Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	I	L	Y	E	E	R	L	D	G	A	L	P	D	V	D	R	T	S	V	L	M	A	L	R	E	H	V	P	G	L	E	I	L	H	T	D	E	E	I	I	P	Y	E	C	D	G	L	S	A	Y	R	T	R	P	L	L	V	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	P	K	Q	M	E	Q	V	T	A	I	L	A	V	C	H	R	L	R	V	P	V	V	T	R	G	A	G	T	G	L	S	G	G	A	L	P	L	E	K	G	V	L	L	V	M	A	R	F	K	E	I	L	D	I	N	P	V	G	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	A	R	V	Q	P	G	V	R	N	L	A	I	S	Q	A	V	A	P	H	N	L	Y	Y	A	P	D	P	S	S	Q	I	A	C	S	I	G	G	N	V	A	E	N	A	G	G	V	H	C	L	K	Y	G	L	T	V	H	N	L	L
Secondary structure
SS confidence
Disorder																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		K	I	E	V	Q	T	L	D	G	E	A	L	T	L	G	S	D	A	L	D	S	P	G	F	D	L	L	A	L	F	T	G	S	E	G	M	L	G	V	T	T	E	V	T	V	K	L	L	P	K	P	P	V	A	R	V	L	L	A	S
Secondary structure
SS confidence
Disorder															?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		F	D	S	V	E	K	A	G	L	A	V	G	D	I	I	A	N	G	I	I	P	G	G	L	E	M	M	D	N	L	S	I	R	A	A	E	D	F	I	H	A	G	Y	P	V	D	A	E	A	I	L	L	C	E	L	D	G	V	E	S
Secondary structure
SS confidence
Disorder																																									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	V	Q	E	D	C	E	R	V	N	D	I	L	L	K	A	G	A	T	D	V	R	L	A	Q	D	E	A	E	R	V	R	F	W	A	G	R	K	N	A	F	P	A	V	G	R	I	S	P	D	Y	Y	C	M	D	G	T	I	P	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		R	A	L	P	G	V	L	E	G	I	A	R	L	S	Q	Q	Y	D	L	R	V	A	N	V	F	H	A	G	D	G	N	M	H	P	L	I	L	F	D	A	N	E	P	G	E	F	A	R	A	E	E	L	G	G	K	I	L	E	L	C
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		V	E	V	G	G	S	I	S	G	E	H	G	I	G	R	E	K	I	N	Q	M	C	A	Q	F	N	S	D	E	I	T	T	F	H	A	V	K	A	A	F	D	P	D	G	L	L	N	P	G	K	N	I	P	T	L	H	R	C	A	E
Secondary structure
SS confidence
Disorder																																																										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
Sequence		F	G	A	M	H	V	H	H	G	H	L	P	F	P	E	L	E	R	F
Secondary structure
SS confidence
Disorder		?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3pm9 chain A Region: 18 - 472 Aligned: 455 Modelled: 455 Confidence: 100.0% Identity: 25% PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of a putative dehydrogenase (rpa1076) from2 rhodopseudomonas palustris cga009 at 2.57 a resolution Phyre2 PDB 1ahu chain B Region: 8 - 478 Aligned: 467 Modelled: 471 Confidence: 100.0% Identity: 18% PDB header:flavoenzyme Chain: B: PDB Molecule:vanillyl-alcohol oxidase; PDBTitle: structure of the octameric flavoenzyme vanillyl-alcohol2 oxidase in complex with p-cresol Phyre2 PDB 2uuv chain C Region: 12 - 468 Aligned: 403 Modelled: 419 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: C: PDB Molecule:alkyldihydroxyacetonephosphate synthase; PDBTitle: alkyldihydroxyacetonephosphate synthase in p1 Phyre2 PDB 1f0x chain A Region: 18 - 470 Aligned: 430 Modelled: 443 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:d-lactate dehydrogenase; PDBTitle: crystal structure of d-lactate dehydrogenase, a peripheral2 membrane respiratory enzyme. Phyre2 PDB 1wve chain B Region: 9 - 473 Aligned: 461 Modelled: 465 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: B: PDB Molecule:4-cresol dehydrogenase [hydroxylating] PDBTitle: p-cresol methylhydroxylase: alteration of the structure of2 the flavoprotein subunit upon its binding to the3 cytochrome subunit Phyre2 PDB 3bw7 chain A Region: 23 - 472 Aligned: 443 Modelled: 450 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:cytokinin dehydrogenase 1; PDBTitle: maize cytokinin oxidase/dehydrogenase complexed with the allenic2 cytokinin analog ha-1 Phyre2 PDB 2exr chain A Region: 31 - 472 Aligned: 435 Modelled: 438 Confidence: 100.0% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:cytokinin dehydrogenase 7; PDBTitle: x-ray structure of cytokinin oxidase/dehydrogenase (ckx)2 from arabidopsis thaliana at5g21482 Phyre2 PDB 2bvf chain A Region: 29 - 474 Aligned: 426 Modelled: 428 Confidence: 100.0% Identity: 16% PDB header:oxidase Chain: A: PDB Molecule:6-hydroxy-d-nicotine oxidase; PDBTitle: crystal structure of 6-hydoxy-d-nicotine oxidase from2 arthrobacter nicotinovorans. crystal form 3 (p1) Phyre2 PDB 3fwa chain A Region: 21 - 478 Aligned: 440 Modelled: 446 Confidence: 100.0% Identity: 13% PDB header:flavoprotein Chain: A: PDB Molecule:reticuline oxidase; PDBTitle: structure of berberine bridge enzyme, c166a variant in complex with2 (s)-reticuline Phyre2 PDB 1zr6 chain A Region: 15 - 476 Aligned: 443 Modelled: 458 Confidence: 100.0% Identity: 12% PDB header:oxidoreductase Chain: A: PDB Molecule:glucooligosaccharide oxidase; PDBTitle: the crystal structure of an acremonium strictum glucooligosaccharide2 oxidase reveals a novel flavinylation Phyre2 PDB 3d2h chain A Region: 21 - 477 Aligned: 439 Modelled: 457 Confidence: 100.0% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:berberine bridge-forming enzyme; PDBTitle: structure of berberine bridge enzyme from eschscholzia californica,2 monoclinic crystal form Phyre2 PDB 2ipi chain D Region: 33 - 475 Aligned: 441 Modelled: 442 Confidence: 100.0% Identity: 13% PDB header:oxidoreductase Chain: D: PDB Molecule:aclacinomycin oxidoreductase (aknox); PDBTitle: crystal structure of aclacinomycin oxidoreductase Phyre2 PDB 3pop chain D Region: 30 - 473 Aligned: 434 Modelled: 444 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: D: PDB Molecule:gilr oxidase; PDBTitle: the crystal structure of gilr, an oxidoreductase that catalyzes the2 terminal step of gilvocarcin biosynthesis Phyre2 PDB 2wdw chain B Region: 36 - 474 Aligned: 429 Modelled: 439 Confidence: 100.0% Identity: 15% PDB header:oxidoreductase Chain: B: PDB Molecule:putative hexose oxidase; PDBTitle: the native crystal structure of the primary hexose oxidase (2 dbv29) in antibiotic a40926 biosynthesis Phyre2 PDB 2y3r chain C Region: 32 - 473 Aligned: 433 Modelled: 442 Confidence: 100.0% Identity: 15% PDB header:oxidoreductase Chain: C: PDB Molecule:taml; PDBTitle: structure of the tirandamycin-bound fad-dependent2 tirandamycin oxidase taml in p21 space group Phyre2 PDB 2vfv chain A Region: 46 - 468 Aligned: 394 Modelled: 409 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:xylitol oxidase; PDBTitle: alditol oxidase from streptomyces coelicolor a3(2): complex2 with sulphite Phyre2 PDB 1i19 chain B Region: 46 - 473 Aligned: 399 Modelled: 428 Confidence: 100.0% Identity: 15% PDB header:oxidoreductase Chain: B: PDB Molecule:cholesterol oxidase; PDBTitle: crystal structure of cholesterol oxidase from b.sterolicum Phyre2 PDB 3js8 chain A Region: 46 - 468 Aligned: 414 Modelled: 422 Confidence: 100.0% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:cholesterol oxidase; PDBTitle: solvent-stable cholesterol oxidase Phyre2 PDB 1wvf chain A domain 2 Region: 9 - 231 Aligned: 222 Modelled: 221 Confidence: 100.0% Identity: 22% Fold: FAD-binding/transporter-associated domain-like Superfamily: FAD-binding/transporter-associated domain-like Family: FAD-linked oxidases, N-terminal domain Phyre2 PDB 1f0x chain A domain 2 Region: 18 - 230 Aligned: 209 Modelled: 213 Confidence: 100.0% Identity: 22% Fold: FAD-binding/transporter-associated domain-like Superfamily: FAD-binding/transporter-associated domain-like Family: FAD-linked oxidases, N-terminal domain Phyre2 1 c3pm9A_ 2 c1ahuB_ 3 c2uuvC_ 4 c1f0xA_ 5 c1wveB_ 6 c3bw7A_ 7 c2exrA_ 8 c2bvfA_ 9 c3fwaA_ 10 c1zr6A_ 11 c3d2hA_ 12 c2ipiD_ 13 c3popD_ 14 c2wdwB_ 15 c2y3rC_ 16 c2vfvA_ 17 c1i19B_ 18 c3js8A_ 19 d1wvfa2 20 d1f0xa2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3pm9A_ 100.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of a putative dehydrogenase (rpa1076) from2 rhodopseudomonas palustris cga009 at 2.57 a resolution 2 c1ahuB_ 100.0 18 PDB header:flavoenzyme Chain: B: PDB Molecule:vanillyl-alcohol oxidase; PDBTitle: structure of the octameric flavoenzyme vanillyl-alcohol2 oxidase in complex with p-cresol 3 c2uuvC_ 100.0 21 PDB header:transferase Chain: C: PDB Molecule:alkyldihydroxyacetonephosphate synthase; PDBTitle: alkyldihydroxyacetonephosphate synthase in p1 4 c1f0xA_ 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:d-lactate dehydrogenase; PDBTitle: crystal structure of d-lactate dehydrogenase, a peripheral2 membrane respiratory enzyme. 5 c1wveB_ 100.0 20 PDB header:oxidoreductase Chain: B: PDB Molecule:4-cresol dehydrogenase [hydroxylating] PDBTitle: p-cresol methylhydroxylase: alteration of the structure of2 the flavoprotein subunit upon its binding to the3 cytochrome subunit 6 c3bw7A_ 100.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:cytokinin dehydrogenase 1; PDBTitle: maize cytokinin oxidase/dehydrogenase complexed with the allenic2 cytokinin analog ha-1 7 c2exrA_ 100.0 15 PDB header:oxidoreductase Chain: A: PDB Molecule:cytokinin dehydrogenase 7; PDBTitle: x-ray structure of cytokinin oxidase/dehydrogenase (ckx)2 from arabidopsis thaliana at5g21482 8 c2bvfA_ 100.0 16 PDB header:oxidase Chain: A: PDB Molecule:6-hydroxy-d-nicotine oxidase; PDBTitle: crystal structure of 6-hydoxy-d-nicotine oxidase from2 arthrobacter nicotinovorans. crystal form 3 (p1) 9 c3fwaA_ 100.0 13 PDB header:flavoprotein Chain: A: PDB Molecule:reticuline oxidase; PDBTitle: structure of berberine bridge enzyme, c166a variant in complex with2 (s)-reticuline 10 c1zr6A_ 100.0 12 PDB header:oxidoreductase Chain: A: PDB Molecule:glucooligosaccharide oxidase; PDBTitle: the crystal structure of an acremonium strictum glucooligosaccharide2 oxidase reveals a novel flavinylation 11 c3d2hA_ 100.0 14 PDB header:oxidoreductase Chain: A: PDB Molecule:berberine bridge-forming enzyme; PDBTitle: structure of berberine bridge enzyme from eschscholzia californica,2 monoclinic crystal form 12 c2ipiD_ 100.0 13 PDB header:oxidoreductase Chain: D: PDB Molecule:aclacinomycin oxidoreductase (aknox); PDBTitle: crystal structure of aclacinomycin oxidoreductase 13 c3popD_ 100.0 17 PDB header:oxidoreductase Chain: D: PDB Molecule:gilr oxidase; PDBTitle: the crystal structure of gilr, an oxidoreductase that catalyzes the2 terminal step of gilvocarcin biosynthesis 14 c2wdwB_ 100.0 15 PDB header:oxidoreductase Chain: B: PDB Molecule:putative hexose oxidase; PDBTitle: the native crystal structure of the primary hexose oxidase (2 dbv29) in antibiotic a40926 biosynthesis 15 c2y3rC_ 100.0 15 PDB header:oxidoreductase Chain: C: PDB Molecule:taml; PDBTitle: structure of the tirandamycin-bound fad-dependent2 tirandamycin oxidase taml in p21 space group 16 c2vfvA_ 100.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:xylitol oxidase; PDBTitle: alditol oxidase from streptomyces coelicolor a3(2): complex2 with sulphite 17 c1i19B_ 100.0 15 PDB header:oxidoreductase Chain: B: PDB Molecule:cholesterol oxidase; PDBTitle: crystal structure of cholesterol oxidase from b.sterolicum 18 c3js8A_ 100.0 14 PDB header:oxidoreductase Chain: A: PDB Molecule:cholesterol oxidase; PDBTitle: solvent-stable cholesterol oxidase 19 d1wvfa2 100.0 22 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain 20 d1f0xa2 100.0 22 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain 21 d1e8ga2 not modelled 100.0 21 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain 22 d1w1oa2 not modelled 100.0 20 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain 23 d2i0ka2 not modelled 100.0 22 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain 24 d1hska1 not modelled 100.0 19 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain 25 d1e8ga1 not modelled 100.0 16 Fold:Ferredoxin-like Superfamily:FAD-linked oxidases, C-terminal domain Family:Vanillyl-alcohol oxidase-like 26 d1uxya1 not modelled 100.0 12 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain 27 c1hskA_ not modelled 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:udp-n-acetylenolpyruvoylglucosamine reductase; PDBTitle: crystal structure of s. aureus murb 28 d1wvfa1 not modelled 100.0 20 Fold:Ferredoxin-like Superfamily:FAD-linked oxidases, C-terminal domain Family:Vanillyl-alcohol oxidase-like 29 d1f0xa1 not modelled 100.0 20 Fold:Ferredoxin-like Superfamily:FAD-linked oxidases, C-terminal domain Family:D-lactate dehydrogenase 30 c2yvsA_ not modelled 100.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:glycolate oxidase subunit glce; PDBTitle: crystal structure of glycolate oxidase subunit glce from thermus2 thermophilus hb8 31 c1mbbA_ not modelled 100.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:uridine diphospho-n-acetylenolpyruvylglucosamine PDBTitle: oxidoreductase 32 c3i99A_ not modelled 99.9 12 PDB header:oxidoreductase Chain: A: PDB Molecule:udp-n-acetylenolpyruvoylglucosamine reductase; PDBTitle: the crystal structure of the udp-n-acetylenolpyruvoylglucosamine2 reductase from the vibrio cholerae o1 biovar tor 33 c2gquA_ not modelled 99.9 21 PDB header:oxidoreductase Chain: A: PDB Molecule:udp-n-acetylenolpyruvylglucosamine reductase; PDBTitle: crystal structure of udp-n-acetylenolpyruvylglucosamine2 reductase (murb) from thermus caldophilus 34 d1w1oa1 not modelled 99.3 16 Fold:Ferredoxin-like Superfamily:FAD-linked oxidases, C-terminal domain Family:Cytokinin dehydrogenase 1 35 d1ffvc2 not modelled 97.8 19 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 36 c1n62C_ not modelled 97.8 17 PDB header:oxidoreductase Chain: C: PDB Molecule:carbon monoxide dehydrogenase medium chain; PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state 37 c1ffuF_ not modelled 97.7 20 PDB header:hydrolase Chain: F: PDB Molecule:cutm, flavoprotein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor 38 c1t3qF_ not modelled 97.5 14 PDB header:oxidoreductase Chain: F: PDB Molecule:quinoline 2-oxidoreductase medium subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 39 d3b9jb2 not modelled 97.5 10 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 40 c3etrM_ not modelled 97.5 8 PDB header:oxidoreductase Chain: M: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of xanthine oxidase in complex with2 lumazine 41 c3b9jJ_ not modelled 97.5 8 PDB header:oxidoreductase Chain: J: PDB Molecule:xanthine oxidase; PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine 42 c3hrdC_ not modelled 97.4 17 PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinate dehydrogenase fad-subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 43 d1v97a6 not modelled 97.4 10 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 44 d1t3qc2 not modelled 97.3 15 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 45 d1n62c2 not modelled 97.3 18 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 46 d1jroa4 not modelled 97.2 13 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 47 c1rm6E_ not modelled 97.0 20 PDB header:oxidoreductase Chain: E: PDB Molecule:4-hydroxybenzoyl-coa reductase beta subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica 48 c2w3rG_ not modelled 96.9 16 PDB header:oxidoreductase Chain: G: PDB Molecule:xanthine dehydrogenase; PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine 49 d1rm6b2 not modelled 96.3 21 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 50 c1wygA_ not modelled 95.9 14 PDB header:oxidoreductase Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s) 51 d2i0ka1 not modelled 86.0 13 Fold:Ferredoxin-like Superfamily:FAD-linked oxidases, C-terminal domain Family:Cholesterol oxidase 52 d1jaka1 not modelled 67.9 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain 53 d1yhta1 not modelled 64.9 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain 54 d1qbaa3 not modelled 64.2 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain 55 d1nowa1 not modelled 63.7 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain 56 c3nsnA_ not modelled 63.2 10 PDB header:hydrolase Chain: A: PDB Molecule:n-acetylglucosaminidase; PDBTitle: crystal structure of insect beta-n-acetyl-d-hexosaminidase ofhex12 complexed with tmg-chitotriomycin 57 c1nouA_ not modelled 63.1 10 PDB header:hydrolase Chain: A: PDB Molecule:beta-hexosaminidase beta chain; PDBTitle: native human lysosomal beta-hexosaminidase isoform b 58 d2gjxa1 not modelled 63.0 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain 59 c3gh7A_ not modelled 62.8 19 PDB header:hydrolase Chain: A: PDB Molecule:beta-hexosaminidase; PDBTitle: crystal structure of beta-hexosaminidase from paenibacillus2 sp. ts12 in complex with galnac 60 c1m04A_ not modelled 61.9 14 PDB header:hydrolase Chain: A: PDB Molecule:beta-n-acetylhexosaminidase; PDBTitle: mutant streptomyces plicatus beta-hexosaminidase (d313n) in complex2 with product (glcnac) 61 c3rcnA_ not modelled 61.5 14 PDB header:hydrolase Chain: A: PDB Molecule:beta-n-acetylhexosaminidase; PDBTitle: crystal structure of beta-n-acetylhexosaminidase from arthrobacter2 aurescens 62 c2yl8A_ not modelled 61.4 10 PDB header:hydrolase Chain: A: PDB Molecule:beta-n-acetylhexosaminidase; PDBTitle: inhibition of the pneumococcal virulence factor strh and2 molecular insights into n-glycan recognition and3 hydrolysis 63 c2uvaI_ not modelled 61.3 17 PDB header:transferase Chain: I: PDB Molecule:fatty acid synthase beta subunits; PDBTitle: crystal structure of fatty acid synthase from thermomyces2 lanuginosus at 3.1 angstrom resolution. this file contains3 the beta subunits of the fatty acid synthase. the entire4 crystal structure consists of one heterododecameric fatty5 acid synthase and is described in remark 400 64 c2ylaA_ not modelled 61.1 10 PDB header:hydrolase Chain: A: PDB Molecule:beta-n-acetylhexosaminidase; PDBTitle: inhibition of the pneumococcal virulence factor strh and2 molecular insights into n-glycan recognition and3 hydrolysis 65 c2dgxA_ not modelled 59.9 16 PDB header:rna binding protein Chain: A: PDB Molecule:kiaa0430 protein; PDBTitle: solution structure of the rna recognition motif in kiaa04302 protein 66 c2gjxE_ not modelled 59.7 10 PDB header:hydrolase Chain: E: PDB Molecule:beta-hexosaminidase alpha chain; PDBTitle: crystallographic structure of human beta-hexosaminidase a 67 c3lmyA_ not modelled 59.6 10 PDB header:hydrolase Chain: A: PDB Molecule:beta-hexosaminidase subunit beta; PDBTitle: the crystal structure of beta-hexosaminidase b in complex with2 pyrimethamine 68 c1qupA_ not modelled 59.1 11 PDB header:chaperone Chain: A: PDB Molecule:superoxide dismutase 1 copper chaperone; PDBTitle: crystal structure of the copper chaperone for superoxide2 dismutase 69 c2vkzH_ not modelled 58.9 19 PDB header:transferase Chain: H: PDB Molecule:fatty acid synthase subunit beta; PDBTitle: structure of the cerulenin-inhibited fungal fatty acid2 synthase type i multienzyme complex 70 c3rpmA_ not modelled 56.5 10 PDB header:hydrolase Chain: A: PDB Molecule:beta-n-acetyl-hexosaminidase; PDBTitle: crystal structure of the first gh20 domain of a novel beta-n-acetyl-2 hexosaminidase strh from streptococcus pneumoniae r6 71 c1qbaA_ not modelled 52.4 10 PDB header:glycosyl hydrolase Chain: A: PDB Molecule:chitobiase; PDBTitle: bacterial chitobiase, glycosyl hydrolase family 20 72 c1jk9D_ not modelled 51.1 11 PDB header:oxidoreductase Chain: D: PDB Molecule:copper chaperone for superoxide dismutase; PDBTitle: heterodimer between h48f-ysod1 and yccs 73 c2epoB_ not modelled 50.1 10 PDB header:hydrolase Chain: B: PDB Molecule:n-acetyl-beta-d-glucosaminidase; PDBTitle: n-acetyl-b-d-glucosaminidase (gcna) from streptococcus gordonii 74 c2bp7F_ not modelled 46.6 10 PDB header:oxidoreductase Chain: F: PDB Molecule:2-oxoisovalerate dehydrogenase beta subunit; PDBTitle: new crystal form of the pseudomonas putida branched-chain2 dehydrogenase (e1) 75 d2p0la1 not modelled 45.9 16 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:LplA-like 76 d2p5ia1 not modelled 44.1 33 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:LplA-like 77 c2yswB_ not modelled 39.2 16 PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystal structure of the 3-dehydroquinate dehydratase from aquifex2 aeolicus vf5 78 d2bi7a1 not modelled 39.1 19 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:UDP-galactopyranose mutase, N-terminal domain 79 d2cqpa1 not modelled 38.5 19 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 80 c3s01A_ not modelled 38.0 12 PDB header:rna binding protein Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l; PDBTitle: crystal structure of a heterogeneous nuclear ribonucleoprotein l2 (hnrpl) from mus musculus at 2.15 a resolution 81 c2do0A_ not modelled 37.4 16 PDB header:rna binding protein Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein m; PDBTitle: solution structure of the rna binding domain of2 heterogeneous nuclear ribonucleoprotein m 82 d1a9xb2 not modelled 36.8 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 83 c2x24B_ not modelled 36.6 22 PDB header:ligase Chain: B: PDB Molecule:acetyl-coa carboxylase; PDBTitle: bovine acc2 ct domain in complex with inhibitor 84 d1itza2 not modelled 35.5 11 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:TK-like Pyr module 85 c3ff6D_ not modelled 34.3 22 PDB header:ligase Chain: D: PDB Molecule:acetyl-coa carboxylase 2; PDBTitle: human acc2 ct domain with cp-640186 86 d1wexa_ not modelled 33.5 17 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 87 d1umdb1 not modelled 33.3 26 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 88 d2r8oa1 not modelled 32.8 11 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:TK-like Pyr module 89 c1od4C_ not modelled 32.7 19 PDB header:ligase Chain: C: PDB Molecule:acetyl-coenzyme a carboxylase; PDBTitle: acetyl-coa carboxylase carboxyltransferase domain 90 d2plsa1 not modelled 32.4 7 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 91 c2f3jA_ not modelled 31.2 16 PDB header:transport protein Chain: A: PDB Molecule:rna and export factor binding protein 2; PDBTitle: the solution structure of the ref2-i mrna export factor2 (residues 1-155). 92 d1no8a_ not modelled 29.8 16 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 93 c1no8A_ not modelled 29.8 16 PDB header:rna binding protein Chain: A: PDB Molecule:aly; PDBTitle: solution structure of the nuclear factor aly rbd domain 94 d1qupa2 not modelled 29.6 14 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 95 c2dnoA_ not modelled 29.3 21 PDB header:rna binding protein Chain: A: PDB Molecule:trinucleotide repeat containing 4 variant; PDBTitle: solution structure of rna binding domain in trinucleotide2 repeat containing 4 variant 96 c2e44A_ not modelled 28.8 15 PDB header:rna binding protein Chain: A: PDB Molecule:insulin-like growth factor 2 mrna binding PDBTitle: solution structure of rna binding domain in insulin-like2 growth factor 2 mrna binding protein 3 97 d1r9ja1 not modelled 28.3 22 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:TK-like Pyr module 98 c2fy1A_ not modelled 28.2 21 PDB header:structural protein/rna Chain: A: PDB Molecule:rna-binding motif protein, y chromosome, family PDBTitle: a dual mode of rna recognition by the rbmy protein 99 d2ozlb1 not modelled 27.8 30 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 100 d1ik6a1 not modelled 27.3 30 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 101 d1w85b1 not modelled 27.1 26 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 102 c2gvsA_ not modelled 26.8 38 PDB header:lipid binding protein Chain: A: PDB Molecule:chemosensory protein csp-sg4; PDBTitle: nmr solution structure of cspsg4 103 c2rneA_ not modelled 26.2 17 PDB header:rna binding protein Chain: A: PDB Molecule:tia1 protein; PDBTitle: solution structure of the second rna recognition motif2 (rrm) of tia-1 104 d1fhta_ not modelled 26.1 9 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 105 c3h0jA_ not modelled 25.0 19 PDB header:transferase Chain: A: PDB Molecule:acetyl-coa carboxylase; PDBTitle: crystal structure of the carboxyltransferase domain of2 acetyl-coenzyme a carboxylase in complex with compound 2 106 d1kx9b_ not modelled 24.6 29 Fold:alpha-alpha superhelix Superfamily:Chemosensory protein Csp2 Family:Chemosensory protein Csp2 107 d1n8va_ not modelled 22.1 25 Fold:alpha-alpha superhelix Superfamily:Chemosensory protein Csp2 Family:Chemosensory protein Csp2 108 d1qs0b1 not modelled 22.0 19 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 109 c2crlA_ not modelled 22.0 3 PDB header:chaperone Chain: A: PDB Molecule:copper chaperone for superoxide dismutase; PDBTitle: the apo form of hma domain of copper chaperone for2 superoxide dismutase 110 d1x5oa1 not modelled 22.0 17 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 111 c1uytC_ not modelled 21.9 19 PDB header:transferase Chain: C: PDB Molecule:acetyl-coa carboxylase; PDBTitle: acetyl-coa carboxylase carboxyltransferase domain 112 d1pixa3 not modelled 21.7 22 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 113 c2i38A_ not modelled 21.6 22 PDB header:rna binding protein/chimera Chain: A: PDB Molecule:fusion protein consists of immunoglobin g- PDBTitle: solution structure of the rrm of srp20 114 c2rd5D_ not modelled 21.5 31 PDB header:protein binding Chain: D: PDB Molecule:pii protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana 115 c2do4A_ not modelled 21.2 11 PDB header:immune system Chain: A: PDB Molecule:squamous cell carcinoma antigen recognized by t- PDBTitle: solution structure of the rna binding domain of squamous2 cell carcinoma antigen recognized by t cells 3 116 d2bfdb1 not modelled 20.9 26 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 117 c3qxbB_ not modelled 20.8 7 PDB header:isomerase Chain: B: PDB Molecule:putative xylose isomerase; PDBTitle: crystal structure of a putative xylose isomerase (yp_426450.1) from2 rhodospirillum rubrum atcc 11170 at 1.90 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0