Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP24173
DateThu Jan 5 11:40:47 GMT 2012
Unique Job IDf856c782cd83b95c

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3tovB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase family 9;
PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008
Confidence and coverage
Confidence:100.0% Coverage: 97%
308 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERVIPVAIR
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   .........70.........80.........90.........100.........110.........120
Sequence  RWRKAWFSAPIKAERKAFREALQAENYDAVIDAQGLVKSAALVTRLAHGVKHGMDWQTAR
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Disorder  ??????????

















































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   .........130.........140.........150.........160.........170.........180
Sequence  EPLASLFYNRKHHIAKQQHAVERTRELFAKSLGYSKPQTQGDYAIAQHFLTNLPTDAGEY
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   .........190.........200.........210.........220.........230.........240
Sequence  AVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLP
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   .........250.........260.........270.........280.........290.........300
Sequence  KMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNITVYGPTDPGLIGGYGKNQMVCRAP
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   .........310.........
Sequence  RENLINLNSQAVLEKLSSL
Secondary structure 









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????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3tov chain B

3D model

Region: 2 - 319
Aligned: 308
Modelled: 318
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase family 9;
PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008

Phyre2

PDB 2h1f chain B

3D model

Region: 1 - 318
Aligned: 295
Modelled: 318
Confidence: 100.0%
Identity: 92%
PDB header:transferase
Chain: B: PDB Molecule:lipopolysaccharide heptosyltransferase-1;
PDBTitle: e. coli heptosyltransferase waac with adp

Phyre2

PDB 1psw chain A

3D model

Region: 1 - 319
Aligned: 302
Modelled: 295
Confidence: 100.0%
Identity: 22%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: ADP-heptose LPS heptosyltransferase II

Phyre2

PDB 3ot5 chain D

3D model

Region: 1 - 319
Aligned: 304
Modelled: 316
Confidence: 99.4%
Identity: 12%
PDB header:isomerase
Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes

Phyre2

PDB 1v4v chain A

3D model

Region: 2 - 319
Aligned: 304
Modelled: 317
Confidence: 99.3%
Identity: 12%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: UDP-N-acetylglucosamine 2-epimerase

Phyre2

PDB 1o6c chain A

3D model

Region: 1 - 319
Aligned: 298
Modelled: 312
Confidence: 99.1%
Identity: 10%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: UDP-N-acetylglucosamine 2-epimerase

Phyre2

PDB 1f6d chain A

3D model

Region: 1 - 319
Aligned: 306
Modelled: 313
Confidence: 99.0%
Identity: 14%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: UDP-N-acetylglucosamine 2-epimerase

Phyre2

PDB 2gej chain A

3D model

Region: 1 - 319
Aligned: 294
Modelled: 306
Confidence: 98.8%
Identity: 12%
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima);
PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man

Phyre2

PDB 1pn3 chain A

3D model

Region: 1 - 319
Aligned: 300
Modelled: 319
Confidence: 98.8%
Identity: 17%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Gtf glycosyltransferase

Phyre2

PDB 3dzc chain A

3D model

Region: 1 - 319
Aligned: 307
Modelled: 318
Confidence: 98.8%
Identity: 13%
PDB header:isomerase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae.

Phyre2

PDB 3c4v chain B

3D model

Region: 1 - 319
Aligned: 307
Modelled: 317
Confidence: 98.8%
Identity: 13%
PDB header:transferase
Chain: B: PDB Molecule:predicted glycosyltransferases;
PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p.

Phyre2

PDB 3iaa chain B

3D model

Region: 2 - 319
Aligned: 300
Modelled: 315
Confidence: 98.7%
Identity: 16%
PDB header:transferase
Chain: B: PDB Molecule:calg2;
PDBTitle: crystal structure of calg2, calicheamicin glycosyltransferase, tdp2 bound form

Phyre2

PDB 1f0k chain A

3D model

Region: 2 - 319
Aligned: 303
Modelled: 312
Confidence: 98.7%
Identity: 13%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Peptidoglycan biosynthesis glycosyltransferase MurG

Phyre2

PDB 1rrv chain A

3D model

Region: 1 - 319
Aligned: 305
Modelled: 317
Confidence: 98.6%
Identity: 11%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Gtf glycosyltransferase

Phyre2

PDB 3oth chain B

3D model

Region: 1 - 319
Aligned: 301
Modelled: 301
Confidence: 98.6%
Identity: 15%
PDB header:transferase/antibiotic
Chain: B: PDB Molecule:calg1;
PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form

Phyre2

PDB 2p6p chain B

3D model

Region: 1 - 319
Aligned: 284
Modelled: 306
Confidence: 98.6%
Identity: 14%
PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase;
PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2

Phyre2

PDB 3oy2 chain A

3D model

Region: 1 - 319
Aligned: 308
Modelled: 318
Confidence: 98.6%
Identity: 9%
PDB header:viral protein,transferase
Chain: A: PDB Molecule:glycosyltransferase b736l;
PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a

Phyre2

PDB 2jjm chain H

3D model

Region: 1 - 319
Aligned: 297
Modelled: 319
Confidence: 98.5%
Identity: 11%
PDB header:transferase
Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein;
PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558.

Phyre2

PDB 3hbm chain A

3D model

Region: 1 - 278
Aligned: 242
Modelled: 252
Confidence: 98.5%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:udp-sugar hydrolase;
PDBTitle: crystal structure of pseg from campylobacter jejuni

Phyre2

PDB 1iir chain A

3D model

Region: 1 - 319
Aligned: 297
Modelled: 319
Confidence: 98.4%
Identity: 11%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Gtf glycosyltransferase

Phyre2
1

c3tovB_
2

c2h1fB_
3

d1pswa_
4

c3ot5D_
5

d1v4va_
6

d1o6ca_
7

d1f6da_
8

c2gejA_
9

d1pn3a_
10

c3dzcA_
11

c3c4vB_
12

c3iaaB_
13

d1f0ka_
14

d1rrva_
15

c3othB_
16

c2p6pB_
17

c3oy2A_
18

c2jjmH_
19

c3hbmA_
20

d1iira_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3tovB_



100.0 18 PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase family 9;
PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008
2c2h1fB_



100.0 92 PDB header:transferase
Chain: B: PDB Molecule:lipopolysaccharide heptosyltransferase-1;
PDBTitle: e. coli heptosyltransferase waac with adp
3d1pswa_



100.0 22 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:ADP-heptose LPS heptosyltransferase II
4c3ot5D_



99.4 12 PDB header:isomerase
Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes
5d1v4va_



99.3 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
6d1o6ca_



99.1 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
7d1f6da_



99.0 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
8c2gejA_



98.8 12 PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima);
PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man
9d1pn3a_



98.8 17 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Gtf glycosyltransferase
10c3dzcA_



98.8 13 PDB header:isomerase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae.
11c3c4vB_



98.8 13 PDB header:transferase
Chain: B: PDB Molecule:predicted glycosyltransferases;
PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p.
12c3iaaB_



98.7 16 PDB header:transferase
Chain: B: PDB Molecule:calg2;
PDBTitle: crystal structure of calg2, calicheamicin glycosyltransferase, tdp2 bound form
13d1f0ka_



98.7 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Peptidoglycan biosynthesis glycosyltransferase MurG
14d1rrva_



98.6 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Gtf glycosyltransferase
15c3othB_



98.6 15 PDB header:transferase/antibiotic
Chain: B: PDB Molecule:calg1;
PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form
16c2p6pB_



98.6 14 PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase;
PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2
17c3oy2A_



98.6 9 PDB header:viral protein,transferase
Chain: A: PDB Molecule:glycosyltransferase b736l;
PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a
18c2jjmH_



98.5 11 PDB header:transferase
Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein;
PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558.
19c3hbmA_



98.5 13 PDB header:hydrolase
Chain: A: PDB Molecule:udp-sugar hydrolase;
PDBTitle: crystal structure of pseg from campylobacter jejuni
20d1iira_



98.4 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Gtf glycosyltransferase
21c2iyaB_



not modelled 98.4 12 PDB header:transferase
Chain: B: PDB Molecule:oleandomycin glycosyltransferase;
PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering
22c2xcuC_



not modelled 98.3 14 PDB header:transferase
Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase;
PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp
23c2iyfA_



not modelled 98.1 14 PDB header:transferase
Chain: A: PDB Molecule:oleandomycin glycosyltransferase;
PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering
24c3d0qB_



not modelled 98.1 16 PDB header:transferase
Chain: B: PDB Molecule:protein calg3;
PDBTitle: crystal structure of calg3 from micromonospora echinospora determined2 in space group i222
25c2x6rA_



not modelled 98.1 10 PDB header:isomerase
Chain: A: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose
26c2xmpB_



not modelled 98.0 11 PDB header:sugar binding protein
Chain: B: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp
27c2vsnB_



not modelled 98.0 11 PDB header:transferase
Chain: B: PDB Molecule:xcogt;
PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation
28d2acva1



not modelled 97.9 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
29c2r60A_



not modelled 97.8 11 PDB header:transferase
Chain: A: PDB Molecule:glycosyl transferase, group 1;
PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii
30c3ia7A_



not modelled 97.8 16 PDB header:transferase
Chain: A: PDB Molecule:calg4;
PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase
31c2qzsA_



not modelled 97.8 15 PDB header:transferase
Chain: A: PDB Molecule:glycogen synthase;
PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb)
32d1rzua_



not modelled 97.7 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
33c3okaA_



not modelled 97.6 13 PDB header:transferase
Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol
PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form)
34c3hbjA_



not modelled 97.4 10 PDB header:transferase
Chain: A: PDB Molecule:flavonoid 3-o-glucosyltransferase;
PDBTitle: structure of ugt78g1 complexed with udp
35d2bisa1



not modelled 97.3 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
36c3pe3D_



not modelled 97.0 11 PDB header:transferase
Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n-
PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate
37c2x0dA_



not modelled 97.0 16 PDB header:transferase
Chain: A: PDB Molecule:wsaf;
PDBTitle: apo structure of wsaf
38d2c1xa1



not modelled 96.8 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
39d2iw1a1



not modelled 96.6 9 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
40d2f9fa1



not modelled 95.9 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
41c2iv3B_



not modelled 95.6 17 PDB header:transferase
Chain: B: PDB Molecule:glycosyltransferase;
PDBTitle: crystal structure of avigt4, a glycosyltransferase involved2 in avilamycin a biosynthesis
42c3qhpB_



not modelled 95.6 11 PDB header:transferase
Chain: B: PDB Molecule:type 1 capsular polysaccharide biosynthesis protein j
PDBTitle: crystal structure of the catalytic domain of cholesterol-alpha-2 glucosyltransferase from helicobacter pylori
43d2pq6a1



not modelled 95.1 9 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
44c3q3hA_



not modelled 95.0 9 PDB header:transferase
Chain: A: PDB Molecule:hmw1c-like glycosyltransferase;
PDBTitle: crystal structure of the actinobacillus pleuropneumoniae hmw1c2 glycosyltransferase in complex with udp-glc
45c2o6lA_



not modelled 94.7 10 PDB header:transferase
Chain: A: PDB Molecule:udp-glucuronosyltransferase 2b7;
PDBTitle: crystal structure of the udp-glucuronic acid binding domain2 of the human drug metabolizing udp-glucuronosyltransferase3 2b7
46c2q6vA_



not modelled 94.1 9 PDB header:transferase
Chain: A: PDB Molecule:glucuronosyltransferase gumk;
PDBTitle: crystal structure of gumk in complex with udp
47c2khzB_



not modelled 93.7 26 PDB header:nuclear protein
Chain: B: PDB Molecule:c-myc-responsive protein rcl;
PDBTitle: solution structure of rcl
48d2vcha1



not modelled 93.0 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
49c3ehdA_



not modelled 91.9 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized conserved protein;
PDBTitle: crystal structure of conserved protein from enterococcus faecalis v583
50d2f62a1



not modelled 91.8 16 Fold:Flavodoxin-like
Superfamily:N-(deoxy)ribosyltransferase-like
Family:N-deoxyribosyltransferase
51d1m1na_



not modelled 89.6 10 Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
52c1uquB_



not modelled 89.0 5 PDB header:synthase
Chain: B: PDB Molecule:alpha, alpha-trehalose-phosphate synthase;
PDBTitle: trehalose-6-phosphate from e. coli bound with udp-glucose.
53c3l7mC_



not modelled 88.3 14 PDB header:structural protein
Chain: C: PDB Molecule:teichoic acid biosynthesis protein f;
PDBTitle: structure of the wall teichoic acid polymerase tagf, h548a
54d1qh8a_



not modelled 88.0 13 Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
55d1f8ya_



not modelled 88.0 11 Fold:Flavodoxin-like
Superfamily:N-(deoxy)ribosyltransferase-like
Family:N-deoxyribosyltransferase
56d1b74a1



not modelled 86.5 16 Fold:ATC-like
Superfamily:Aspartate/glutamate racemase
Family:Aspartate/glutamate racemase
57d1s2da_



not modelled 85.6 23 Fold:Flavodoxin-like
Superfamily:N-(deoxy)ribosyltransferase-like
Family:N-deoxyribosyltransferase
58c1b74A_



not modelled 82.3 16 PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase;
PDBTitle: glutamate racemase from aquifex pyrophilus
59d1cfza_



not modelled 82.2 14 Fold:Phosphorylase/hydrolase-like
Superfamily:HybD-like
Family:Hydrogenase maturating endopeptidase HybD
60d1uqta_



not modelled 79.7 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Trehalose-6-phosphate synthase, OtsA
61c2qytA_



not modelled 76.1 9 PDB header:oxidoreductase
Chain: A: PDB Molecule:2-dehydropantoate 2-reductase;
PDBTitle: crystal structure of 2-dehydropantoate 2-reductase from porphyromonas2 gingivalis w83
62c3uhjE_



not modelled 75.7 17 PDB header:oxidoreductase
Chain: E: PDB Molecule:probable glycerol dehydrogenase;
PDBTitle: crystal structure of a probable glycerol dehydrogenase from2 sinorhizobium meliloti 1021
63c3qvjB_



not modelled 74.3 16 PDB header:isomerase
Chain: B: PDB Molecule:putative hydantoin racemase;
PDBTitle: allantoin racemase from klebsiella pneumoniae
64c2jfzB_



not modelled 73.6 15 PDB header:isomerase
Chain: B: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor
65c3afoB_



not modelled 72.6 14 PDB header:transferase
Chain: B: PDB Molecule:nadh kinase pos5;
PDBTitle: crystal structure of yeast nadh kinase complexed with nadh
66c3cwcB_



not modelled 70.8 26 PDB header:transferase
Chain: B: PDB Molecule:putative glycerate kinase 2;
PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2
67d1uana_



not modelled 69.4 17 Fold:LmbE-like
Superfamily:LmbE-like
Family:LmbE-like
68d1a9xa3



not modelled 67.9 18 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
69d1ks9a2



not modelled 67.8 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
70d1m1nb_



not modelled 67.8 12 Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
71d1vl0a_



not modelled 67.7 7 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
72c3icpA_



not modelled 67.7 13 PDB header:isomerase
Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase;
PDBTitle: crystal structure of udp-galactose 4-epimerase
73c3rhzB_



not modelled 67.6 18 PDB header:transferase
Chain: B: PDB Molecule:nucleotide sugar synthetase-like protein;
PDBTitle: structure and functional analysis of a new subfamily of2 glycosyltransferases required for glycosylation of serine-rich3 streptococcal adhesions
74c2p5uC_



not modelled 66.8 18 PDB header:isomerase
Chain: C: PDB Molecule:udp-glucose 4-epimerase;
PDBTitle: crystal structure of thermus thermophilus hb8 udp-glucose 4-2 epimerase complex with nad
75d1vbga2



not modelled 66.4 11 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:Phosphohistidine domain
Family:Pyruvate phosphate dikinase, central domain
76c2e85B_



not modelled 66.4 14 PDB header:hydrolase
Chain: B: PDB Molecule:hydrogenase 3 maturation protease;
PDBTitle: crystal structure of the hydrogenase 3 maturation protease
77d1n2sa_



not modelled 64.9 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
78d1kbla2



not modelled 64.9 16 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:Phosphohistidine domain
Family:Pyruvate phosphate dikinase, central domain
79c3g17H_



not modelled 64.5 15 PDB header:structural genomics, unknown function
Chain: H: PDB Molecule:similar to 2-dehydropantoate 2-reductase;
PDBTitle: structure of putative 2-dehydropantoate 2-reductase from2 staphylococcus aureus
80c3m2pD_



not modelled 64.5 3 PDB header:isomerase
Chain: D: PDB Molecule:udp-n-acetylglucosamine 4-epimerase;
PDBTitle: the crystal structure of udp-n-acetylglucosamine 4-epimerase2 from bacillus cereus
81c2h31A_



not modelled 64.2 15 PDB header:ligase, lyase
Chain: A: PDB Molecule:multifunctional protein ade2;
PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis
82c3fhlC_



not modelled 64.2 16 PDB header:oxidoreductase
Chain: C: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase from bacteroides2 fragilis nctc 9343
83d2c5aa1



not modelled 64.2 6 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
84d1udca_



not modelled 63.0 21 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
85c3ghyA_



not modelled 61.8 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:ketopantoate reductase protein;
PDBTitle: crystal structure of a putative ketopantoate reductase from ralstonia2 solanacearum molk2
86c3gfgB_



not modelled 61.8 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:uncharacterized oxidoreductase yvaa;
PDBTitle: structure of putative oxidoreductase yvaa from bacillus subtilis in2 triclinic form
87c3lp8A_



not modelled 61.6 13 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylamine-glycine ligase;
PDBTitle: crystal structure of phosphoribosylamine-glycine ligase from2 ehrlichia chaffeensis
88c3lp6D_



not modelled 61.2 28 PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution
89d1o4va_



not modelled 61.1 20 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
90c2x4gA_



not modelled 60.9 12 PDB header:isomerase
Chain: A: PDB Molecule:nucleoside-diphosphate-sugar epimerase;
PDBTitle: crystal structure of pa4631, a nucleoside-diphosphate-sugar2 epimerase from pseudomonas aeruginosa
91c2ggsB_



not modelled 60.5 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:273aa long hypothetical dtdp-4-dehydrorhamnose
PDBTitle: crystal structure of hypothetical dtdp-4-dehydrorhamnose2 reductase from sulfolobus tokodaii
92c2ofpB_



not modelled 60.5 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:ketopantoate reductase;
PDBTitle: crystal structure of escherichia coli ketopantoate2 reductase in a ternary complex with nadp+ and pantoate
93c2ejbA_



not modelled 60.0 14 PDB header:lyase
Chain: A: PDB Molecule:probable aromatic acid decarboxylase;
PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus
94c3pu6A_



not modelled 59.7 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of an uncharacterized protein from wolinella2 succinogenes
95c3pdiG_



not modelled 59.7 12 PDB header:protein binding
Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife;
PDBTitle: precursor bound nifen
96d1miob_



not modelled 59.1 12 Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
97d2bfwa1



not modelled 59.1 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
98c3sc6F_



not modelled 58.8 8 PDB header:oxidoreductase
Chain: F: PDB Molecule:dtdp-4-dehydrorhamnose reductase;
PDBTitle: 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 reductase (rfbd) from bacillus anthracis str. ames in complex with3 nadp
99d1txga2



not modelled 58.6 21 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
100c2v4oB_



not modelled 57.3 15 PDB header:hydrolase
Chain: B: PDB Molecule:multifunctional protein sur e;
PDBTitle: crystal structure of salmonella typhimurium sure at 2.752 angstrom resolution in monoclinic form
101c3rggD_



not modelled 57.0 15 PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein;
PDBTitle: crystal structure of treponema denticola pure bound to air
102d2f1ka2



not modelled 56.4 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
103c2pzlB_



not modelled 56.3 16 PDB header:sugar binding protein
Chain: B: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase;
PDBTitle: crystal structure of the bordetella bronchiseptica enzyme2 wbmg in complex with nad and udp
104c2jzcA_



not modelled 55.8 21 PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine transferase subunit
PDBTitle: nmr solution structure of alg13: the sugar donor subunit of2 a yeast n-acetylglucosamine transferase. northeast3 structural genomics consortium target yg1
105c2xd4A_



not modelled 51.4 16 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase;
PDBTitle: nucleotide-bound structures of bacillus subtilis glycinamide2 ribonucleotide synthetase
106c3evnA_



not modelled 51.3 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of putative oxidoreductase from streptococcus2 agalactiae 2603v/r
107c2pk3B_



not modelled 51.1 11 PDB header:oxidoreductase
Chain: B: PDB Molecule:gdp-6-deoxy-d-lyxo-4-hexulose reductase;
PDBTitle: crystal structure of a gdp-4-keto-6-deoxy-d-mannose reductase
108c3kuxA_



not modelled 50.2 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: structure of the ypo2259 putative oxidoreductase from yersinia pestis
109d1mioa_



not modelled 50.0 10 Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
110d1qh8b_



not modelled 49.9 15 Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
111c1ks9A_



not modelled 48.8 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:2-dehydropantoate 2-reductase;
PDBTitle: ketopantoate reductase from escherichia coli
112c2vrcD_



not modelled 48.5 9 PDB header:oxidoreductase
Chain: D: PDB Molecule:triphenylmethane reductase;
PDBTitle: crystal structure of the citrobacter sp. triphenylmethane2 reductase complexed with nadp(h)
113c3orsD_



not modelled 47.2 15 PDB header:isomerase,biosynthetic protein
Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus
114c3pfnB_



not modelled 47.0 10 PDB header:transferase
Chain: B: PDB Molecule:nad kinase;
PDBTitle: crystal structure of human nad kinase
115c3qtpB_



not modelled 46.1 16 PDB header:lyase
Chain: B: PDB Molecule:enolase 1;
PDBTitle: crystal structure analysis of entamoeba histolytica enolase
116c2ys6A_



not modelled 45.9 21 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylglycinamide synthetase;
PDBTitle: crystal structure of gar synthetase from geobacillus kaustophilus
117d1to6a_



not modelled 45.4 17 Fold:Glycerate kinase I
Superfamily:Glycerate kinase I
Family:Glycerate kinase I
118c3pdiB_



not modelled 45.3 17 PDB header:protein binding
Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn;
PDBTitle: precursor bound nifen
119c1kblA_



not modelled 45.1 16 PDB header:transferase
Chain: A: PDB Molecule:pyruvate phosphate dikinase;
PDBTitle: pyruvate phosphate dikinase
120c1txgA_



not modelled 44.8 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase [nad(p)+];
PDBTitle: structure of glycerol-3-phosphate dehydrogenase from archaeoglobus2 fulgidus

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0