Phyre 2 Results for P24173

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Email | l.a.kelley@imperial.ac.uk
Description | P24173
Date | Thu Jan 5 11:40:47 GMT 2012
Unique Job ID | f856c782cd83b95c

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3tovB_
Top template information
PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase family 9; PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008
Confidence and coverage
Confidence: | 100.0% | Coverage: | 97%
308 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | R | V | L | I | V | K | T | S | S | M | G | D | V | L | H | T | L | P | A | L | T | D | A | Q | Q | A | I | P | G | I | K | F | D | W | V | V | E | E | G | F | A | Q | I | P | S | W | H | A | A | V | E | R | V | I | P | V | A | I | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | R | W | R | K | A | W | F | S | A | P | I | K | A | E | R | K | A | F | R | E | A | L | Q | A | E | N | Y | D | A | V | I | D | A | Q | G | L | V | K | S | A | A | L | V | T | R | L | A | H | G | V | K | H | G | M | D | W | Q | T | A | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | E | P | L | A | S | L | F | Y | N | R | K | H | H | I | A | K | Q | Q | H | A | V | E | R | T | R | E | L | F | A | K | S | L | G | Y | S | K | P | Q | T | Q | G | D | Y | A | I | A | Q | H | F | L | T | N | L | P | T | D | A | G | E | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | A | V | F | L | H | A | T | T | R | D | D | K | H | W | P | E | E | H | W | R | E | L | I | G | L | L | A | D | S | G | I | R | I | K | L | P | W | G | A | P | H | E | E | E | R | A | K | R | L | A | E | G | F | A | Y | V | E | V | L | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | K | M | S | L | E | G | V | A | R | V | L | A | G | A | K | F | V | V | S | V | D | T | G | L | S | H | L | T | A | A | L | D | R | P | N | I | T | V | Y | G | P | T | D | P | G | L | I | G | G | Y | G | K | N | Q | M | V | C | R | A | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | .
Sequence |  | R | E | N | L | I | N | L | N | S | Q | A | V | L | E | K | L | S | S | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3tovB_ |

### PDB 3tov chain B

Region: 2 - 319
Aligned: 308
Modelled: 318
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase family 9;
PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008

Phyre2
2 |
| c2h1fB_ |

### PDB 2h1f chain B

Region: 1 - 318
Aligned: 295
Modelled: 318
Confidence: 100.0%
Identity: 92%
PDB header:transferase
Chain: B: PDB Molecule:lipopolysaccharide heptosyltransferase-1;
PDBTitle: e. coli heptosyltransferase waac with adp

Phyre2
3 |
| d1pswa_ |

### PDB 1psw chain A

Region: 1 - 319
Aligned: 302
Modelled: 295
Confidence: 100.0%
Identity: 22%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: ADP-heptose LPS heptosyltransferase II

Phyre2
4 |
| c3ot5D_ |

### PDB 3ot5 chain D

Region: 1 - 319
Aligned: 304
Modelled: 316
Confidence: 99.4%
Identity: 12%
PDB header:isomerase
Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes

Phyre2
5 |
| d1v4va_ |

### PDB 1v4v chain A

Region: 2 - 319
Aligned: 304
Modelled: 317
Confidence: 99.3%
Identity: 12%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: UDP-N-acetylglucosamine 2-epimerase

Phyre2
6 |
| d1o6ca_ |

### PDB 1o6c chain A

Region: 1 - 319
Aligned: 298
Modelled: 312
Confidence: 99.1%
Identity: 10%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: UDP-N-acetylglucosamine 2-epimerase

Phyre2
7 |
| d1f6da_ |

### PDB 1f6d chain A

Region: 1 - 319
Aligned: 306
Modelled: 313
Confidence: 99.0%
Identity: 14%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: UDP-N-acetylglucosamine 2-epimerase

Phyre2
8 |
| c2gejA_ |

### PDB 2gej chain A

Region: 1 - 319
Aligned: 294
Modelled: 306
Confidence: 98.8%
Identity: 12%
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima);
PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man

Phyre2
9 |
| d1pn3a_ |

### PDB 1pn3 chain A

Region: 1 - 319
Aligned: 300
Modelled: 319
Confidence: 98.8%
Identity: 17%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Gtf glycosyltransferase

Phyre2
10 |
| c3dzcA_ |

### PDB 3dzc chain A

Region: 1 - 319
Aligned: 307
Modelled: 318
Confidence: 98.8%
Identity: 13%
PDB header:isomerase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae.

Phyre2
11 |
| c3c4vB_ |

### PDB 3c4v chain B

Region: 1 - 319
Aligned: 307
Modelled: 317
Confidence: 98.8%
Identity: 13%
PDB header:transferase
Chain: B: PDB Molecule:predicted glycosyltransferases;
PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p.

Phyre2
12 |
| c3iaaB_ |

### PDB 3iaa chain B

Region: 2 - 319
Aligned: 300
Modelled: 315
Confidence: 98.7%
Identity: 16%
PDB header:transferase
Chain: B: PDB Molecule:calg2;
PDBTitle: crystal structure of calg2, calicheamicin glycosyltransferase, tdp2 bound form

Phyre2
13 |
| d1f0ka_ |

### PDB 1f0k chain A

Region: 2 - 319
Aligned: 303
Modelled: 312
Confidence: 98.7%
Identity: 13%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Peptidoglycan biosynthesis glycosyltransferase MurG

Phyre2
14 |
| d1rrva_ |

### PDB 1rrv chain A

Region: 1 - 319
Aligned: 305
Modelled: 317
Confidence: 98.6%
Identity: 11%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Gtf glycosyltransferase

Phyre2
15 |
| c3othB_ |

### PDB 3oth chain B

Region: 1 - 319
Aligned: 301
Modelled: 301
Confidence: 98.6%
Identity: 15%
PDB header:transferase/antibiotic
Chain: B: PDB Molecule:calg1;
PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form

Phyre2
16 |
| c2p6pB_ |

### PDB 2p6p chain B

Region: 1 - 319
Aligned: 284
Modelled: 306
Confidence: 98.6%
Identity: 14%
PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase;
PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2

Phyre2
17 |
| c3oy2A_ |

### PDB 3oy2 chain A

Region: 1 - 319
Aligned: 308
Modelled: 318
Confidence: 98.6%
Identity: 9%
PDB header:viral protein,transferase
Chain: A: PDB Molecule:glycosyltransferase b736l;
PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a

Phyre2
18 |
| c2jjmH_ |

### PDB 2jjm chain H

Region: 1 - 319
Aligned: 297
Modelled: 319
Confidence: 98.5%
Identity: 11%
PDB header:transferase
Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein;
PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558.

Phyre2
19 |
| c3hbmA_ |

### PDB 3hbm chain A

Region: 1 - 278
Aligned: 242
Modelled: 252
Confidence: 98.5%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:udp-sugar hydrolase;
PDBTitle: crystal structure of pseg from campylobacter jejuni

Phyre2
20 |
| d1iira_ |

### PDB 1iir chain A

Region: 1 - 319
Aligned: 297
Modelled: 319
Confidence: 98.4%
Identity: 11%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Gtf glycosyltransferase

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3tovB_ |
|  | 100.0 | 18 | PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase family 9; PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008
2 | c2h1fB_ |
|  | 100.0 | 92 | PDB header:transferase Chain: B: PDB Molecule:lipopolysaccharide heptosyltransferase-1; PDBTitle: e. coli heptosyltransferase waac with adp
3 | d1pswa_ |
|  | 100.0 | 22 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:ADP-heptose LPS heptosyltransferase II
4 | c3ot5D_ |
|  | 99.4 | 12 | PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes
5 | d1v4va_ |
|  | 99.3 | 12 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase
6 | d1o6ca_ |
|  | 99.1 | 10 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase
7 | d1f6da_ |
|  | 99.0 | 14 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase
8 | c2gejA_ |
|  | 98.8 | 12 | PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima); PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man
9 | d1pn3a_ |
|  | 98.8 | 17 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase
10 | c3dzcA_ |
|  | 98.8 | 13 | PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae.
11 | c3c4vB_ |
|  | 98.8 | 13 | PDB header:transferase Chain: B: PDB Molecule:predicted glycosyltransferases; PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p.
12 | c3iaaB_ |
|  | 98.7 | 16 | PDB header:transferase Chain: B: PDB Molecule:calg2; PDBTitle: crystal structure of calg2, calicheamicin glycosyltransferase, tdp2 bound form
13 | d1f0ka_ |
|  | 98.7 | 13 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Peptidoglycan biosynthesis glycosyltransferase MurG
14 | d1rrva_ |
|  | 98.6 | 11 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase
15 | c3othB_ |
|  | 98.6 | 15 | PDB header:transferase/antibiotic Chain: B: PDB Molecule:calg1; PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form
16 | c2p6pB_ |
|  | 98.6 | 14 | PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase; PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2
17 | c3oy2A_ |
|  | 98.6 | 9 | PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a
18 | c2jjmH_ |
|  | 98.5 | 11 | PDB header:transferase Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein; PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558.
19 | c3hbmA_ |
|  | 98.5 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:udp-sugar hydrolase; PDBTitle: crystal structure of pseg from campylobacter jejuni
20 | d1iira_ |
|  | 98.4 | 11 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase
21 | c2iyaB_ |
| not modelled | 98.4 | 12 | PDB header:transferase Chain: B: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering
22 | c2xcuC_ |
| not modelled | 98.3 | 14 | PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp
23 | c2iyfA_ |
| not modelled | 98.1 | 14 | PDB header:transferase Chain: A: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering
24 | c3d0qB_ |
| not modelled | 98.1 | 16 | PDB header:transferase Chain: B: PDB Molecule:protein calg3; PDBTitle: crystal structure of calg3 from micromonospora echinospora determined2 in space group i222
25 | c2x6rA_ |
| not modelled | 98.1 | 10 | PDB header:isomerase Chain: A: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose
26 | c2xmpB_ |
| not modelled | 98.0 | 11 | PDB header:sugar binding protein Chain: B: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp
27 | c2vsnB_ |
| not modelled | 98.0 | 11 | PDB header:transferase Chain: B: PDB Molecule:xcogt; PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation
28 | d2acva1 |
| not modelled | 97.9 | 14 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like
29 | c2r60A_ |
| not modelled | 97.8 | 11 | PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii
30 | c3ia7A_ |
| not modelled | 97.8 | 16 | PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase
31 | c2qzsA_ |
| not modelled | 97.8 | 15 | PDB header:transferase Chain: A: PDB Molecule:glycogen synthase; PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb)
32 | d1rzua_ |
| not modelled | 97.7 | 13 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1
33 | c3okaA_ |
| not modelled | 97.6 | 13 | PDB header:transferase Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form)
34 | c3hbjA_ |
| not modelled | 97.4 | 10 | PDB header:transferase Chain: A: PDB Molecule:flavonoid 3-o-glucosyltransferase; PDBTitle: structure of ugt78g1 complexed with udp
35 | d2bisa1 |
| not modelled | 97.3 | 14 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1
36 | c3pe3D_ |
| not modelled | 97.0 | 11 | PDB header:transferase Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n- PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate
37 | c2x0dA_ |
| not modelled | 97.0 | 16 | PDB header:transferase Chain: A: PDB Molecule:wsaf; PDBTitle: apo structure of wsaf
38 | d2c1xa1 |
| not modelled | 96.8 | 11 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like
39 | d2iw1a1 |
| not modelled | 96.6 | 9 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1
40 | d2f9fa1 |
| not modelled | 95.9 | 14 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1
41 | c2iv3B_ |
| not modelled | 95.6 | 17 | PDB header:transferase Chain: B: PDB Molecule:glycosyltransferase; PDBTitle: crystal structure of avigt4, a glycosyltransferase involved2 in avilamycin a biosynthesis
42 | c3qhpB_ |
| not modelled | 95.6 | 11 | PDB header:transferase Chain: B: PDB Molecule:type 1 capsular polysaccharide biosynthesis protein j PDBTitle: crystal structure of the catalytic domain of cholesterol-alpha-2 glucosyltransferase from helicobacter pylori
43 | d2pq6a1 |
| not modelled | 95.1 | 9 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like
44 | c3q3hA_ |
| not modelled | 95.0 | 9 | PDB header:transferase Chain: A: PDB Molecule:hmw1c-like glycosyltransferase; PDBTitle: crystal structure of the actinobacillus pleuropneumoniae hmw1c2 glycosyltransferase in complex with udp-glc
45 | c2o6lA_ |
| not modelled | 94.7 | 10 | PDB header:transferase Chain: A: PDB Molecule:udp-glucuronosyltransferase 2b7; PDBTitle: crystal structure of the udp-glucuronic acid binding domain2 of the human drug metabolizing udp-glucuronosyltransferase3 2b7
46 | c2q6vA_ |
| not modelled | 94.1 | 9 | PDB header:transferase Chain: A: PDB Molecule:glucuronosyltransferase gumk; PDBTitle: crystal structure of gumk in complex with udp
47 | c2khzB_ |
| not modelled | 93.7 | 26 | PDB header:nuclear protein Chain: B: PDB Molecule:c-myc-responsive protein rcl; PDBTitle: solution structure of rcl
48 | d2vcha1 |
| not modelled | 93.0 | 10 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like
49 | c3ehdA_ |
| not modelled | 91.9 | 16 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein; PDBTitle: crystal structure of conserved protein from enterococcus faecalis v583
50 | d2f62a1 |
| not modelled | 91.8 | 16 | Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase
51 | d1m1na_ |
| not modelled | 89.6 | 10 | Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein
52 | c1uquB_ |
| not modelled | 89.0 | 5 | PDB header:synthase Chain: B: PDB Molecule:alpha, alpha-trehalose-phosphate synthase; PDBTitle: trehalose-6-phosphate from e. coli bound with udp-glucose.
53 | c3l7mC_ |
| not modelled | 88.3 | 14 | PDB header:structural protein Chain: C: PDB Molecule:teichoic acid biosynthesis protein f; PDBTitle: structure of the wall teichoic acid polymerase tagf, h548a
54 | d1qh8a_ |
| not modelled | 88.0 | 13 | Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein
55 | d1f8ya_ |
| not modelled | 88.0 | 11 | Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase
56 | d1b74a1 |
| not modelled | 86.5 | 16 | Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase
57 | d1s2da_ |
| not modelled | 85.6 | 23 | Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase
58 | c1b74A_ |
| not modelled | 82.3 | 16 | PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: glutamate racemase from aquifex pyrophilus
59 | d1cfza_ |
| not modelled | 82.2 | 14 | Fold:Phosphorylase/hydrolase-like Superfamily:HybD-like Family:Hydrogenase maturating endopeptidase HybD
60 | d1uqta_ |
| not modelled | 79.7 | 11 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Trehalose-6-phosphate synthase, OtsA
61 | c2qytA_ |
| not modelled | 76.1 | 9 | PDB header:oxidoreductase Chain: A: PDB Molecule:2-dehydropantoate 2-reductase; PDBTitle: crystal structure of 2-dehydropantoate 2-reductase from porphyromonas2 gingivalis w83
62 | c3uhjE_ |
| not modelled | 75.7 | 17 | PDB header:oxidoreductase Chain: E: PDB Molecule:probable glycerol dehydrogenase; PDBTitle: crystal structure of a probable glycerol dehydrogenase from2 sinorhizobium meliloti 1021
63 | c3qvjB_ |
| not modelled | 74.3 | 16 | PDB header:isomerase Chain: B: PDB Molecule:putative hydantoin racemase; PDBTitle: allantoin racemase from klebsiella pneumoniae
64 | c2jfzB_ |
| not modelled | 73.6 | 15 | PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor
65 | c3afoB_ |
| not modelled | 72.6 | 14 | PDB header:transferase Chain: B: PDB Molecule:nadh kinase pos5; PDBTitle: crystal structure of yeast nadh kinase complexed with nadh
66 | c3cwcB_ |
| not modelled | 70.8 | 26 | PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2
67 | d1uana_ |
| not modelled | 69.4 | 17 | Fold:LmbE-like Superfamily:LmbE-like Family:LmbE-like
68 | d1a9xa3 |
| not modelled | 67.9 | 18 | Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like
69 | d1ks9a2 |
| not modelled | 67.8 | 16 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
70 | d1m1nb_ |
| not modelled | 67.8 | 12 | Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein
71 | d1vl0a_ |
| not modelled | 67.7 | 7 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
72 | c3icpA_ |
| not modelled | 67.7 | 13 | PDB header:isomerase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of udp-galactose 4-epimerase
73 | c3rhzB_ |
| not modelled | 67.6 | 18 | PDB header:transferase Chain: B: PDB Molecule:nucleotide sugar synthetase-like protein; PDBTitle: structure and functional analysis of a new subfamily of2 glycosyltransferases required for glycosylation of serine-rich3 streptococcal adhesions
74 | c2p5uC_ |
| not modelled | 66.8 | 18 | PDB header:isomerase Chain: C: PDB Molecule:udp-glucose 4-epimerase; PDBTitle: crystal structure of thermus thermophilus hb8 udp-glucose 4-2 epimerase complex with nad
75 | d1vbga2 |
| not modelled | 66.4 | 11 | Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain
76 | c2e85B_ |
| not modelled | 66.4 | 14 | PDB header:hydrolase Chain: B: PDB Molecule:hydrogenase 3 maturation protease; PDBTitle: crystal structure of the hydrogenase 3 maturation protease
77 | d1n2sa_ |
| not modelled | 64.9 | 13 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
78 | d1kbla2 |
| not modelled | 64.9 | 16 | Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain
79 | c3g17H_ |
| not modelled | 64.5 | 15 | PDB header:structural genomics, unknown function Chain: H: PDB Molecule:similar to 2-dehydropantoate 2-reductase; PDBTitle: structure of putative 2-dehydropantoate 2-reductase from2 staphylococcus aureus
80 | c3m2pD_ |
| not modelled | 64.5 | 3 | PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 4-epimerase; PDBTitle: the crystal structure of udp-n-acetylglucosamine 4-epimerase2 from bacillus cereus
81 | c2h31A_ |
| not modelled | 64.2 | 15 | PDB header:ligase, lyase Chain: A: PDB Molecule:multifunctional protein ade2; PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis
82 | c3fhlC_ |
| not modelled | 64.2 | 16 | PDB header:oxidoreductase Chain: C: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of a putative oxidoreductase from bacteroides2 fragilis nctc 9343
83 | d2c5aa1 |
| not modelled | 64.2 | 6 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
84 | d1udca_ |
| not modelled | 63.0 | 21 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
85 | c3ghyA_ |
| not modelled | 61.8 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:ketopantoate reductase protein; PDBTitle: crystal structure of a putative ketopantoate reductase from ralstonia2 solanacearum molk2
86 | c3gfgB_ |
| not modelled | 61.8 | 15 | PDB header:oxidoreductase Chain: B: PDB Molecule:uncharacterized oxidoreductase yvaa; PDBTitle: structure of putative oxidoreductase yvaa from bacillus subtilis in2 triclinic form
87 | c3lp8A_ |
| not modelled | 61.6 | 13 | PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine-glycine ligase; PDBTitle: crystal structure of phosphoribosylamine-glycine ligase from2 ehrlichia chaffeensis
88 | c3lp6D_ |
| not modelled | 61.2 | 28 | PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution
89 | d1o4va_ |
| not modelled | 61.1 | 20 | Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
90 | c2x4gA_ |
| not modelled | 60.9 | 12 | PDB header:isomerase Chain: A: PDB Molecule:nucleoside-diphosphate-sugar epimerase; PDBTitle: crystal structure of pa4631, a nucleoside-diphosphate-sugar2 epimerase from pseudomonas aeruginosa
91 | c2ggsB_ |
| not modelled | 60.5 | 15 | PDB header:oxidoreductase Chain: B: PDB Molecule:273aa long hypothetical dtdp-4-dehydrorhamnose PDBTitle: crystal structure of hypothetical dtdp-4-dehydrorhamnose2 reductase from sulfolobus tokodaii
92 | c2ofpB_ |
| not modelled | 60.5 | 15 | PDB header:oxidoreductase Chain: B: PDB Molecule:ketopantoate reductase; PDBTitle: crystal structure of escherichia coli ketopantoate2 reductase in a ternary complex with nadp+ and pantoate
93 | c2ejbA_ |
| not modelled | 60.0 | 14 | PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus
94 | c3pu6A_ |
| not modelled | 59.7 | 9 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of an uncharacterized protein from wolinella2 succinogenes
95 | c3pdiG_ |
| not modelled | 59.7 | 12 | PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen
96 | d1miob_ |
| not modelled | 59.1 | 12 | Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein
97 | d2bfwa1 |
| not modelled | 59.1 | 12 | Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1
98 | c3sc6F_ |
| not modelled | 58.8 | 8 | PDB header:oxidoreductase Chain: F: PDB Molecule:dtdp-4-dehydrorhamnose reductase; PDBTitle: 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 reductase (rfbd) from bacillus anthracis str. ames in complex with3 nadp
99 | d1txga2 |
| not modelled | 58.6 | 21 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
100 | c2v4oB_ |
| not modelled | 57.3 | 15 | PDB header:hydrolase Chain: B: PDB Molecule:multifunctional protein sur e; PDBTitle: crystal structure of salmonella typhimurium sure at 2.752 angstrom resolution in monoclinic form
101 | c3rggD_ |
| not modelled | 57.0 | 15 | PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein; PDBTitle: crystal structure of treponema denticola pure bound to air
102 | d2f1ka2 |
| not modelled | 56.4 | 17 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
103 | c2pzlB_ |
| not modelled | 56.3 | 16 | PDB header:sugar binding protein Chain: B: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme2 wbmg in complex with nad and udp
104 | c2jzcA_ |
| not modelled | 55.8 | 21 | PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine transferase subunit PDBTitle: nmr solution structure of alg13: the sugar donor subunit of2 a yeast n-acetylglucosamine transferase. northeast3 structural genomics consortium target yg1
105 | c2xd4A_ |
| not modelled | 51.4 | 16 | PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: nucleotide-bound structures of bacillus subtilis glycinamide2 ribonucleotide synthetase
106 | c3evnA_ |
| not modelled | 51.3 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of putative oxidoreductase from streptococcus2 agalactiae 2603v/r
107 | c2pk3B_ |
| not modelled | 51.1 | 11 | PDB header:oxidoreductase Chain: B: PDB Molecule:gdp-6-deoxy-d-lyxo-4-hexulose reductase; PDBTitle: crystal structure of a gdp-4-keto-6-deoxy-d-mannose reductase
108 | c3kuxA_ |
| not modelled | 50.2 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of the ypo2259 putative oxidoreductase from yersinia pestis
109 | d1mioa_ |
| not modelled | 50.0 | 10 | Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein
110 | d1qh8b_ |
| not modelled | 49.9 | 15 | Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein
111 | c1ks9A_ |
| not modelled | 48.8 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:2-dehydropantoate 2-reductase; PDBTitle: ketopantoate reductase from escherichia coli
112 | c2vrcD_ |
| not modelled | 48.5 | 9 | PDB header:oxidoreductase Chain: D: PDB Molecule:triphenylmethane reductase; PDBTitle: crystal structure of the citrobacter sp. triphenylmethane2 reductase complexed with nadp(h)
113 | c3orsD_ |
| not modelled | 47.2 | 15 | PDB header:isomerase,biosynthetic protein Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus
114 | c3pfnB_ |
| not modelled | 47.0 | 10 | PDB header:transferase Chain: B: PDB Molecule:nad kinase; PDBTitle: crystal structure of human nad kinase
115 | c3qtpB_ |
| not modelled | 46.1 | 16 | PDB header:lyase Chain: B: PDB Molecule:enolase 1; PDBTitle: crystal structure analysis of entamoeba histolytica enolase
116 | c2ys6A_ |
| not modelled | 45.9 | 21 | PDB header:ligase Chain: A: PDB Molecule:phosphoribosylglycinamide synthetase; PDBTitle: crystal structure of gar synthetase from geobacillus kaustophilus
117 | d1to6a_ |
| not modelled | 45.4 | 17 | Fold:Glycerate kinase I Superfamily:Glycerate kinase I Family:Glycerate kinase I
118 | c3pdiB_ |
| not modelled | 45.3 | 17 | PDB header:protein binding Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn; PDBTitle: precursor bound nifen
119 | c1kblA_ |
| not modelled | 45.1 | 16 | PDB header:transferase Chain: A: PDB Molecule:pyruvate phosphate dikinase; PDBTitle: pyruvate phosphate dikinase
120 | c1txgA_ |
| not modelled | 44.8 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase [nad(p)+]; PDBTitle: structure of glycerol-3-phosphate dehydrogenase from archaeoglobus2 fulgidus

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction |

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0