PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2ddmA_

Fold library id	PDB Header	Molecule	Title
c2ddmA_	PDB header: transferase	Chain: A: PDB Molecule: pyridoxine kinase;	PDBTitle: crystal structure of pyridoxal kinase from the escherichia2 coli pdxk gene at 2.1 a resolution

Links to external resources
Added to library: Tue Mar 16 14:36:24 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K S R A L Q A D I V A V Q S Q V V Y G S V G N S I A V P A I K Q N G L N V F A V P T V L L S N T P H Y D T F Y G G A I P D E W F S G Y L R A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S S S S T T T
S S
T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L Q E R D A L R Q L R A V T T G Y M G T A S Q I K I L A E W L T A L R K D H P D L L I M V D P V I G D I D S G I Y V K P D L P E A Y R Q Y L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
S
T T
T T
T T T
S
T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L P L A Q G I T P N I F E L E I L T G K N C R D L D S A I A A A K S L L S D T L K W V V V T S Q E M Q V V V V T A D S V N V I S H S R V K T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S
B T S
S S
S S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . .

Sequence D L K G T G D L F C A Q L I S G L L K G K A L T D A V H R A G L R V L E V M R Y T Q Q H E S D E L I L P P L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	S	R	A	L	Q	A	D	I	V	A	V	Q	S	Q	V	V	Y	G	S	V	G	N	S	I	A	V	P	A	I	K	Q	N	G	L	N	V	F	A	V	P	T	V	L	L	S	N	T	P	H	Y	D	T	F	Y	G	G	A	I	P	D	E	W	F	S	G	Y	L	R	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S				S									S	S	S	S	S	T											T	T												S	S		T	T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	Q	E	R	D	A	L	R	Q	L	R	A	V	T	T	G	Y	M	G	T	A	S	Q	I	K	I	L	A	E	W	L	T	A	L	R	K	D	H	P	D	L	L	I	M	V	D	P	V	I	G	D	I	D	S	G	I	Y	V	K	P	D	L	P	E	A	Y	R	Q	Y	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T			T	T										S																	T	T		T	T												T	T	T				S		T	T								T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	P	L	A	Q	G	I	T	P	N	I	F	E	L	E	I	L	T	G	K	N	C	R	D	L	D	S	A	I	A	A	A	K	S	L	L	S	D	T	L	K	W	V	V	V	T	S	Q	E	M	Q	V	V	V	V	T	A	D	S	V	N	V	I	S	H	S	R	V	K	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G		S					B									T	S			S	S														S	S																		T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Sequence	D	L	K	G	T	G	D	L	F	C	A	Q	L	I	S	G	L	L	K	G	K	A	L	T	D	A	V	H	R	A	G	L	R	V	L	E	V	M	R	Y	T	Q	Q	H	E	S	D	E	L	I	L	P	P	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T	T																								T	T		S	S