PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1jk9D_

Fold library id	PDB Header	Molecule	Title
c1jk9D_	PDB header: oxidoreductase	Chain: D: PDB Molecule: copper chaperone for superoxide dismutase;	PDBTitle: heterodimer between h48f-ysod1 and yccs

Links to external resources
Added to library: Tue Mar 16 13:03:33 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T N D T Y E A T Y A I P M H C E N C V N D I K A C L K N V P G I N S L N F D I E Q Q I M S V E S S V A P S T I I N T L R N C G K D A I I R G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S S S
T T G G G T S S
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A G K P N S S A V A I L E T F Q K Y T I D Q K K D T A V R G L A R I V Q V G E N K T L F D I T V N G V P E A G N Y H A S I H E K G D V S K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T S S S
T T S
T T
S T T S S
S
T T G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V E S T G K V W H K F D E P I E C F N E S D L G K N L Y S G K T F L S A P L P T W Q L I G R S F V I S K S L N H P E N E P S S V K D Y S F L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G S S
S
S
S S S T T
S
G G G T T T S
S
G G G S T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . .

Sequence G V I A R S A G V W E N N K Q V C A C T G K T V W E E R K D A L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	N	D	T	Y	E	A	T	Y	A	I	P	M	H	C	E	N	C	V	N	D	I	K	A	C	L	K	N	V	P	G	I	N	S	L	N	F	D	I	E	Q	Q	I	M	S	V	E	S	S	V	A	P	S	T	I	I	N	T	L	R	N	C	G	K	D	A	I	I	R	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S	T	T	S									S	S		T	T								G	G	G	T							S	S											T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	G	K	P	N	S	S	A	V	A	I	L	E	T	F	Q	K	Y	T	I	D	Q	K	K	D	T	A	V	R	G	L	A	R	I	V	Q	V	G	E	N	K	T	L	F	D	I	T	V	N	G	V	P	E	A	G	N	Y	H	A	S	I	H	E	K	G	D	V	S	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	T	T	S									S	S			T	T	S		T	T			S												T	T												S	S										S					T	T	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	E	S	T	G	K	V	W	H	K	F	D	E	P	I	E	C	F	N	E	S	D	L	G	K	N	L	Y	S	G	K	T	F	L	S	A	P	L	P	T	W	Q	L	I	G	R	S	F	V	I	S	K	S	L	N	H	P	E	N	E	P	S	S	V	K	D	Y	S	F	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	S	S		S							S									S	S	S	T	T											S			G	G	G	T	T	T	S									S		G	G	G	S	T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Sequence	G	V	I	A	R	S	A	G	V	W	E	N	N	K	Q	V	C	A	C	T	G	K	T	V	W	E	E	R	K	D	A	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T