosaminidase subunit beta; PDBTitle: the crystal structure of beta-hexosaminidase b in complex with2 pyrimethamine 72 c3rpmA_ not modelled 49.7 19 PDB header:hydrolase Chain: A: PDB Molecule:beta-n-acetyl-hexosaminidase; PDBTitle: crystal structure of the first gh20 domain of a novel beta-n-acetyl-2 hexosaminidase strh from streptococcus pneumoniae r6 73 c1qupA_ not modelled 47.8 18 PDB header:chaperone Chain: A: PDB Molecule:superoxide dismutase 1 copper chaperone; PDBTitle: crystal structure of the copper chaperone for superoxide2 dismutase 74 c1qbaA_ not modelled 45.3 19 PDB header:glycosyl hydrolase Chain: A: PDB Molecule:chitobiase; PDBTitle: bacterial chitobiase, glycosyl hydrolase family 20 75 c3m7iA_ not modelled 42.9 8 PDB header:transferase Chain: A: PDB Molecule:transketolase; PDBTitle: crystal structure of transketolase in complex with thiamine2 diphosphate, ribose-5-phosphate(pyranose form) and3 magnesium ion 76 c3s8sA_ not modelled 42.2 5 PDB header:transcription Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd1a; PDBTitle: crystal structure of the rrm domain of human setd1a 77 c2epoB_ not modelled 41.0 10 PDB header:hydrolase Chain: B: PDB Molecule:n-acetyl-beta-d-glucosaminidase; PDBTitle: n-acetyl-b-d-glucosaminidase (gcna) from streptococcus gordonii 78 d1itza2 not modelled 40.6 4 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:TK-like Pyr module 79 d2r8oa1 not modelled 40.5 0 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:TK-like Pyr module 80 c2yswB_ not modelled 39.0 23 PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystal structure of the 3-dehydroquinate dehydratase from aquifex2 aeolicus vf5 81 c3mhyC_ not modelled 37.4 12 PDB header:signaling protein Chain: C: PDB Molecule:pii-like protein pz; PDBTitle: a new pii protein structure 82 c2rd5D_ not modelled 36.4 22 PDB header:protein binding Chain: D: PDB Molecule:pii protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana 83 d1umdb1 not modelled 35.1 15 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 84 d1ik6a1 not modelled 32.9 15 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 85 d1r9ja1 not modelled 32.3 11 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:TK-like Pyr module 86 d1w85b1 not modelled 30.6 11 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 87 d1vfja_ not modelled 29.7 12 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 88 c1ik6A_ not modelled 28.9 12 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate dehydrogenase; PDBTitle: 3d structure of the e1beta subunit of pyruvate2 dehydrogenase from the archeon pyrobaculum aerophilum 89 d2piia_ not modelled 28.0 12 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 90 c2rneA_ not modelled 27.0 9 PDB header:rna binding protein Chain: A: PDB Molecule:tia1 protein; PDBTitle: solution structure of the second rna recognition motif2 (rrm) of tia-1 91 d1gpua2 not modelled 26.9 11 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:TK-like Pyr module 92 d2ozlb1 not modelled 26.9 15 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 93 d1g7sa2 not modelled 26.5 13 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 94 c2dgxA_ not modelled 26.4 9 PDB header:rna binding protein Chain: A: PDB Molecule:kiaa0430 protein; PDBTitle: solution structure of the rna recognition motif in kiaa04302 protein 95 d1vm6a3 not modelled 26.2 20 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 96 d1poib_ not modelled 26.1 19 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase beta subunit-like 97 d1ltka_ not modelled 25.8 7 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 98 c1vm6B_ not modelled 25.6 20 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrodipicolinate reductase; PDBTitle: crystal structure of dihydrodipicolinate reductase (tm1520) from2 thermotoga maritima at 2.27 a resolution 99 d2cqpa1 not modelled 25.5 9 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 100 c2bp7F_ not modelled 24.9 13 PDB header:oxidoreductase Chain: F: PDB Molecule:2-oxoisovalerate dehydrogenase beta subunit; PDBTitle: new crystal form of the pseudomonas putida branched-chain2 dehydrogenase (e1) 101 d1qy7a_ not modelled 24.0 13 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 102 d1pama4 not modelled 23.0 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 103 c1bplA_ not modelled 22.0 14 PDB header:glycosyltransferase Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase; PDBTitle: glycosyltransferase 104 d2ns1b1 not modelled 22.0 13 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 105 c1ni4D_ not modelled 21.6 15 PDB header:oxidoreductase Chain: D: PDB Molecule:pyruvate dehydrogenase e1 component: beta PDBTitle: human pyruvate dehydrogenase 106 c1yl7F_ not modelled 20.9 20 PDB header:oxidoreductase Chain: F: PDB Molecule:dihydrodipicolinate reductase; PDBTitle: the crystal structure of mycobacterium tuberculosis2 dihydrodipicolinate reductase (rv2773c) in complex with nadh (crystal3 form c) 107 d1rk8a_ not modelled 20.7 11 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0