Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A9G6
DateThu Jan 5 11:10:09 GMT 2012
Unique Job IDe8fda1584905a9bc

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1dqua_
Top template information
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
Confidence and coverage
Confidence:100.0% Coverage: 93%
402 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKTRTQQIEELQKEWTQPRWEGITRPYSAEDVVKLRGSVNPECTLAQLGAAKMWRLLHGE
Secondary structure 
SS confidence 
Disorder  ????
?
?????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  SKKGYINSLGALTGGQALQQAKAGIEAVYLSGWQVAADANLAASMYPDQSLYPANSVPAV
Secondary structure 
SS confidence 
Disorder 
??????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  VERINNTFRRADQIQWSAGIEPGDPRYVDYFLPIVADAEAGFGGVLNAFELMKAMIEAGA
Secondary structure 
SS confidence 
Disorder 
???????????????????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  AAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLAADVTGVPTLLVARTDADAADL
Secondary structure 
SS confidence 
Disorder 
???????????
???
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  ITSDCDPYDSEFITGERTSEGFFRTHAGIEQAISRGLAYAPYADLVWCETSTPDLELARR
Secondary structure 
SS confidence 
Disorder  ?????
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  FAQAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIASFQQQLSDMGYKFQFITLAGIHSMWF
Secondary structure 
SS confidence 
Disorder 
?
?????
??
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  NMFDLANAYAQGEGMKHYVEKVQQPEFAAAKDGYTFVSHQQEVGTGYFDKVTTIIQGGTS
Secondary structure 
SS confidence 
Disorder 
??
?
?????
Disorder confidence 
 
   .........430....
Sequence  SVTALTGSTEESQF
Secondary structure 
SS confidence 
Disorder  ??????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1dqu chain A

3D model

Region: 5 - 418
Aligned: 402
Modelled: 412
Confidence: 100.0%
Identity: 41%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Phosphoenolpyruvate mutase/Isocitrate lyase-like

Phyre2

PDB 1igw chain A

3D model

Region: 2 - 417
Aligned: 396
Modelled: 400
Confidence: 100.0%
Identity: 100%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Phosphoenolpyruvate mutase/Isocitrate lyase-like

Phyre2

PDB 1f61 chain A

3D model

Region: 9 - 423
Aligned: 406
Modelled: 415
Confidence: 100.0%
Identity: 61%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Phosphoenolpyruvate mutase/Isocitrate lyase-like

Phyre2

PDB 3e5b chain B

3D model

Region: 19 - 416
Aligned: 382
Modelled: 391
Confidence: 100.0%
Identity: 62%
PDB header:lyase
Chain: B: PDB Molecule:isocitrate lyase;
PDBTitle: 2.4 a crystal structure of isocitrate lyase from brucella2 melitensis

Phyre2

PDB 3eoo chain L

3D model

Region: 49 - 395
Aligned: 273
Modelled: 297
Confidence: 100.0%
Identity: 32%
PDB header:lyase
Chain: L: PDB Molecule:methylisocitrate lyase;
PDBTitle: 2.9a crystal structure of methyl-isocitrate lyase from2 burkholderia pseudomallei

Phyre2

PDB 3b8i chain F

3D model

Region: 52 - 375
Aligned: 248
Modelled: 273
Confidence: 100.0%
Identity: 26%
PDB header:lyase
Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase;
PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+.

Phyre2

PDB 3ih1 chain A

3D model

Region: 47 - 395
Aligned: 272
Modelled: 296
Confidence: 100.0%
Identity: 30%
PDB header:lyase
Chain: A: PDB Molecule:methylisocitrate lyase;
PDBTitle: crystal structure of carboxyvinyl-carboxyphosphonate phosphorylmutase2 from bacillus anthracis

Phyre2

PDB 1mum chain A

3D model

Region: 50 - 395
Aligned: 272
Modelled: 283
Confidence: 100.0%
Identity: 31%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Phosphoenolpyruvate mutase/Isocitrate lyase-like

Phyre2

PDB 3fa4 chain D

3D model

Region: 45 - 417
Aligned: 281
Modelled: 323
Confidence: 100.0%
Identity: 26%
PDB header:lyase
Chain: D: PDB Molecule:2,3-dimethylmalate lyase;
PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form

Phyre2

PDB 1zlp chain A

3D model

Region: 52 - 374
Aligned: 248
Modelled: 257
Confidence: 100.0%
Identity: 29%
PDB header:lyase
Chain: A: PDB Molecule:petal death protein;
PDBTitle: petal death protein psr132 with cysteine-linked glutaraldehyde forming2 a thiohemiacetal adduct

Phyre2

PDB 3lye chain A

3D model

Region: 50 - 417
Aligned: 276
Modelled: 304
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:oxaloacetate acetyl hydrolase;
PDBTitle: crystal structure of oxaloacetate acetylhydrolase

Phyre2

PDB 2hjp chain A

3D model

Region: 50 - 374
Aligned: 246
Modelled: 271
Confidence: 100.0%
Identity: 22%
PDB header:hydrolase
Chain: A: PDB Molecule:phosphonopyruvate hydrolase;
PDBTitle: crystal structure of phosphonopyruvate hydrolase complex with2 phosphonopyruvate and mg++

Phyre2

PDB 1s2w chain A

3D model

Region: 50 - 374
Aligned: 233
Modelled: 246
Confidence: 100.0%
Identity: 24%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Phosphoenolpyruvate mutase/Isocitrate lyase-like

Phyre2

PDB 1ujq chain A

3D model

Region: 50 - 374
Aligned: 239
Modelled: 262
Confidence: 100.0%
Identity: 33%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Phosphoenolpyruvate mutase/Isocitrate lyase-like

Phyre2

PDB 2qiw chain A

3D model

Region: 51 - 370
Aligned: 248
Modelled: 263
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:pep phosphonomutase;
PDBTitle: crystal structure of a putative phosphoenolpyruvate phosphonomutase2 (ncgl1015, cgl1060) from corynebacterium glutamicum atcc 13032 at3 1.80 a resolution

Phyre2

PDB 2ze3 chain A

3D model

Region: 51 - 382
Aligned: 251
Modelled: 267
Confidence: 100.0%
Identity: 26%
PDB header:isomerase
Chain: A: PDB Molecule:dfa0005;
PDBTitle: crystal structure of dfa0005 complexed with alpha-ketoglutarate: a2 novel member of the icl/pepm superfamily from alkali-tolerant3 deinococcus ficus

Phyre2

PDB 1m3u chain A

3D model

Region: 55 - 305
Aligned: 185
Modelled: 197
Confidence: 99.9%
Identity: 21%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Ketopantoate hydroxymethyltransferase PanB

Phyre2

PDB 3ez4 chain B

3D model

Region: 55 - 305
Aligned: 166
Modelled: 179
Confidence: 99.9%
Identity: 20%
PDB header:transferase
Chain: B: PDB Molecule:3-methyl-2-oxobutanoate hydroxymethyltransferase;
PDBTitle: crystal structure of 3-methyl-2-oxobutanoate2 hydroxymethyltransferase from burkholderia pseudomallei

Phyre2

PDB 1oy0 chain A

3D model

Region: 55 - 298
Aligned: 164
Modelled: 176
Confidence: 99.8%
Identity: 25%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Ketopantoate hydroxymethyltransferase PanB

Phyre2

PDB 1o66 chain A

3D model

Region: 55 - 186
Aligned: 106
Modelled: 111
Confidence: 97.5%
Identity: 22%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Ketopantoate hydroxymethyltransferase PanB

Phyre2
1
d1dqua_
2
d1igwa_
3
d1f61a_
4
c3e5bB_
5
c3eooL_
6
c3b8iF_
7
c3ih1A_
8
d1muma_
9
c3fa4D_
10
c1zlpA_
11
c3lyeA_
12
c2hjpA_
13
d1s2wa_
14
d1ujqa_
15
c2qiwA_
16
c2ze3A_
17
d1m3ua_
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c3ez4B_
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d1oy0a_
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d1o66a_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1dqua_
100.0 41 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
2d1igwa_
100.0 100 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
3d1f61a_
100.0 61 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
4c3e5bB_
100.0 62 PDB header:lyase
Chain: B: PDB Molecule:isocitrate lyase;
PDBTitle: 2.4 a crystal structure of isocitrate lyase from brucella2 melitensis
5c3eooL_
100.0 32 PDB header:lyase
Chain: L: PDB Molecule:methylisocitrate lyase;
PDBTitle: 2.9a crystal structure of methyl-isocitrate lyase from2 burkholderia pseudomallei
6c3b8iF_
100.0 26 PDB header:lyase
Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase;
PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+.
7c3ih1A_
100.0 30 PDB header:lyase
Chain: A: PDB Molecule:methylisocitrate lyase;
PDBTitle: crystal structure of carboxyvinyl-carboxyphosphonate phosphorylmutase2 from bacillus anthracis
8d1muma_
100.0 31 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
9c3fa4D_
100.0 26 PDB header:lyase
Chain: D: PDB Molecule:2,3-dimethylmalate lyase;
PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form
10c1zlpA_
100.0 29 PDB header:lyase
Chain: A: PDB Molecule:petal death protein;
PDBTitle: petal death protein psr132 with cysteine-linked glutaraldehyde forming2 a thiohemiacetal adduct
11c3lyeA_
100.0 24 PDB header:hydrolase
Chain: A: PDB Molecule:oxaloacetate acetyl hydrolase;
PDBTitle: crystal structure of oxaloacetate acetylhydrolase
12c2hjpA_
100.0 22 PDB header:hydrolase
Chain: A: PDB Molecule:phosphonopyruvate hydrolase;
PDBTitle: crystal structure of phosphonopyruvate hydrolase complex with2 phosphonopyruvate and mg++
13d1s2wa_
100.0 24 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
14d1ujqa_
100.0 33 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
15c2qiwA_
100.0 23 PDB header:transferase
Chain: A: PDB Molecule:pep phosphonomutase;
PDBTitle: crystal structure of a putative phosphoenolpyruvate phosphonomutase2 (ncgl1015, cgl1060) from corynebacterium glutamicum atcc 13032 at3 1.80 a resolution
16c2ze3A_
100.0 26 PDB header:isomerase
Chain: A: PDB Molecule:dfa0005;
PDBTitle: crystal structure of dfa0005 complexed with alpha-ketoglutarate: a2 novel member of the icl/pepm superfamily from alkali-tolerant3 deinococcus ficus
17d1m3ua_
99.9 21 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Ketopantoate hydroxymethyltransferase PanB
18c3ez4B_
99.9 20 PDB header:transferase
Chain: B: PDB Molecule:3-methyl-2-oxobutanoate hydroxymethyltransferase;
PDBTitle: crystal structure of 3-methyl-2-oxobutanoate2 hydroxymethyltransferase from burkholderia pseudomallei
19d1oy0a_
99.8 25 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Ketopantoate hydroxymethyltransferase PanB
20d1o66a_
97.5 22 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Ketopantoate hydroxymethyltransferase PanB
21c2p10D_
not modelled 96.9 24 PDB header:hydrolase
Chain: D: PDB Molecule:mll9387 protein;
PDBTitle: crystal structure of a putative phosphonopyruvate hydrolase (mll9387)2 from mesorhizobium loti maff303099 at 2.15 a resolution
22c3si9B_
not modelled 96.7 17 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from bartonella2 henselae
23d1o5ka_
not modelled 96.7 19 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
24c3daqB_
not modelled 96.4 20 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from methicillin-2 resistant staphylococcus aureus
25c3b4uB_
not modelled 96.3 20 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58
26c3lerA_
not modelled 96.3 20 PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 campylobacter jejuni subsp. jejuni nctc 11168
27c2yxgD_
not modelled 96.3 21 PDB header:lyase
Chain: D: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa)
28c3noeA_
not modelled 96.1 22 PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from pseudomonas2 aeruginosa
29d2a6na1
not modelled 96.1 20 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
30c3g0sA_
not modelled 96.0 20 PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: dihydrodipicolinate synthase from salmonella typhimurium lt2
31c2rfgB_
not modelled 96.0 17 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from hahella2 chejuensis at 1.5a resolution
32c3cprB_
not modelled 96.0 20 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthetase;
PDBTitle: the crystal structure of corynebacterium glutamicum2 dihydrodipicolinate synthase to 2.2 a resolution
33c3h5dD_
not modelled 95.9 17 PDB header:lyase
Chain: D: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: dihydrodipicolinate synthase from drug-resistant streptococcus2 pneumoniae
34c3s5oA_
not modelled 95.9 17 PDB header:lyase
Chain: A: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase, mitochondrial;
PDBTitle: crystal structure of human 4-hydroxy-2-oxoglutarate aldolase bound to2 pyruvate
35c2r8wB_
not modelled 95.8 19 PDB header:lyase
Chain: B: PDB Molecule:agr_c_1641p;
PDBTitle: the crystal structure of dihydrodipicolinate synthase (atu0899) from2 agrobacterium tumefaciens str. c58
36c3fkkA_
not modelled 95.8 14 PDB header:lyase
Chain: A: PDB Molecule:l-2-keto-3-deoxyarabonate dehydratase;
PDBTitle: structure of l-2-keto-3-deoxyarabonate dehydratase
37c3eb2A_
not modelled 95.6 20 PDB header:lyase
Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution
38c3na8A_
not modelled 95.6 14 PDB header:lyase
Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase;
PDBTitle: crystal structure of a putative dihydrodipicolinate synthetase from2 pseudomonas aeruginosa
39d1f74a_
not modelled 95.5 15 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
40c3lciA_
not modelled 95.5 21 PDB header:lyase
Chain: A: PDB Molecule:n-acetylneuraminate lyase;
PDBTitle: the d-sialic acid aldolase mutant v251w
41d1xm3a_
not modelled 95.5 17 Fold:TIM beta/alpha-barrel
Superfamily:ThiG-like
Family:ThiG-like
42d1xxxa1
not modelled 95.4 24 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
43c3fluD_
not modelled 95.4 20 PDB header:lyase
Chain: D: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from the pathogen2 neisseria meningitidis
44c3e96B_
not modelled 95.4 19 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 bacillus clausii
45c3d0cB_
not modelled 95.3 15 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 oceanobacillus iheyensis at 1.9 a resolution
46c3pueA_
not modelled 95.3 24 PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution
47d1xkya1
not modelled 94.8 17 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
48c3qfeB_
not modelled 94.7 18 PDB header:lyase
Chain: B: PDB Molecule:putative dihydrodipicolinate synthase family protein;
PDBTitle: crystal structures of a putative dihydrodipicolinate synthase family2 protein from coccidioides immitis
49c3n2xB_
not modelled 94.5 15 PDB header:lyase
Chain: B: PDB Molecule:uncharacterized protein yage;
PDBTitle: crystal structure of yage, a prophage protein belonging to the2 dihydrodipicolinic acid synthase family from e. coli k12 in complex3 with pyruvate
50d1vr6a1
not modelled 94.4 24 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
51c1kbiB_
not modelled 94.2 24 PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome b2;
PDBTitle: crystallographic study of the recombinant flavin-binding domain of2 baker's yeast flavocytochrome b2: comparison with the intact wild-3 type enzyme
52c3bw2A_
not modelled 94.2 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:2-nitropropane dioxygenase;
PDBTitle: crystal structures and site-directed mutagenesis study of nitroalkane2 oxidase from streptomyces ansochromogenes
53c2v9dB_
not modelled 94.2 14 PDB header:lyase
Chain: B: PDB Molecule:yage;
PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12
54d1goxa_
not modelled 93.8 26 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
55c2nuxB_
not modelled 93.8 19 PDB header:lyase
Chain: B: PDB Molecule:2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate
PDBTitle: 2-keto-3-deoxygluconate aldolase from sulfolobus acidocaldarius,2 native structure in p6522 at 2.5 a resolution
56d1tb3a1
not modelled 93.6 22 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
57d1w3ia_
not modelled 93.6 16 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
58c1zfjA_
not modelled 93.6 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine monophosphate dehydrogenase;
PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes
59d1tzza1
not modelled 93.5 27 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
60d1rvka1
not modelled 93.2 17 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
61c3ffsC_
not modelled 93.1 21 PDB header:oxidoreductase
Chain: C: PDB Molecule:inosine-5-monophosphate dehydrogenase;
PDBTitle: the crystal structure of cryptosporidium parvum inosine-5'-2 monophosphate dehydrogenase
62c3sqsA_
not modelled 92.8 11 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing protein from dinoroseobacter shibae dfl 12
63c2vc6A_
not modelled 92.5 21 PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: structure of mosa from s. meliloti with pyruvate bound
64d2p10a1
not modelled 92.4 21 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Mll9387-like
65d1jcna1
not modelled 92.3 21 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
66c3bi8A_
not modelled 92.3 15 PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: structure of dihydrodipicolinate synthase from clostridium2 botulinum
67c1jcnA_
not modelled 92.2 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine monophosphate dehydrogenase i;
PDBTitle: binary complex of human type-i inosine monophosphate dehydrogenase2 with 6-cl-imp
68d2mnra1
not modelled 92.2 27 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
69c2ehhE_
not modelled 91.9 17 PDB header:lyase
Chain: E: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 aquifex aeolicus
70d1kbia1
not modelled 91.7 24 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
71d1hl2a_
not modelled 91.6 22 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
72d1zfja1
not modelled 91.3 16 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
73c2qr6A_
not modelled 91.1 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:imp dehydrogenase/gmp reductase;
PDBTitle: crystal structure of imp dehydrogenase/gmp reductase-like protein2 (np_599840.1) from corynebacterium glutamicum atcc 13032 kitasato at3 1.50 a resolution
74c3nvtA_
not modelled 91.1 16 PDB header:transferase/isomerase
Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate synthase;
PDBTitle: 1.95 angstrom crystal structure of a bifunctional 3-deoxy-7-2 phosphoheptulonate synthase/chorismate mutase (aroa) from listeria3 monocytogenes egd-e
75c3khjE_
not modelled 90.7 20 PDB header:oxidoreductase
Chain: E: PDB Molecule:inosine-5-monophosphate dehydrogenase;
PDBTitle: c. parvum inosine monophosphate dehydrogenase bound by inhibitor c64
76c1zcoA_
not modelled 90.5 21 PDB header:lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphoheptonate aldolase;
PDBTitle: crystal structure of pyrococcus furiosus 3-deoxy-d-arabino-2 heptulosonate 7-phosphate synthase
77c3rcyC_
not modelled 90.4 25 PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-like
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme-2 like protein from roseovarius sp. tm1035
78c1vs1B_
not modelled 89.8 20 PDB header:transferase
Chain: B: PDB Molecule:3-deoxy-7-phosphoheptulonate synthase;
PDBTitle: crystal structure of 3-deoxy-d-arabino-heptulosonate-7-2 phosphate synthase (dahp synthase) from aeropyrum pernix3 in complex with mn2+ and pep
79d1jr1a1
not modelled 89.6 21 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
80c2htmB_
not modelled 89.2 15 PDB header:biosynthetic protein
Chain: B: PDB Molecule:thiazole biosynthesis protein thig;
PDBTitle: crystal structure of ttha0676 from thermus thermophilus hb8
81c1vrdA_
not modelled 89.1 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine-5'-monophosphate dehydrogenase;
PDBTitle: crystal structure of inosine-5'-monophosphate dehydrogenase (tm1347)2 from thermotoga maritima at 2.18 a resolution
82c3dz1A_
not modelled 89.0 13 PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 1.87a resolution
83d1jpma1
not modelled 88.8 16 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
84c1me9A_
not modelled 88.8 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine-5'-monophosphate dehydrogenase;
PDBTitle: inosine monophosphate dehydrogenase (impdh) from2 tritrichomonas foetus with imp bound
85c3cxoA_
not modelled 88.7 19 PDB header:lyase
Chain: A: PDB Molecule:putative galactonate dehydratase;
PDBTitle: crystal structure of l-rhamnonate dehydratase from2 salmonella typhimurium complexed with mg and 3-deoxy-l-3 rhamnonate
86c2e77B_
not modelled 88.4 24 PDB header:oxidoreductase
Chain: B: PDB Molecule:lactate oxidase;
PDBTitle: crystal structure of l-lactate oxidase with pyruvate complex
87c1rvkA_
not modelled 87.9 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:isomerase/lactonizing enzyme;
PDBTitle: crystal structure of enolase agr_l_2751 from agrobacterium tumefaciens
88d2gdqa1
not modelled 87.4 16 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
89d1p4ca_
not modelled 87.1 24 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
90d1vrda1
not modelled 87.1 21 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
91c2r94B_
not modelled 86.5 22 PDB header:lyase
Chain: B: PDB Molecule:2-keto-3-deoxy-(6-phospho-)gluconate aldolase;
PDBTitle: crystal structure of kd(p)ga from t.tenax
92c3fv9D_
not modelled 86.5 13 PDB header:hydrolase
Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of putative mandelate racemase/muconatelactonizing2 enzyme from roseovarius nubinhibens ism complexed with magnesium
93c3cyjA_
not modelled 86.2 23 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-like
PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme-2 like protein from rubrobacter xylanophilus
94c2a7rD_
not modelled 86.1 14 PDB header:oxidoreductase
Chain: D: PDB Molecule:gmp reductase 2;
PDBTitle: crystal structure of human guanosine monophosphate2 reductase 2 (gmpr2)
95c2gjlA_
not modelled 86.0 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein pa1024;
PDBTitle: crystal structure of 2-nitropropane dioxygenase
96c3px5A_
not modelled 85.9 21 PDB header:metal binding protein
Chain: A: PDB Molecule:enzyme of enolase superfamily;
PDBTitle: structure of efi enolase target en500555, a putative dipeptide2 epimerase: apo structure
97c3stgA_
not modelled 85.9 17 PDB header:transferase
Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase;
PDBTitle: crystal structure of a58p, del(n59), and loop 7 truncated mutant of 3-2 deoxy-d-manno-octulosonate 8-phosphate synthase (kdo8ps) from3 neisseria meningitidis
98c3bo9B_
not modelled 85.7 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative nitroalkan dioxygenase;
PDBTitle: crystal structure of putative nitroalkan dioxygenase (tm0800) from2 thermotoga maritima at 2.71 a resolution
99c2rduA_
not modelled 85.2 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxyacid oxidase 1;
PDBTitle: crystal structure of human glycolate oxidase in complex with2 glyoxylate
100c3r2gA_
not modelled 84.9 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine 5'-monophosphate dehydrogenase;
PDBTitle: crystal structure of inosine 5' monophosphate dehydrogenase from2 legionella pneumophila
101c2a7nA_
not modelled 84.1 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:l(+)-mandelate dehydrogenase;
PDBTitle: crystal structure of the g81a mutant of the active chimera of (s)-2 mandelate dehydrogenase
102d2gl5a1
not modelled 84.0 18 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
103c2z6jB_
not modelled 83.4 26 PDB header:oxidoreductase
Chain: B: PDB Molecule:trans-2-enoyl-acp reductase ii;
PDBTitle: crystal structure of s. pneumoniae enoyl-acyl carrier2 protein reductase (fabk) in complex with an inhibitor
104c2gdqB_
not modelled 81.8 16 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:yitf;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from bacillus subtilis at 1.8 a resolution
105c2pp1C_
not modelled 81.4 27 PDB header:lyase
Chain: C: PDB Molecule:l-talarate/galactarate dehydratase;
PDBTitle: crystal structure of l-talarate/galactarate dehydratase from2 salmonella typhimurium lt2 liganded with mg and l-lyxarohydroxamate
106c3jw7E_
not modelled 81.0 23 PDB header:isomerase
Chain: E: PDB Molecule:dipeptide epimerase;
PDBTitle: crystal structure of dipeptide epimerase from enterococcus faecalis2 v583 complexed with mg and dipeptide l-ile-l-tyr
107d1y0ea_
not modelled 79.5 17 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:NanE-like
108d2chra1
not modelled 79.2 15 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
109c2hmcA_
not modelled 78.9 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: the crystal structure of dihydrodipicolinate synthase dapa from2 agrobacterium tumefaciens
110c3pg8B_
not modelled 78.3 22 PDB header:transferase
Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: truncated form of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase2 from thermotoga maritima
111d2a21a1
not modelled 76.8 18 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
112d1yeya1
not modelled 76.7 25 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
113c2qjjC_
not modelled 76.3 20 PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of d-mannonate dehydratase from novosphingobium2 aromaticivorans
114c2qdeA_
not modelled 76.3 30 PDB header:lyase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing family2 protein from azoarcus sp. ebn1
115c3dipA_
not modelled 76.2 16 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of an enolase protein from the2 environmental genome shotgun sequencing of the sargasso sea
116d1muca1
not modelled 75.5 17 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
117c2oz8B_
not modelled 75.3 19 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:mll7089 protein;
PDBTitle: crystal structure of putative mandelate racemase from mesorhizobium2 loti
118c2cdh1_
not modelled 74.9 25 PDB header:transferase
Chain: 1: PDB Molecule:enoyl reductase;
PDBTitle: architecture of the thermomyces lanuginosus fungal fatty2 acid synthase at 5 angstrom resolution.
119c3t8qA_
not modelled 74.9 22 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 family protein from hoeflea phototrophica
120c3q45E_
not modelled 71.6 23 PDB header:isomerase
Chain: E: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family;
PDBTitle: crystal structure of dipeptide epimerase from cytophaga hutchinsonii2 complexed with mg and dipeptide d-ala-l-val

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0