Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP27828
DateThu Jan 5 11:44:04 GMT 2012
Unique Job IDfbd6eff867298048

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1f6da_
Top template information
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
Confidence and coverage
Confidence:100.0% Coverage:100%
376 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKVLTVFGTRPEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNI
Secondary structure 
SS confidence 
Disorder  ?
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  MQPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGL
Secondary structure 
SS confidence 
Disorder 
?????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  RTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWV
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  RDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQ
Secondary structure 
SS confidence 
Disorder 
?????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  IVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  GKPVLVMRDTTERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQ
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........370......
Sequence  ACSRILEALKNNRISL
Secondary structure 
SS confidence 
Disorder 
??????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1f6d chain A

3D model

Region: 1 - 376
Aligned: 376
Modelled: 375
Confidence: 100.0%
Identity: 97%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: UDP-N-acetylglucosamine 2-epimerase

Phyre2

PDB 3dzc chain A

3D model

Region: 1 - 371
Aligned: 371
Modelled: 371
Confidence: 100.0%
Identity: 67%
PDB header:isomerase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae.

Phyre2

PDB 1v4v chain A

3D model

Region: 2 - 373
Aligned: 359
Modelled: 359
Confidence: 100.0%
Identity: 42%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: UDP-N-acetylglucosamine 2-epimerase

Phyre2

PDB 3ot5 chain D

3D model

Region: 1 - 373
Aligned: 358
Modelled: 373
Confidence: 100.0%
Identity: 50%
PDB header:isomerase
Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes

Phyre2

PDB 1o6c chain A

3D model

Region: 1 - 373
Aligned: 343
Modelled: 351
Confidence: 100.0%
Identity: 51%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: UDP-N-acetylglucosamine 2-epimerase

Phyre2

PDB 3c4v chain B

3D model

Region: 1 - 371
Aligned: 361
Modelled: 371
Confidence: 100.0%
Identity: 14%
PDB header:transferase
Chain: B: PDB Molecule:predicted glycosyltransferases;
PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p.

Phyre2

PDB 3oka chain A

3D model

Region: 2 - 371
Aligned: 351
Modelled: 362
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol
PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form)

Phyre2

PDB 3s29 chain C

3D model

Region: 2 - 370
Aligned: 367
Modelled: 368
Confidence: 100.0%
Identity: 12%
PDB header:transferase
Chain: C: PDB Molecule:sucrose synthase 1;
PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications.

Phyre2

PDB 2jjm chain H

3D model

Region: 1 - 371
Aligned: 343
Modelled: 357
Confidence: 100.0%
Identity: 14%
PDB header:transferase
Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein;
PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558.

Phyre2

PDB 2r60 chain A

3D model

Region: 1 - 373
Aligned: 371
Modelled: 373
Confidence: 100.0%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:glycosyl transferase, group 1;
PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii

Phyre2

PDB 2gej chain A

3D model

Region: 1 - 371
Aligned: 334
Modelled: 339
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima);
PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man

Phyre2

PDB 2bis chain A domain 1

3D model

Region: 1 - 371
Aligned: 367
Modelled: 370
Confidence: 100.0%
Identity: 17%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Glycosyl transferases group 1

Phyre2

PDB 3oy2 chain A

3D model

Region: 1 - 371
Aligned: 346
Modelled: 356
Confidence: 100.0%
Identity: 13%
PDB header:viral protein,transferase
Chain: A: PDB Molecule:glycosyltransferase b736l;
PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a

Phyre2

PDB 2xmp chain B

3D model

Region: 1 - 376
Aligned: 356
Modelled: 374
Confidence: 100.0%
Identity: 15%
PDB header:sugar binding protein
Chain: B: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp

Phyre2

PDB 2qzs chain A

3D model

Region: 1 - 373
Aligned: 370
Modelled: 373
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:glycogen synthase;
PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb)

Phyre2

PDB 2iw1 chain A domain 1

3D model

Region: 3 - 370
Aligned: 350
Modelled: 368
Confidence: 100.0%
Identity: 13%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Glycosyl transferases group 1

Phyre2

PDB 2x6r chain A

3D model

Region: 1 - 376
Aligned: 356
Modelled: 371
Confidence: 100.0%
Identity: 16%
PDB header:isomerase
Chain: A: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose

Phyre2

PDB 1uqu chain B

3D model

Region: 2 - 376
Aligned: 372
Modelled: 375
Confidence: 100.0%
Identity: 12%
PDB header:synthase
Chain: B: PDB Molecule:alpha, alpha-trehalose-phosphate synthase;
PDBTitle: trehalose-6-phosphate from e. coli bound with udp-glucose.

Phyre2

PDB 1rzu chain A

3D model

Region: 1 - 373
Aligned: 372
Modelled: 373
Confidence: 100.0%
Identity: 16%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Glycosyl transferases group 1

Phyre2

PDB 1uqt chain A

3D model

Region: 2 - 373
Aligned: 369
Modelled: 372
Confidence: 99.9%
Identity: 14%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Trehalose-6-phosphate synthase, OtsA

Phyre2
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d1f6da_
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c3dzcA_
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d1v4va_
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c3ot5D_
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d1o6ca_
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c3c4vB_
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c3okaA_
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c3s29C_
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c2jjmH_
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c2r60A_
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c2gejA_
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d2bisa1
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c3oy2A_
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c2xmpB_
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c2qzsA_
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d2iw1a1
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c2x6rA_
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c1uquB_
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d1rzua_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1f6da_
100.0 97 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
2c3dzcA_
100.0 67 PDB header:isomerase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae.
3d1v4va_
100.0 42 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
4c3ot5D_
100.0 50 PDB header:isomerase
Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes
5d1o6ca_
100.0 51 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
6c3c4vB_
100.0 14 PDB header:transferase
Chain: B: PDB Molecule:predicted glycosyltransferases;
PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p.
7c3okaA_
100.0 15 PDB header:transferase
Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol
PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form)
8c3s29C_
100.0 12 PDB header:transferase
Chain: C: PDB Molecule:sucrose synthase 1;
PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications.
9c2jjmH_
100.0 14 PDB header:transferase
Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein;
PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558.
10c2r60A_
100.0 14 PDB header:transferase
Chain: A: PDB Molecule:glycosyl transferase, group 1;
PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii
11c2gejA_
100.0 16 PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima);
PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man
12d2bisa1
100.0 17 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
13c3oy2A_
100.0 13 PDB header:viral protein,transferase
Chain: A: PDB Molecule:glycosyltransferase b736l;
PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a
14c2xmpB_
100.0 15 PDB header:sugar binding protein
Chain: B: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp
15c2qzsA_
100.0 16 PDB header:transferase
Chain: A: PDB Molecule:glycogen synthase;
PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb)
16d2iw1a1
100.0 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
17c2x6rA_
100.0 16 PDB header:isomerase
Chain: A: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose
18c1uquB_
100.0 12 PDB header:synthase
Chain: B: PDB Molecule:alpha, alpha-trehalose-phosphate synthase;
PDBTitle: trehalose-6-phosphate from e. coli bound with udp-glucose.
19d1rzua_
100.0 16 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
20d1uqta_
99.9 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Trehalose-6-phosphate synthase, OtsA
21c2x0dA_
not modelled 99.9 12 PDB header:transferase
Chain: A: PDB Molecule:wsaf;
PDBTitle: apo structure of wsaf
22c3iaaB_
not modelled 99.9 13 PDB header:transferase
Chain: B: PDB Molecule:calg2;
PDBTitle: crystal structure of calg2, calicheamicin glycosyltransferase, tdp2 bound form
23c3othB_
not modelled 99.9 17 PDB header:transferase/antibiotic
Chain: B: PDB Molecule:calg1;
PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form
24d1f0ka_
not modelled 99.9 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Peptidoglycan biosynthesis glycosyltransferase MurG
25c2p6pB_
not modelled 99.9 14 PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase;
PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2
26c3ia7A_
not modelled 99.9 12 PDB header:transferase
Chain: A: PDB Molecule:calg4;
PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase
27c2iyfA_
not modelled 99.9 11 PDB header:transferase
Chain: A: PDB Molecule:oleandomycin glycosyltransferase;
PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering
28c3rhzB_
not modelled 99.9 15 PDB header:transferase
Chain: B: PDB Molecule:nucleotide sugar synthetase-like protein;
PDBTitle: structure and functional analysis of a new subfamily of2 glycosyltransferases required for glycosylation of serine-rich3 streptococcal adhesions
29c2xcuC_
not modelled 99.9 16 PDB header:transferase
Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase;
PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp
30c2iv3B_
not modelled 99.9 15 PDB header:transferase
Chain: B: PDB Molecule:glycosyltransferase;
PDBTitle: crystal structure of avigt4, a glycosyltransferase involved2 in avilamycin a biosynthesis
31c2q6vA_
not modelled 99.9 10 PDB header:transferase
Chain: A: PDB Molecule:glucuronosyltransferase gumk;
PDBTitle: crystal structure of gumk in complex with udp
32c2iyaB_
not modelled 99.9 10 PDB header:transferase
Chain: B: PDB Molecule:oleandomycin glycosyltransferase;
PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering
33c3o3cD_
not modelled 99.9 11 PDB header:transferase
Chain: D: PDB Molecule:glycogen [starch] synthase isoform 2;
PDBTitle: glycogen synthase basal state udp complex
34c3nb0A_
not modelled 99.9 11 PDB header:transferase
Chain: A: PDB Molecule:glycogen [starch] synthase isoform 2;
PDBTitle: glucose-6-phosphate activated form of yeast glycogen synthase
35c3d0qB_
not modelled 99.9 11 PDB header:transferase
Chain: B: PDB Molecule:protein calg3;
PDBTitle: crystal structure of calg3 from micromonospora echinospora determined2 in space group i222
36d1pn3a_
not modelled 99.8 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Gtf glycosyltransferase
37d1iira_
not modelled 99.8 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Gtf glycosyltransferase
38d1rrva_
not modelled 99.8 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Gtf glycosyltransferase
39d2f9fa1
not modelled 99.8 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
40c2vsnB_
not modelled 99.7 12 PDB header:transferase
Chain: B: PDB Molecule:xcogt;
PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation
41c3qhpB_
not modelled 99.7 10 PDB header:transferase
Chain: B: PDB Molecule:type 1 capsular polysaccharide biosynthesis protein j
PDBTitle: crystal structure of the catalytic domain of cholesterol-alpha-2 glucosyltransferase from helicobacter pylori
42d2acva1
not modelled 99.6 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
43d2bfwa1
not modelled 99.6 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
44c3hbjA_
not modelled 99.6 10 PDB header:transferase
Chain: A: PDB Molecule:flavonoid 3-o-glucosyltransferase;
PDBTitle: structure of ugt78g1 complexed with udp
45c3pe3D_
not modelled 99.6 12 PDB header:transferase
Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n-
PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate
46d2pq6a1
not modelled 99.3 9 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
47d2vcha1
not modelled 99.3 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
48d2c1xa1
not modelled 99.3 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
49c3hbmA_
not modelled 99.1 12 PDB header:hydrolase
Chain: A: PDB Molecule:udp-sugar hydrolase;
PDBTitle: crystal structure of pseg from campylobacter jejuni
50c3l7mC_
not modelled 98.8 15 PDB header:structural protein
Chain: C: PDB Molecule:teichoic acid biosynthesis protein f;
PDBTitle: structure of the wall teichoic acid polymerase tagf, h548a
51c3q3hA_
not modelled 98.8 10 PDB header:transferase
Chain: A: PDB Molecule:hmw1c-like glycosyltransferase;
PDBTitle: crystal structure of the actinobacillus pleuropneumoniae hmw1c2 glycosyltransferase in complex with udp-glc
52d1pswa_
not modelled 98.7 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:ADP-heptose LPS heptosyltransferase II
53c2h1fB_
not modelled 98.6 11 PDB header:transferase
Chain: B: PDB Molecule:lipopolysaccharide heptosyltransferase-1;
PDBTitle: e. coli heptosyltransferase waac with adp
54c2o6lA_
not modelled 98.5 13 PDB header:transferase
Chain: A: PDB Molecule:udp-glucuronosyltransferase 2b7;
PDBTitle: crystal structure of the udp-glucuronic acid binding domain2 of the human drug metabolizing udp-glucuronosyltransferase3 2b7
55c3tovB_
not modelled 98.2 14 PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase family 9;
PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008
56c2jzcA_
not modelled 96.6 15 PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine transferase subunit
PDBTitle: nmr solution structure of alg13: the sugar donor subunit of2 a yeast n-acetylglucosamine transferase. northeast3 structural genomics consortium target yg1
57c3ddsB_
not modelled 96.3 11 PDB header:transferase
Chain: B: PDB Molecule:glycogen phosphorylase, liver form;
PDBTitle: crystal structure of glycogen phosphorylase complexed with an2 anthranilimide based inhibitor gsk261
58d2gj4a1
not modelled 96.0 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
59d2atia1
not modelled 95.9 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
60c2ixdB_
not modelled 94.9 18 PDB header:hydrolase
Chain: B: PDB Molecule:lmbe-related protein;
PDBTitle: crystal structure of the putative deacetylase bc1534 from2 bacilus cereus
61c2c4mA_
not modelled 94.8 12 PDB header:transferase
Chain: A: PDB Molecule:glycogen phosphorylase;
PDBTitle: starch phosphorylase: structural studies explain oxyanion-2 dependent kinetic stability and regulatory control.
62d1uana_
not modelled 94.4 13 Fold:LmbE-like
Superfamily:LmbE-like
Family:LmbE-like
63c3kcqA_
not modelled 94.1 13 PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 anaplasma phagocytophilum
64d1l5wa_
not modelled 93.3 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
65c1s3iA_
not modelled 93.0 10 PDB header:hydrolase, oxidoreductase
Chain: A: PDB Molecule:10-formyltetrahydrofolate dehydrogenase;
PDBTitle: crystal structure of the n terminal hydrolase domain of 10-2 formyltetrahydrofolate dehydrogenase
66d1s3ia2
not modelled 92.6 9 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
67c3tqrA_
not modelled 92.5 10 PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: structure of the phosphoribosylglycinamide formyltransferase (purn) in2 complex with ches from coxiella burnetii
68d1j9ja_
not modelled 91.2 9 Fold:SurE-like
Superfamily:SurE-like
Family:SurE-like
69c2v4oB_
not modelled 91.0 18 PDB header:hydrolase
Chain: B: PDB Molecule:multifunctional protein sur e;
PDBTitle: crystal structure of salmonella typhimurium sure at 2.752 angstrom resolution in monoclinic form
70c2ywrA_
not modelled 90.8 12 PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: crystal structure of gar transformylase from aquifex2 aeolicus
71d1ygpa_
not modelled 90.7 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
72c3tqqA_
not modelled 90.6 19 PDB header:transferase
Chain: A: PDB Molecule:methionyl-trna formyltransferase;
PDBTitle: structure of the methionyl-trna formyltransferase (fmt) from coxiella2 burnetii
73c1yrwA_
not modelled 90.0 15 PDB header:transferase
Chain: A: PDB Molecule:protein arna;
PDBTitle: crystal structure of e.coli arna transformylase domain
74c2iz6A_
not modelled 90.0 18 PDB header:metal transport
Chain: A: PDB Molecule:molybdenum cofactor carrier protein;
PDBTitle: structure of the chlamydomonas rheinhardtii moco carrier2 protein
75c1fmtA_
not modelled 90.0 15 PDB header:formyltransferase
Chain: A: PDB Molecule:methionyl-trna fmet formyltransferase;
PDBTitle: methionyl-trnafmet formyltransferase from escherichia coli
76c3q0iA_
not modelled 88.5 17 PDB header:transferase
Chain: A: PDB Molecule:methionyl-trna formyltransferase;
PDBTitle: methionyl-trna formyltransferase from vibrio cholerae
77d1udca_
not modelled 88.3 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
78d1jkxa_
not modelled 88.3 11 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
79c3icpA_
not modelled 88.3 26 PDB header:isomerase
Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase;
PDBTitle: crystal structure of udp-galactose 4-epimerase
80d1fjha_
not modelled 88.1 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
81c1gsoA_
not modelled 88.1 17 PDB header:ligase
Chain: A: PDB Molecule:protein (glycinamide ribonucleotide synthetase);
PDBTitle: glycinamide ribonucleotide synthetase (gar-syn) from e.2 coli.
82c1z7eC_
not modelled 88.0 16 PDB header:hydrolase
Chain: C: PDB Molecule:protein arna;
PDBTitle: crystal structure of full length arna
83c2pzlB_
not modelled 88.0 16 PDB header:sugar binding protein
Chain: B: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase;
PDBTitle: crystal structure of the bordetella bronchiseptica enzyme2 wbmg in complex with nad and udp
84c3m2pD_
not modelled 87.6 16 PDB header:isomerase
Chain: D: PDB Molecule:udp-n-acetylglucosamine 4-epimerase;
PDBTitle: the crystal structure of udp-n-acetylglucosamine 4-epimerase2 from bacillus cereus
85c2pk3B_
not modelled 87.4 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:gdp-6-deoxy-d-lyxo-4-hexulose reductase;
PDBTitle: crystal structure of a gdp-4-keto-6-deoxy-d-mannose reductase
86c3fmfA_
not modelled 87.2 33 PDB header:ligase
Chain: A: PDB Molecule:dethiobiotin synthetase;
PDBTitle: crystal structure of mycobacterium tuberculosis dethiobiotin2 synthetase complexed with 7,8 diaminopelargonic acid carbamate
87d1gy8a_
not modelled 86.7 25 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
88c3l77A_
not modelled 86.6 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:short-chain alcohol dehydrogenase;
PDBTitle: x-ray structure alcohol dehydrogenase from archaeon thermococcus2 sibiricus complexed with 5-hydroxy-nadp
89d1ydga_
not modelled 86.5 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
90c2x4gA_
not modelled 86.4 13 PDB header:isomerase
Chain: A: PDB Molecule:nucleoside-diphosphate-sugar epimerase;
PDBTitle: crystal structure of pa4631, a nucleoside-diphosphate-sugar2 epimerase from pseudomonas aeruginosa
91d1wmaa1
not modelled 86.3 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
92d2bw0a2
not modelled 86.1 13 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
93d1fmta2
not modelled 86.0 13 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
94c2p5uC_
not modelled 85.9 26 PDB header:isomerase
Chain: C: PDB Molecule:udp-glucose 4-epimerase;
PDBTitle: crystal structure of thermus thermophilus hb8 udp-glucose 4-2 epimerase complex with nad
95c2xd4A_
not modelled 85.5 13 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase;
PDBTitle: nucleotide-bound structures of bacillus subtilis glycinamide2 ribonucleotide synthetase
96d2blna2
not modelled 85.0 15 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
97c3lp8A_
not modelled 84.7 13 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylamine-glycine ligase;
PDBTitle: crystal structure of phosphoribosylamine-glycine ligase from2 ehrlichia chaffeensis
98d2c5aa1
not modelled 84.5 8 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
99c1gshA_
not modelled 84.2 8 PDB header:glutathione biosynthesis ligase
Chain: A: PDB Molecule:glutathione biosynthetic ligase;
PDBTitle: structure of escherichia coli glutathione synthetase at ph 7.5
100c3dcjA_
not modelled 83.7 12 PDB header:transferase
Chain: A: PDB Molecule:probable 5'-phosphoribosylglycinamide
PDBTitle: crystal structure of glycinamide formyltransferase (purn)2 from mycobacterium tuberculosis in complex with 5-methyl-5,3 6,7,8-tetrahydrofolic acid derivative
101c2ggsB_
not modelled 83.0 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:273aa long hypothetical dtdp-4-dehydrorhamnose
PDBTitle: crystal structure of hypothetical dtdp-4-dehydrorhamnose2 reductase from sulfolobus tokodaii
102d1kewa_
not modelled 82.9 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
103d1vl0a_
not modelled 82.6 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
104c2yyaB_
not modelled 82.4 11 PDB header:ligase
Chain: B: PDB Molecule:phosphoribosylamine--glycine ligase;
PDBTitle: crystal structure of gar synthetase from aquifex aeolicus
105c2qhxB_
not modelled 82.3 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:pteridine reductase 1;
PDBTitle: structure of pteridine reductase from leishmania major2 complexed with a ligand
106d1e7wa_
not modelled 82.1 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
107d2blla1
not modelled 82.1 19 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
108c2hunB_
not modelled 82.0 19 PDB header:lyase
Chain: B: PDB Molecule:336aa long hypothetical dtdp-glucose 4,6-dehydratase;
PDBTitle: crystal structure of hypothetical protein ph0414 from pyrococcus2 horikoshii ot3
109d1jaya_
not modelled 81.9 30 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
110d1n2sa_
not modelled 81.7 20 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
111c3i4fD_
not modelled 81.6 9 PDB header:oxidoreductase
Chain: D: PDB Molecule:3-oxoacyl-[acyl-carrier protein] reductase;
PDBTitle: structure of putative 3-oxoacyl-reductase from bacillus thuringiensis
112c3gpiA_
not modelled 81.5 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase;
PDBTitle: structure of putative nad-dependent epimerase/dehydratase2 from methylobacillus flagellatus
113c2pvpB_
not modelled 80.5 21 PDB header:ligase
Chain: B: PDB Molecule:d-alanine-d-alanine ligase;
PDBTitle: crystal structure of d-alanine-d-alanine ligase from helicobacter2 pylori
114d1rtta_
not modelled 79.7 15 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
115c2ys6A_
not modelled 78.1 11 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylglycinamide synthetase;
PDBTitle: crystal structure of gar synthetase from geobacillus kaustophilus
116c2ejbA_
not modelled 77.5 17 PDB header:lyase
Chain: A: PDB Molecule:probable aromatic acid decarboxylase;
PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus
117c2e6gI_
not modelled 76.3 11 PDB header:hydrolase
Chain: I: PDB Molecule:5'-nucleotidase sure;
PDBTitle: crystal structure of the stationary phase survival protein sure from2 thermus thermophilus hb8 in complex with phosphate
118d1q74a_
not modelled 76.2 15 Fold:LmbE-like
Superfamily:LmbE-like
Family:LmbE-like
119c1zggA_
not modelled 76.2 19 PDB header:hydrolase
Chain: A: PDB Molecule:putative low molecular weight protein-tyrosine-
PDBTitle: solution structure of a low molecular weight protein2 tyrosine phosphatase from bacillus subtilis
120d1r6da_
not modelled 75.1 22 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0