Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP31806
DateThu Jan 5 11:48:44 GMT 2012
Unique Job IDeba0c50e06f5bcdd

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2ax3A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein tm0922;
PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution
Confidence and coverage
Confidence:100.0% Coverage: 92%
473 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTDHTMKKNPVSIPHTVWYADDIRRGEREAADVLGLTLYELMLRAGEAAFQVCRSAYPDA
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Disorder  ?????????????


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   .........70.........80.........90.........100.........110.........120
Sequence  RHWLVLCGHGNNGGDGYVVARLAKAVGIEVTLLAQESDKPLPEEAALAREAWLNAGGEIH
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   .........130.........140.........150.........160.........170.........180
Sequence  ASNIVWPESVDLIVDALLGTGLRQAPRESISQLIDHANSHPAPIVAVDIPSGLLAETGAT
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   .........190.........200.........210.........220.........230.........240
Sequence  PGAVINADHTITFIALKPGLLTGKARDVTGQLHFDSLGLDSWLAGQETKIQRFSAEQLSH
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   .........250.........260.........270.........280.........290.........300
Sequence  WLKPRRPTSHKGDHGRLVIIGGDHGTAGAIRMTGEAALRAGAGLVRVLTRSENIAPLLTA
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   .........310.........320.........330.........340.........350.........360
Sequence  RPELMVHELTMDSLTESLEWADVVVIGPGLGQQEWGKKALQKVENFRKPMLWDADALNLL
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   .........370.........380.........390.........400.........410.........420
Sequence  AINPDKRHNRVITPHPGEAARLLGCSVAEIESDRLHCAKRLVQRYGGVAVLKGAGTVVAA
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Disorder 


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   .........430.........440.........450.........460.........470.........480
Sequence  HPDALGIIDAGNAGMASGGMGDVLSGIIGALLGQKLSPYDAACAGCVAHGAAADVLAARF
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   .........490.........500.........510.....
Sequence  GTRGMLATDLFSTLQRIVNPEVTDKNHDESSNSAP
Secondary structure 


















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Disorder 






















????????????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2ax3 chain A

3D model

Region: 22 - 501
Aligned: 473
Modelled: 480
Confidence: 100.0%
Identity: 30%
PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein tm0922;
PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution

Phyre2

PDB 3k5w chain A

3D model

Region: 16 - 497
Aligned: 456
Modelled: 476
Confidence: 100.0%
Identity: 25%
PDB header:transferase
Chain: A: PDB Molecule:carbohydrate kinase;
PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori

Phyre2

PDB 2r3b chain A

3D model

Region: 227 - 503
Aligned: 271
Modelled: 277
Confidence: 100.0%
Identity: 31%
PDB header:transferase
Chain: A: PDB Molecule:yjef-related protein;
PDBTitle: crystal structure of a ribokinase-like superfamily protein (ef1790)2 from enterococcus faecalis v583 at 1.80 a resolution

Phyre2

PDB 3bgk chain A

3D model

Region: 232 - 502
Aligned: 267
Modelled: 269
Confidence: 100.0%
Identity: 29%
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the crystal structure of hypothetic protein smu.573 from2 streptococcus mutans

Phyre2

PDB 2ax3 chain A domain 1

3D model

Region: 234 - 501
Aligned: 264
Modelled: 268
Confidence: 100.0%
Identity: 32%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: YjeF C-terminal domain-like

Phyre2

PDB 1kyh chain A

3D model

Region: 229 - 501
Aligned: 265
Modelled: 273
Confidence: 100.0%
Identity: 29%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: YjeF C-terminal domain-like

Phyre2

PDB 2ax3 chain A domain 2

3D model

Region: 24 - 229
Aligned: 204
Modelled: 206
Confidence: 100.0%
Identity: 29%
Fold: YjeF N-terminal domain-like
Superfamily: YjeF N-terminal domain-like
Family: YjeF N-terminal domain-like

Phyre2

PDB 1jzt chain A

3D model

Region: 15 - 228
Aligned: 211
Modelled: 214
Confidence: 100.0%
Identity: 23%
Fold: YjeF N-terminal domain-like
Superfamily: YjeF N-terminal domain-like
Family: YjeF N-terminal domain-like

Phyre2

PDB 2dg2 chain D

3D model

Region: 14 - 226
Aligned: 205
Modelled: 213
Confidence: 100.0%
Identity: 24%
PDB header:protein binding
Chain: D: PDB Molecule:apolipoprotein a-i binding protein;
PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein

Phyre2

PDB 3d3k chain D

3D model

Region: 13 - 252
Aligned: 207
Modelled: 228
Confidence: 100.0%
Identity: 19%
PDB header:protein binding
Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: crystal structure of human edc3p

Phyre2

PDB 3d3j chain A

3D model

Region: 10 - 252
Aligned: 210
Modelled: 231
Confidence: 100.0%
Identity: 18%
PDB header:protein binding
Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: crystal structure of human edc3p

Phyre2

PDB 1ekq chain A

3D model

Region: 271 - 509
Aligned: 229
Modelled: 239
Confidence: 100.0%
Identity: 17%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: Thiamin biosynthesis kinases

Phyre2

PDB 1v8a chain A

3D model

Region: 271 - 510
Aligned: 234
Modelled: 238
Confidence: 100.0%
Identity: 21%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: Thiamin biosynthesis kinases

Phyre2

PDB 3rm5 chain B

3D model

Region: 241 - 470
Aligned: 227
Modelled: 230
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
PDBTitle: structure of trifunctional thi20 from yeast

Phyre2

PDB 3dzv chain B

3D model

Region: 306 - 509
Aligned: 203
Modelled: 202
Confidence: 99.9%
Identity: 14%
PDB header:transferase
Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase;
PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution

Phyre2

PDB 3nm3 chain D

3D model

Region: 260 - 513
Aligned: 250
Modelled: 254
Confidence: 99.9%
Identity: 15%
PDB header:transferase
Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme;
PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes

Phyre2

PDB 2i5b chain C

3D model

Region: 256 - 471
Aligned: 214
Modelled: 216
Confidence: 99.9%
Identity: 17%
PDB header:transferase
Chain: C: PDB Molecule:phosphomethylpyrimidine kinase;
PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution

Phyre2

PDB 1jxh chain A

3D model

Region: 253 - 471
Aligned: 208
Modelled: 219
Confidence: 99.9%
Identity: 19%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: Thiamin biosynthesis kinases

Phyre2

PDB 1ub0 chain A

3D model

Region: 256 - 471
Aligned: 212
Modelled: 216
Confidence: 99.9%
Identity: 18%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: Thiamin biosynthesis kinases

Phyre2

PDB 3mbj chain A

3D model

Region: 249 - 500
Aligned: 249
Modelled: 250
Confidence: 99.8%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase;
PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form)

Phyre2
1

c2ax3A_
2

c3k5wA_
3

c2r3bA_
4

c3bgkA_
5

d2ax3a1
6

d1kyha_
7

d2ax3a2
8

d1jzta_
9

c2dg2D_
10

c3d3kD_
11

c3d3jA_
12

d1ekqa_
13

d1v8aa_
14

c3rm5B_
15

c3dzvB_
16

c3nm3D_
17

c2i5bC_
18

d1jxha_
19

d1ub0a_
20

c3mbjA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2ax3A_



100.0 30 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein tm0922;
PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution
2c3k5wA_



100.0 25 PDB header:transferase
Chain: A: PDB Molecule:carbohydrate kinase;
PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori
3c2r3bA_



100.0 31 PDB header:transferase
Chain: A: PDB Molecule:yjef-related protein;
PDBTitle: crystal structure of a ribokinase-like superfamily protein (ef1790)2 from enterococcus faecalis v583 at 1.80 a resolution
4c3bgkA_



100.0 29 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the crystal structure of hypothetic protein smu.573 from2 streptococcus mutans
5d2ax3a1



100.0 32 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:YjeF C-terminal domain-like
6d1kyha_



100.0 29 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:YjeF C-terminal domain-like
7d2ax3a2



100.0 29 Fold:YjeF N-terminal domain-like
Superfamily:YjeF N-terminal domain-like
Family:YjeF N-terminal domain-like
8d1jzta_



100.0 23 Fold:YjeF N-terminal domain-like
Superfamily:YjeF N-terminal domain-like
Family:YjeF N-terminal domain-like
9c2dg2D_



100.0 24 PDB header:protein binding
Chain: D: PDB Molecule:apolipoprotein a-i binding protein;
PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein
10c3d3kD_



100.0 19 PDB header:protein binding
Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: crystal structure of human edc3p
11c3d3jA_



100.0 18 PDB header:protein binding
Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: crystal structure of human edc3p
12d1ekqa_



100.0 17 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Thiamin biosynthesis kinases
13d1v8aa_



100.0 21 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Thiamin biosynthesis kinases
14c3rm5B_



100.0 17 PDB header:transferase
Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
PDBTitle: structure of trifunctional thi20 from yeast
15c3dzvB_



99.9 14 PDB header:transferase
Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase;
PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution
16c3nm3D_



99.9 15 PDB header:transferase
Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme;
PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes
17c2i5bC_



99.9 17 PDB header:transferase
Chain: C: PDB Molecule:phosphomethylpyrimidine kinase;
PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution
18d1jxha_



99.9 19 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Thiamin biosynthesis kinases
19d1ub0a_



99.9 18 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Thiamin biosynthesis kinases
20c3mbjA_



99.8 16 PDB header:transferase
Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase;
PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form)
21c3ibqA_



not modelled 99.6 18 PDB header:transferase
Chain: A: PDB Molecule:pyridoxal kinase;
PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp
22d1vi9a_



not modelled 99.6 17 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:PfkB-like kinase
23d1lhpa_



not modelled 99.6 18 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:PfkB-like kinase
24c2ddmA_



not modelled 99.5 17 PDB header:transferase
Chain: A: PDB Molecule:pyridoxine kinase;
PDBTitle: crystal structure of pyridoxal kinase from the escherichia2 coli pdxk gene at 2.1 a resolution
25d2f02a1



not modelled 99.0 16 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
26c2jg1C_



not modelled 99.0 14 PDB header:transferase
Chain: C: PDB Molecule:tagatose-6-phosphate kinase;
PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate
27c3cqdB_



not modelled 98.9 15 PDB header:transferase
Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2;
PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli
28c2jg5B_



not modelled 98.8 15 PDB header:transferase
Chain: B: PDB Molecule:fructose 1-phosphate kinase;
PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus
29d2abqa1



not modelled 98.8 22 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
30c3kzhA_



not modelled 98.7 14 PDB header:transferase
Chain: A: PDB Molecule:probable sugar kinase;
PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens
31d2ajra1



not modelled 98.7 15 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
32c2rbcA_



not modelled 98.5 20 PDB header:transferase
Chain: A: PDB Molecule:sugar kinase;
PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens
33c3pl2D_



not modelled 98.5 16 PDB header:transferase
Chain: D: PDB Molecule:sugar kinase, ribokinase family;
PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution
34d1vm7a_



not modelled 98.4 16 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
35d1vk4a_



not modelled 98.4 14 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
36d2afba1



not modelled 98.4 16 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
37c2pkkA_



not modelled 98.3 14 PDB header:transferase
Chain: A: PDB Molecule:adenosine kinase;
PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine
38c2qcvA_



not modelled 98.3 12 PDB header:transferase
Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase;
PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution
39d1rkda_



not modelled 98.3 17 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
40c2xtbA_



not modelled 98.3 13 PDB header:transferase
Chain: A: PDB Molecule:adenosine kinase;
PDBTitle: crystal structure of trypanosoma brucei rhodesiense2 adenosine kinase complexed with activator
41c3looC_



not modelled 98.3 16 PDB header:transferase
Chain: C: PDB Molecule:anopheles gambiae adenosine kinase;
PDBTitle: crystal structure of anopheles gambiae adenosine kinase in complex2 with p1,p4-di(adenosine-5) tetraphosphate
42c2qhpA_



not modelled 98.3 12 PDB header:transferase
Chain: A: PDB Molecule:fructokinase;
PDBTitle: crystal structure of fructokinase (np_810670.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.80 a resolution
43d1bx4a_



not modelled 98.2 14 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
44c3ktnA_



not modelled 98.2 14 PDB header:transferase
Chain: A: PDB Molecule:carbohydrate kinase, pfkb family;
PDBTitle: crystal structure of a putative 2-keto-3-deoxygluconate2 kinase from enterococcus faecalis
45c3in1A_



not modelled 98.2 15 PDB header:transferase
Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh;
PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli
46d2absa1



not modelled 98.2 14 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
47c2absA_



not modelled 98.2 14 PDB header:signaling protein,transferase
Chain: A: PDB Molecule:adenosine kinase;
PDBTitle: crystal structure of t. gondii adenosine kinase complexed2 with amp-pcp
48c3b1qD_



not modelled 98.2 14 PDB header:transferase
Chain: D: PDB Molecule:ribokinase, putative;
PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine
49c3iq0B_



not modelled 98.2 18 PDB header:transferase
Chain: B: PDB Molecule:putative ribokinase ii;
PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli
50d2dcna1



not modelled 98.1 21 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
51c2nwhA_



not modelled 98.1 14 PDB header:signaling protein,transferase
Chain: A: PDB Molecule:carbohydrate kinase;
PDBTitle: carbohydrate kinase from agrobacterium tumefaciens
52c3julA_



not modelled 98.1 18 PDB header:transferase
Chain: A: PDB Molecule:lin2199 protein;
PDBTitle: crystal structure of listeria innocua d-tagatose-6-phosphate2 kinase bound with substrate
53c2varB_



not modelled 98.0 19 PDB header:transferase
Chain: B: PDB Molecule:fructokinase;
PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate
54d2fv7a1



not modelled 97.9 19 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
55c2c49A_



not modelled 97.9 16 PDB header:transferase
Chain: A: PDB Molecule:sugar kinase mj0406;
PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family
56c3kd6B_



not modelled 97.9 14 PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, pfkb family;
PDBTitle: crystal structure of nucleoside kinase from chlorobium tepidum in2 complex with amp
57c3lhxA_



not modelled 97.8 15 PDB header:transferase
Chain: A: PDB Molecule:ketodeoxygluconokinase;
PDBTitle: crystal structure of a ketodeoxygluconokinase (kdgk) from2 shigella flexneri
58d1v19a_



not modelled 97.8 16 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
59d1tyya_



not modelled 97.8 16 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
60c3go6B_



not modelled 97.6 15 PDB header:transferase
Chain: B: PDB Molecule:ribokinase rbsk;
PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp
61c3hj6B_



not modelled 97.4 17 PDB header:transferase
Chain: B: PDB Molecule:fructokinase;
PDBTitle: structure of halothermothrix orenii fructokinase (frk)
62c3i3yB_



not modelled 97.4 16 PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase;
PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae
63c3bf5A_



not modelled 97.4 11 PDB header:transferase
Chain: A: PDB Molecule:ribokinase related protein;
PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution
64c1tz6B_



not modelled 97.3 15 PDB header:transferase
Chain: B: PDB Molecule:putative sugar kinase;
PDBTitle: crystal structure of aminoimidazole riboside kinase from2 salmonella enterica complexed with aminoimidazole riboside3 and atp analog
65c3b3lC_



not modelled 97.2 15 PDB header:transferase
Chain: C: PDB Molecule:ketohexokinase;
PDBTitle: crystal structures of alternatively-spliced isoforms of human2 ketohexokinase
66c3lkiA_



not modelled 96.8 11 PDB header:transferase
Chain: A: PDB Molecule:fructokinase;
PDBTitle: crystal structure of fructokinase with bound atp from2 xylella fastidiosa
67c3gbuD_



not modelled 96.6 11 PDB header:transferase
Chain: D: PDB Molecule:uncharacterized sugar kinase ph1459;
PDBTitle: crystal structure of an uncharacterized sugar kinase ph1459 from2 pyrococcus horikoshii in complex with atp
68d1qvwa_



not modelled 92.3 14 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
69d1jaya_



not modelled 92.1 19 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
70d1uh5a_



not modelled 91.4 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
71c3trjC_



not modelled 91.4 16 PDB header:isomerase
Chain: C: PDB Molecule:phosphoheptose isomerase;
PDBTitle: structure of a phosphoheptose isomerase from francisella tularensis
72d1j6ua1



not modelled 90.8 26 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
73c2l2qA_



not modelled 89.0 16 PDB header:transferase
Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela);
PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi
74c3icrA_



not modelled 88.7 28 PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme a-disulfide reductase;
PDBTitle: crystal structure of oxidized bacillus anthracis coadr-rhd
75d1p5fa_



not modelled 88.2 14 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
76d1n1ea2



not modelled 88.2 19 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
77c3ntaA_



not modelled 88.1 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase
78d1x92a_



not modelled 88.0 14 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
79d1ydha_



not modelled 87.8 17 Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
80c2nq8B_



not modelled 87.6 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:enoyl-acyl carrier reductase;
PDBTitle: malarial enoyl acyl acp reductase bound with inh-nad adduct
81c2foiB_



not modelled 87.5 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:enoyl-acyl carrier reductase;
PDBTitle: synthesis, biological activity, and x-ray crystal structural analysis2 of diaryl ether inhibitors of malarial enoyl acp reductase.
82c2hk8B_



not modelled 86.9 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:shikimate dehydrogenase;
PDBTitle: crystal structure of shikimate dehydrogenase from aquifex2 aeolicus at 2.35 angstrom resolution
83c2yvaB_



not modelled 86.9 16 PDB header:dna binding protein
Chain: B: PDB Molecule:dnaa initiator-associating protein diaa;
PDBTitle: crystal structure of escherichia coli diaa
84c2xhzC_



not modelled 86.6 22 PDB header:isomerase
Chain: C: PDB Molecule:arabinose 5-phosphate isomerase;
PDBTitle: probing the active site of the sugar isomerase domain from e. coli2 arabinose-5-phosphate isomerase via x-ray crystallography
85c2uyyD_



not modelled 86.6 16 PDB header:cytokine
Chain: D: PDB Molecule:n-pac protein;
PDBTitle: structure of the cytokine-like nuclear factor n-pac
86c3cneD_



not modelled 86.5 16 PDB header:hydrolase
Chain: D: PDB Molecule:putative protease i;
PDBTitle: crystal structure of the putative protease i from bacteroides2 thetaiotaomicron
87c3osuA_



not modelled 86.5 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] reductase;
PDBTitle: crystal structure of the 3-oxoacyl-acyl carrier protein reductase,2 fabg, from staphylococcus aureus
88c1j6uA_



not modelled 86.1 23 PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc;
PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase2 murc (tm0231) from thermotoga maritima at 2.3 a resolution
89c1f8sA_



not modelled 86.0 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-amino acid oxidase;
PDBTitle: crystal structure of l-amino acid oxidase from calloselasma2 rhodostoma, complexed with three molecules of o-aminobenzoate.
90c3c1oA_



not modelled 86.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:eugenol synthase;
PDBTitle: the multiple phenylpropene synthases in both clarkia2 breweri and petunia hybrida represent two distinct lineages
91d1t35a_



not modelled 86.0 22 Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
92d1f0ka_



not modelled 85.8 31 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Peptidoglycan biosynthesis glycosyltransferase MurG
93c3dttA_



not modelled 85.8 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadp oxidoreductase;
PDBTitle: crystal structure of a putative f420 dependent nadp-reductase2 (arth_0613) from arthrobacter sp. fb24 at 1.70 a resolution
94d1p3da1



not modelled 85.7 12 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
95d1iuka_



not modelled 85.7 23 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
96d2bzga1



not modelled 85.7 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Thiopurine S-methyltransferase
97c4a26B_



not modelled 85.6 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative c-1-tetrahydrofolate synthase, cytoplasmic;
PDBTitle: the crystal structure of leishmania major n5,n10-2 methylenetetrahydrofolate dehydrogenase/cyclohydrolase
98c3gdfA_



not modelled 85.4 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable nadp-dependent mannitol dehydrogenase;
PDBTitle: crystal structure of the nadp-dependent mannitol dehydrogenase from2 cladosporium herbarum.
99c3d1lB_



not modelled 85.4 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative nadp oxidoreductase bf3122;
PDBTitle: crystal structure of putative nadp oxidoreductase bf3122 from2 bacteroides fragilis
100c2iyaB_



not modelled 85.2 21 PDB header:transferase
Chain: B: PDB Molecule:oleandomycin glycosyltransferase;
PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering
101c1k97A_



not modelled 85.2 15 PDB header:ligase
Chain: A: PDB Molecule:argininosuccinate synthase;
PDBTitle: crystal structure of e. coli argininosuccinate synthetase in complex2 with aspartate and citrulline
102c3fxaA_



not modelled 85.1 14 PDB header:sugar binding protein
Chain: A: PDB Molecule:sis domain protein;
PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution
103c3ia7A_



not modelled 84.8 22 PDB header:transferase
Chain: A: PDB Molecule:calg4;
PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase
104c2xagA_



not modelled 84.7 36 PDB header:transcription
Chain: A: PDB Molecule:lysine-specific histone demethylase 1;
PDBTitle: crystal structure of lsd1-corest in complex with para-bromo-2 (-)-trans-2-phenylcyclopropyl-1-amine
105c2v1dA_



not modelled 84.3 36 PDB header:oxidoreductase/repressor
Chain: A: PDB Molecule:lysine-specific histone demethylase 1;
PDBTitle: structural basis of lsd1-corest selectivity in histone h32 recognition
106c3kklA_



not modelled 84.2 15 PDB header:hydrolase
Chain: A: PDB Molecule:probable chaperone protein hsp33;
PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae
107c3shoA_



not modelled 84.1 16 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, rpir family;
PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain)
108c2hkoA_



not modelled 84.0 36 PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific histone demethylase 1;
PDBTitle: crystal structure of lsd1
109c2q4dB_



not modelled 84.0 17 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lysine decarboxylase-like protein at5g11950;
PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at5g11950
110d1b0aa1



not modelled 83.9 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
111c2ptgA_



not modelled 83.7 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:enoyl-acyl carrier reductase;
PDBTitle: crystal structure of eimeria tenella enoyl reductase
112c2yg4B_



not modelled 83.3 30 PDB header:oxidoreductase
Chain: B: PDB Molecule:putrescine oxidase;
PDBTitle: structure-based redesign of cofactor binding in putrescine2 oxidase: wild type bound to putrescine
113c3nywD_



not modelled 82.8 24 PDB header:oxidoreductase
Chain: D: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of a betaketoacyl-[acp] reductase (fabg) from2 bacteroides thetaiotaomicron
114d1gpja2



not modelled 82.7 18 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
115c3cvjB_



not modelled 82.7 11 PDB header:isomerase
Chain: B: PDB Molecule:putative phosphoheptose isomerase;
PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution
116c3ka7A_



not modelled 82.6 37 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of an oxidoreductase from methanosarcina2 mazei. northeast structural genomics consortium target id3 mar208
117c4a5oB_



not modelled 82.3 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:bifunctional protein fold;
PDBTitle: crystal structure of pseudomonas aeruginosa n5, n10-2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase (fold)
118d1jeoa_



not modelled 82.0 18 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
119d2fr1a1



not modelled 81.9 24 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
120d2jfga1



not modelled 81.9 23 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0