Fold library entry viewer: c1qbaA_

Added to library: Tue Mar 16 12:17:54 2010
Links to external resources

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	Q	Q	L	V	D	Q	L	S	Q	L	K	L	N	V	K	M	L	D	N	R	A	G	E	N	G	V	D	C	A	A	L	G	A	D	W	A	S	C	N	R	V	L	F	T	L	S	N	D	G	Q	A	I	D	G	K	D	W	V	I	Y	F	H	S	P	R	Q	T	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T										T	T	G	G	G	G	T			T	T	T	T	T		G	G	G													S	S		B												S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	D	N	D	Q	F	K	I	A	H	L	T	G	D	L	Y	K	L	E	P	T	A	K	F	S	G	F	P	A	G	K	A	V	E	I	P	V	V	A	E	Y	W	Q	L	F	R	N	D	F	L	P	R	W	Y	A	T	S	G	D	A	K	P	K	M	L	A	N	T	D	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	T	T							S	T	T								T	T				B		T	T											S				S	G	G	G	S									T	T	S						G	G	G	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	N	L	D	Q	F	V	A	P	F	T	G	D	Q	W	K	R	T	K	D	D	K	N	I	L	M	T	P	A	S	R	F	V	S	N	A	D	L	Q	T	L	P	A	G	A	L	R	G	K	I	V	P	T	P	M	Q	V	K	V	H	A	Q	D	A	D	L	R	K	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		G	G	G	T	B					T	T	T	T		S	S	T	T															T	T	T						G	G	G	G	T	T			S	S			S												T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	L	D	L	S	T	L	V	K	P	A	A	D	V	V	S	Q	R	F	A	L	L	G	V	P	V	Q	T	N	G	Y	P	I	K	T	D	I	Q	P	G	K	F	K	G	A	M	A	V	S	G	A	Y	E	L	K	I	G	K	K	E	A	Q	V	I	G	F	D	Q	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S															T	T																G	G	G			G	G	G	S	S	T	T								S	S							S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	V	F	Y	G	L	Q	S	I	L	S	L	V	P	S	D	G	S	G	K	I	A	T	L	D	A	S	D	A	P	R	F	P	Y	R	G	I	F	L	D	V	A	R	N	F	H	K	K	D	A	V	L	R	L	L	D	Q	M	A	A	Y	K	L	N	K	F	H	F	H	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S		S	S	S														S		S									S	S	S																	T	T									B
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	D	D	E	G	W	R	I	E	I	P	G	L	P	E	L	T	E	V	G	G	Q	R	C	H	D	L	S	E	T	T	C	L	L	P	Q	Y	G	Q	G	P	D	V	Y	G	G	F	F	S	R	Q	D	Y	I	D	I	I	K	Y	A	Q	A	R	Q	I	E	V	I	P	E	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S		B		B			T	T		T					T	T	T				S		T	T		S	S	S	B				T	T	S		S	S						B															T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	D	M	P	A	H	A	R	A	A	V	V	S	M	E	A	R	Y	K	K	L	H	A	A	G	K	E	Q	E	A	N	E	F	R	L	V	D	P	T	D	T	S	N	T	T	S	V	Q	F	F	N	R	Q	S	Y	L	N	P	C	L	D	S	S	Q	R	F	V	D	K	V	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S																		T	T							T	T					T	T								T	T	S			G	G	G	S			T	T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	G	E	I	A	Q	M	H	K	E	A	G	Q	P	I	K	T	W	H	F	G	G	D	E	A	K	N	I	R	L	G	A	G	Y	T	D	K	A	K	P	E	P	G	K	G	I	I	D	Q	G	N	E	D	K	P	W	A	K	S	Q	V	C	Q	T	M	I	K	E	G	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T				S							T	T		S		G	G	G	S	T	T				T	T	S			T	T	S					G	G	G				T	T	T	T										T	T	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	A	D	M	E	H	L	P	S	Y	F	G	Q	E	V	S	K	L	V	K	A	H	G	I	D	R	M	Q	A	W	Q	D	G	L	K	D	A	E	S	S	K	A	F	A	T	S	R	V	G	V	N	F	W	D	T	L	Y	W	G	G	F	D	S	V	N	D	W	A	N	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	G	G	G																T	T								G	G	G	G	T	T	S	S		G	G	G	S	S	S	S										T	T	T	T											T	T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	Y	E	V	V	V	S	N	P	D	Y	V	Y	M	D	F	P	Y	E	V	N	P	D	E	R	G	Y	Y	W	G	T	R	F	S	D	E	R	K	V	F	S	F	A	P	D	N	M	P	Q	N	A	E	T	S	V	D	R	D	G	N	H	F	N	A	K	S	D	K	P	W	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												B	T	T	S		S	S	S		T	T	S		S			S	S		S												T	T	S	G	G	G	G	G	G	T				T	T	S									S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	G	A	Y	G	L	S	A	Q	L	W	S	E	T	Q	R	T	D	P	Q	M	E	Y	M	I	F	P	R	A	L	S	V	A	E	R	S	W	H	R	A	G	W	E	Q	D	Y	R	A	G	R	E	Y	K	G	G	E	T	H	F	V	D	T	Q	A	L	E	K	D	W	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S									T	T			S									T	T														T	T	S					T	T					T	T	T				S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	F	A	N	I	L	G	Q	R	E	L	A	K	L	D	K	G	G	V	A	Y	R	L	P	V	P	G	A	R	V	A	G	G	K	L	E	A	N	I	A	L	P	G	L	G	I	E	Y	S	T	D	G	G	K	Q	W	Q	R	Y	D	A	K	A	K	P	A	V	S	G	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T								T	T														T	T							S	S	T	T	S						S	S	S	S	S	S						T	T	S			B			S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.
Sequence	Q	V	R	S	V	S	P	D	G	K	R	Y	S	R	A	E	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	S	S		B

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PDB structure

FASTA sequence

Hidden Markov model

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