PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1vm6B_

Fold library id	PDB Header	Molecule	Title
c1vm6B_	PDB header: oxidoreductase	Chain: B: PDB Molecule: dihydrodipicolinate reductase;	PDBTitle: crystal structure of dihydrodipicolinate reductase (tm1520)2 from thermotoga maritima at 2.27 a resolution

Links to external resources
Added to library: Tue Mar 16 14:09:31 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence H H H H H M K Y G I V G Y S G R M G Q E I Q K V F S E K G H E L V L K V D V N G V E E L D S P D V V I D F S S P E A L P K T V D L C K K Y R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T T S T T
T T
S
S
S
G G G T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A G L V L G T T A L K E E H L Q M L R E L S K E V P V V Q A Y N F S I G I N V L K R F L S E L V K V L E D W D V E I V E T H H R F K K D A P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T S
S
S T T S
T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S G T A I L L E S A L G K S V P I H S L R V G G V P G D H V V V F G N I G E T I E I K H R A I S R T V F A I G A L K A A E F L V G K D P G M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
T T
S S
S
T T T
S

. . . . . . . .

Sequence Y S F E E V I F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	H	H	H	H	H	M	K	Y	G	I	V	G	Y	S	G	R	M	G	Q	E	I	Q	K	V	F	S	E	K	G	H	E	L	V	L	K	V	D	V	N	G	V	E	E	L	D	S	P	D	V	V	I	D	F	S	S	P	E	A	L	P	K	T	V	D	L	C	K	K	Y	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S							T	T	T	S													T	T									T	T						S			S						S		G	G	G												T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	G	L	V	L	G	T	T	A	L	K	E	E	H	L	Q	M	L	R	E	L	S	K	E	V	P	V	V	Q	A	Y	N	F	S	I	G	I	N	V	L	K	R	F	L	S	E	L	V	K	V	L	E	D	W	D	V	E	I	V	E	T	H	H	R	F	K	K	D	A	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S													T	T	T	S						S																				S	T	T	S										T	T				S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	G	T	A	I	L	L	E	S	A	L	G	K	S	V	P	I	H	S	L	R	V	G	G	V	P	G	D	H	V	V	V	F	G	N	I	G	E	T	I	E	I	K	H	R	A	I	S	R	T	V	F	A	I	G	A	L	K	A	A	E	F	L	V	G	K	D	P	G	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	S										T	T												S	S										S		T															T	T			S
	.	.	.	.	.	.	.	.
Sequence	Y	S	F	E	E	V	I	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)