Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP24203
DateThu Jan 5 11:41:12 GMT 2012
Unique Job IDfdfbaccd160fb744

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1nijA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yjia;
PDBTitle: yjia protein
Confidence and coverage
Confidence:100.0% Coverage:100%
317 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTL
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Disorder  ????






































?















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   .........70.........80.........90.........100.........110.........120
Sequence  TNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQR
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?
































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   .........130.........140.........150.........160.........170.........180
Sequence  YLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGEAEKLHERLARINARA
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   .........190.........200.........210.........220.........230.........240
Sequence  PVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQNDISSIVVELDYPVDISEV
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??


????
?
??
??




















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   .........250.........260.........270.........280.........290.........300
Sequence  SRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKPHSTMVFI
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Disorder 















































?????






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   .........310........
Sequence  GIQLPEEEIRAAFAGLRK
Secondary structure 






SS confidence 

















Disorder 














???
Disorder confidence 

















 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1nij chain A

3D model

Region: 2 - 318
Aligned: 317
Modelled: 317
Confidence: 100.0%
Identity: 100%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yjia;
PDBTitle: yjia protein

Phyre2

PDB 1nij chain A domain 1

3D model

Region: 2 - 223
Aligned: 222
Modelled: 222
Confidence: 100.0%
Identity: 100%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 1nij chain A domain 2

3D model

Region: 224 - 318
Aligned: 95
Modelled: 95
Confidence: 99.9%
Identity: 100%
Fold: Hypothetical protein YjiA, C-terminal domain
Superfamily: Hypothetical protein YjiA, C-terminal domain
Family: Hypothetical protein YjiA, C-terminal domain

Phyre2

PDB 2hf9 chain A

3D model

Region: 2 - 186
Aligned: 164
Modelled: 185
Confidence: 99.5%
Identity: 25%
PDB header:hydrolase, metal binding protein
Chain: A: PDB Molecule:probable hydrogenase nickel incorporation
PDBTitle: crystal structure of hypb from methanocaldococcus2 jannaschii in the triphosphate form

Phyre2

PDB 2wsm chain B

3D model

Region: 2 - 186
Aligned: 146
Modelled: 168
Confidence: 99.4%
Identity: 24%
PDB header:metal binding protein
Chain: B: PDB Molecule:hydrogenase expression/formation protein (hypb);
PDBTitle: crystal structure of hydrogenase maturation factor hypb from2 archaeoglobus fulgidus

Phyre2

PDB 3nxs chain A

3D model

Region: 3 - 172
Aligned: 145
Modelled: 170
Confidence: 99.3%
Identity: 17%
PDB header:transport protein
Chain: A: PDB Molecule:lao/ao transport system atpase;
PDBTitle: crystal structure of lao/ao transport system from mycobacterium2 smegmatis bound to gdp

Phyre2

PDB 3dm5 chain A

3D model

Region: 6 - 185
Aligned: 167
Modelled: 180
Confidence: 99.3%
Identity: 17%
PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.

Phyre2

PDB 2qm8 chain A domain 1

3D model

Region: 3 - 176
Aligned: 148
Modelled: 174
Confidence: 99.3%
Identity: 20%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 1yrb chain A domain 1

3D model

Region: 6 - 186
Aligned: 177
Modelled: 181
Confidence: 99.3%
Identity: 22%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 3dmd chain A

3D model

Region: 6 - 189
Aligned: 169
Modelled: 184
Confidence: 99.2%
Identity: 21%
PDB header:transport protein
Chain: A: PDB Molecule:signal recognition particle receptor;
PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus

Phyre2

PDB 2iy3 chain A

3D model

Region: 2 - 177
Aligned: 163
Modelled: 173
Confidence: 99.2%
Identity: 16%
PDB header:rna-binding
Chain: A: PDB Molecule:signal recognition particle protein ffh;
PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome

Phyre2

PDB 2cnw chain F

3D model

Region: 2 - 189
Aligned: 176
Modelled: 188
Confidence: 99.2%
Identity: 17%
PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy

Phyre2

PDB 1qzx chain A domain 3

3D model

Region: 6 - 185
Aligned: 173
Modelled: 180
Confidence: 99.2%
Identity: 16%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 2yhs chain A

3D model

Region: 2 - 185
Aligned: 174
Modelled: 184
Confidence: 99.2%
Identity: 17%
PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the e. coli srp receptor ftsy

Phyre2

PDB 1zu4 chain A

3D model

Region: 2 - 185
Aligned: 177
Modelled: 184
Confidence: 99.1%
Identity: 19%
PDB header:protein transport
Chain: A: PDB Molecule:ftsy;
PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212

Phyre2

PDB 2v3c chain C

3D model

Region: 2 - 185
Aligned: 171
Modelled: 184
Confidence: 99.1%
Identity: 20%
PDB header:signaling protein
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii

Phyre2

PDB 2j37 chain W

3D model

Region: 6 - 185
Aligned: 167
Modelled: 180
Confidence: 99.1%
Identity: 14%
PDB header:ribosome
Chain: W: PDB Molecule:signal recognition particle 54 kda protein
PDBTitle: model of mammalian srp bound to 80s rncs

Phyre2

PDB 2j7p chain A

3D model

Region: 6 - 195
Aligned: 175
Modelled: 190
Confidence: 99.1%
Identity: 16%
PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy

Phyre2

PDB 2f1r chain A

3D model

Region: 6 - 104
Aligned: 92
Modelled: 99
Confidence: 99.1%
Identity: 17%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis
PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb)

Phyre2

PDB 2qy9 chain A

3D model

Region: 1 - 185
Aligned: 175
Modelled: 185
Confidence: 99.0%
Identity: 18%
PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy

Phyre2
1

c1nijA_
2

d1nija1
3

d1nija2
4

c2hf9A_
5

c2wsmB_
6

c3nxsA_
7

c3dm5A_
8

d2qm8a1
9

d1yrba1
10

c3dmdA_
11

c2iy3A_
12

c2cnwF_
13

d1qzxa3
14

c2yhsA_
15

c1zu4A_
16

c2v3cC_
17

c2j37W_
18

c2j7pA_
19

c2f1rA_
20

c2qy9A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1nijA_



100.0 100 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yjia;
PDBTitle: yjia protein
2d1nija1



100.0 100 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
3d1nija2



99.9 100 Fold:Hypothetical protein YjiA, C-terminal domain
Superfamily:Hypothetical protein YjiA, C-terminal domain
Family:Hypothetical protein YjiA, C-terminal domain
4c2hf9A_



99.5 25 PDB header:hydrolase, metal binding protein
Chain: A: PDB Molecule:probable hydrogenase nickel incorporation
PDBTitle: crystal structure of hypb from methanocaldococcus2 jannaschii in the triphosphate form
5c2wsmB_



99.4 24 PDB header:metal binding protein
Chain: B: PDB Molecule:hydrogenase expression/formation protein (hypb);
PDBTitle: crystal structure of hydrogenase maturation factor hypb from2 archaeoglobus fulgidus
6c3nxsA_



99.3 17 PDB header:transport protein
Chain: A: PDB Molecule:lao/ao transport system atpase;
PDBTitle: crystal structure of lao/ao transport system from mycobacterium2 smegmatis bound to gdp
7c3dm5A_



99.3 17 PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
8d2qm8a1



99.3 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
9d1yrba1



99.3 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
10c3dmdA_



99.2 21 PDB header:transport protein
Chain: A: PDB Molecule:signal recognition particle receptor;
PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus
11c2iy3A_



99.2 16 PDB header:rna-binding
Chain: A: PDB Molecule:signal recognition particle protein ffh;
PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
12c2cnwF_



99.2 17 PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
13d1qzxa3



99.2 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
14c2yhsA_



99.2 17 PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the e. coli srp receptor ftsy
15c1zu4A_



99.1 19 PDB header:protein transport
Chain: A: PDB Molecule:ftsy;
PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212
16c2v3cC_



99.1 20 PDB header:signaling protein
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii
17c2j37W_



99.1 14 PDB header:ribosome
Chain: W: PDB Molecule:signal recognition particle 54 kda protein
PDBTitle: model of mammalian srp bound to 80s rncs
18c2j7pA_



99.1 16 PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
19c2f1rA_



99.1 17 PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis
PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb)
20c2qy9A_



99.0 18 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy
21c1vmaA_



not modelled 99.0 15 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
22c3b9qA_



not modelled 99.0 14 PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
23d1ls1a2



not modelled 99.0 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
24c2og2A_



not modelled 99.0 16 PDB header:protein transport
Chain: A: PDB Molecule:putative signal recognition particle receptor;
PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
25c1qzwC_



not modelled 98.9 18 PDB header:signaling protein/rna
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication
26c2j289_



not modelled 98.9 18 PDB header:ribosome
Chain: 9: PDB Molecule:signal recognition particle 54;
PDBTitle: model of e. coli srp bound to 70s rncs
27d1vmaa2



not modelled 98.9 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
28c3md0A_



not modelled 98.8 21 PDB header:transport protein
Chain: A: PDB Molecule:arginine/ornithine transport system atpase;
PDBTitle: crystal structure of arginine/ornithine transport system2 atpase from mycobacterium tuberculosis bound to gdp (a ras-3 like gtpase superfamily protein)
29d2p67a1



not modelled 98.7 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
30d2qy9a2



not modelled 98.7 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
31c2wwwB_



not modelled 98.7 22 PDB header:transport protein
Chain: B: PDB Molecule:methylmalonic aciduria type a protein,
PDBTitle: crystal structure of methylmalonic acidemia type a protein
32c2px0D_



not modelled 98.6 21 PDB header:biosynthetic protein
Chain: D: PDB Molecule:flagellar biosynthesis protein flhf;
PDBTitle: crystal structure of flhf complexed with gmppnp/mg(2+)
33d1okkd2



not modelled 98.5 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
34c1wf3A_



not modelled 98.4 20 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of gtp-binding protein tt1341 from thermus2 thermophilus hb8
35d1xjca_



not modelled 98.3 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
36c1egaB_



not modelled 98.3 16 PDB header:hydrolase
Chain: B: PDB Molecule:protein (gtp-binding protein era);
PDBTitle: crystal structure of a widely conserved gtpase era
37c2e87A_



not modelled 98.3 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1320;
PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp
38c2qptA_



not modelled 98.3 20 PDB header:endocytosis
Chain: A: PDB Molecule:eh domain-containing protein-2;
PDBTitle: crystal structure of an ehd atpase involved in membrane remodelling
39c2qthA_



not modelled 98.2 17 PDB header:nucleotide binding protein
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp
40c2gedB_



not modelled 98.2 17 PDB header:protein transport, signaling protein
Chain: B: PDB Molecule:signal recognition particle receptor beta
PDBTitle: signal recognition particle receptor beta-subunit in2 nucleotide-free dimerized form
41c1j8yF_



not modelled 98.0 14 PDB header:signaling protein
Chain: F: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant
42c3k53B_



not modelled 98.0 16 PDB header:metal transport
Chain: B: PDB Molecule:ferrous iron transport protein b;
PDBTitle: crystal structure of nfeob from p. furiosus
43c3i8sC_



not modelled 97.9 25 PDB header:transport protein
Chain: C: PDB Molecule:ferrous iron transport protein b;
PDBTitle: structure of the cytosolic domain of e. coli feob, nucleotide-free2 form
44c1wb1C_



not modelled 97.9 20 PDB header:protein synthesis
Chain: C: PDB Molecule:translation elongation factor selb;
PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp
45c2gzaB_



not modelled 97.9 19 PDB header:hydrolase
Chain: B: PDB Molecule:type iv secretion system protein virb11;
PDBTitle: crystal structure of the virb11 atpase from the brucella suis type iv2 secretion system in complex with sulphate
46d1g6oa_



not modelled 97.9 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
47d1j8yf2



not modelled 97.8 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
48c1xzqA_



not modelled 97.8 18 PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf
49c3ievA_



not modelled 97.8 18 PDB header:nucleotide binding protein/rna
Chain: A: PDB Molecule:gtp-binding protein era;
PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna
50c3degC_



not modelled 97.8 18 PDB header:ribosome
Chain: C: PDB Molecule:gtp-binding protein lepa;
PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp
51c2h5eB_



not modelled 97.8 22 PDB header:translation
Chain: B: PDB Molecule:peptide chain release factor rf-3;
PDBTitle: crystal structure of e.coli polypeptide release factor rf3
52d1jwyb_



not modelled 97.7 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
53d1cp2a_



not modelled 97.7 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
54c2oaq1_



not modelled 97.7 19 PDB header:hydrolase
Chain: 1: PDB Molecule:type ii secretion system protein;
PDBTitle: crystal structure of the archaeal secretion atpase gspe in complex2 with phosphate
55c3gehA_



not modelled 97.6 22 PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn
56c1g7tA_



not modelled 97.6 20 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if2/eif5b;
PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp
57d2dy1a2



not modelled 97.6 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
58c2hjgA_



not modelled 97.6 17 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein enga;
PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp
59d2bv3a2



not modelled 97.6 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
60c2qa5A_



not modelled 97.6 14 PDB header:cell cycle, structural protein
Chain: A: PDB Molecule:septin-2;
PDBTitle: crystal structure of sept2 g-domain
61c3ftqA_



not modelled 97.6 17 PDB header:cell cycle
Chain: A: PDB Molecule:septin-2;
PDBTitle: crystal structure of septin 2 in complex with gppnhp and2 mg2+
62d1np6a_



not modelled 97.6 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
63c2bvnB_



not modelled 97.5 20 PDB header:elongation factor
Chain: B: PDB Molecule:elongation factor tu;
PDBTitle: e. coli ef-tu:gdpnp in complex with the antibiotic2 enacyloxin iia
64d1g3qa_



not modelled 97.5 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
65c2bm0A_



not modelled 97.5 25 PDB header:elongation factor
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a
66c1d2eA_



not modelled 97.5 26 PDB header:rna binding protein
Chain: A: PDB Molecule:elongation factor tu (ef-tu);
PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp
67c2ywfA_



not modelled 97.5 16 PDB header:translation
Chain: A: PDB Molecule:gtp-binding protein lepa;
PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus
68c3lx8A_



not modelled 97.5 24 PDB header:metal transport
Chain: A: PDB Molecule:ferrous iron uptake transporter protein b;
PDBTitle: crystal structure of gdp-bound nfeob from s. thermophilus
69c3la6P_



not modelled 97.5 12 PDB header:transferase
Chain: P: PDB Molecule:tyrosine-protein kinase wzc;
PDBTitle: octameric kinase domain of the e. coli tyrosine kinase wzc with bound2 adp
70c1lnzA_



not modelled 97.4 17 PDB header:cell cycle
Chain: A: PDB Molecule:spo0b-associated gtp-binding protein;
PDBTitle: structure of the obg gtp-binding protein
71c1mj1A_



not modelled 97.4 18 PDB header:ribosome
Chain: A: PDB Molecule:elongation factor tu;
PDBTitle: fitting the ternary complex of ef-tu/trna/gtp and ribosomal proteins2 into a 13 a cryo-em map of the coli 70s ribosome
72c2qagC_



not modelled 97.4 16 PDB header:cell cycle, structural protein
Chain: C: PDB Molecule:septin-7;
PDBTitle: crystal structure of human septin trimer 2/6/7
73d1p9ra_



not modelled 97.4 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
74c3cioA_



not modelled 97.4 13 PDB header:signaling protein, transferase
Chain: A: PDB Molecule:tyrosine-protein kinase etk;
PDBTitle: the kinase domain of escherichia coli tyrosine kinase etk
75d1rkba_



not modelled 97.4 38 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
76c2xtpA_



not modelled 97.4 15 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of nucleotide-free human gimap2, amino2 acid residues 1-260
77c1kk3A_



not modelled 97.4 16 PDB header:translation
Chain: A: PDB Molecule:eif2gamma;
PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+
78c2elfA_



not modelled 97.4 20 PDB header:translation
Chain: A: PDB Molecule:protein translation elongation factor 1a;
PDBTitle: crystal structure of the selb-like elongation factor ef-pyl2 from methanosarcina mazei
79d1s96a_



not modelled 97.4 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
80c1skqB_



not modelled 97.3 24 PDB header:translation
Chain: B: PDB Molecule:elongation factor 1-alpha;
PDBTitle: the crystal structure of sulfolobus solfataricus elongation2 factor 1-alpha in complex with magnesium and gdp
81c3t5dC_



not modelled 97.3 14 PDB header:signaling protein
Chain: C: PDB Molecule:septin-7;
PDBTitle: crystal structure of septin 7 in complex with gdp
82c1zo1I_



not modelled 97.3 21 PDB header:translation/rna
Chain: I: PDB Molecule:translation initiation factor 2;
PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex
83c2qorA_



not modelled 97.3 16 PDB header:transferase
Chain: A: PDB Molecule:guanylate kinase;
PDBTitle: crystal structure of plasmodium vivax guanylate kinase
84c3jvvA_



not modelled 97.3 20 PDB header:atp binding protein
Chain: A: PDB Molecule:twitching mobility protein;
PDBTitle: crystal structure of p. aeruginosa pilt with bound amp-pcp
85c2wjyA_



not modelled 97.3 20 PDB header:hydrolase
Chain: A: PDB Molecule:regulator of nonsense transcripts 1;
PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form
86c2qagB_



not modelled 97.2 25 PDB header:cell cycle, structural protein
Chain: B: PDB Molecule:septin-6;
PDBTitle: crystal structure of human septin trimer 2/6/7
87d1f60a3



not modelled 97.2 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
88c2vedA_



not modelled 97.2 15 PDB header:transferase
Chain: A: PDB Molecule:membrane protein capa1, protein tyrosine kinase;
PDBTitle: crystal structure of the chimerical mutant capabk55m2 protein
89c2j3eA_



not modelled 97.2 16 PDB header:protein transport
Chain: A: PDB Molecule:t7i23.11 protein;
PDBTitle: dimerization is important for the gtpase activity of2 chloroplast translocon components attoc33 and pstoc159
90c3tr0A_



not modelled 97.2 15 PDB header:transferase
Chain: A: PDB Molecule:guanylate kinase;
PDBTitle: structure of guanylate kinase (gmk) from coxiella burnetii
91d1nrjb_



not modelled 97.2 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
92d1egaa1



not modelled 97.2 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
93c3tr5C_



not modelled 97.2 18 PDB header:translation
Chain: C: PDB Molecule:peptide chain release factor 3;
PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii
94c3a1vB_



not modelled 97.2 20 PDB header:transport protein
Chain: B: PDB Molecule:iron(ii) transport protein b;
PDBTitle: crystal structue of the cytosolic domain of t. maritima feob2 iron iransporter in apo form
95c2xexA_



not modelled 97.2 22 PDB header:translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g
96d2afhe1



not modelled 97.2 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
97d2c78a3



not modelled 97.2 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
98c3lxxA_



not modelled 97.2 18 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 4;
PDBTitle: crystal structure of human gtpase imap family member 4
99d1ihua1



not modelled 97.1 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
100d1h65a_



not modelled 97.1 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
101c2bwjC_



not modelled 97.1 19 PDB header:transferase
Chain: C: PDB Molecule:adenylate kinase 5;
PDBTitle: structure of adenylate kinase 5
102c3lxwA_



not modelled 97.1 22 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 1;
PDBTitle: crystal structure of human gtpase imap family member 1
103c1r5nA_



not modelled 97.1 19 PDB header:translation
Chain: A: PDB Molecule:eukaryotic peptide chain release factor gtp-
PDBTitle: crystal structure analysis of sup35 complexed with gdp
104c1jalA_



not modelled 97.1 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ychf protein;
PDBTitle: ychf protein (hi0393)
105c2vyeA_



not modelled 97.1 15 PDB header:hydrolase
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: crystal structure of the dnac-ssdna complex
106c2ja1A_



not modelled 97.1 15 PDB header:transferase
Chain: A: PDB Molecule:thymidine kinase;
PDBTitle: thymidine kinase from b. cereus with ttp bound as phosphate2 donor.
107d1g7sa4



not modelled 97.1 37 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
108c1ly1A_



not modelled 97.1 28 PDB header:transferase
Chain: A: PDB Molecule:polynucleotide kinase;
PDBTitle: structure and mechanism of t4 polynucleotide kinase
109d1ly1a_



not modelled 97.1 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
110c1mkyA_



not modelled 97.1 20 PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains
111d1mo6a1



not modelled 97.0 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
112c2dy1A_



not modelled 97.0 20 PDB header:signaling protein, translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of ef-g-2 from thermus thermophilus
113d1qhxa_



not modelled 97.0 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Chloramphenicol phosphotransferase
114d1n0ua2



not modelled 97.0 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
115c3io3A_



not modelled 97.0 10 PDB header:chaperone
Chain: A: PDB Molecule:deha2d07832p;
PDBTitle: get3 with adp from d. hansenii in closed form
116d3adka_



not modelled 97.0 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
117d1ihua2



not modelled 97.0 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
118d1jnya3



not modelled 97.0 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
119c2qagA_



not modelled 97.0 17 PDB header:cell cycle, structural protein
Chain: A: PDB Molecule:septin-2;
PDBTitle: crystal structure of human septin trimer 2/6/7
120c3ch4B_



not modelled 97.0 16 PDB header:transferase
Chain: B: PDB Molecule:phosphomevalonate kinase;
PDBTitle: the crystal structure of human phosphomavelonate kinase at2 1.8 a resolution

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0