Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	T	H	L	V	W	F	R	Q	D	L	R	L	H	D	N	L	A	L	A	A	A	C	R	N	S	S	A	R	V	L	A	L	Y	I	A	T	P	R	Q	W	A	T	H	N	M	S	P	R	Q	A	E	L	I	N	A	Q	L	N
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	L	Q	I	A	L	A	E	K	G	I	P	L	L	F	R	E	V	D	D	F	V	A	S	V	E	I	V	K	Q	V	C	A	E	N	S	V	T	H	L	F	Y	N	Y	Q	Y	E	V	N	E	R	A	R	D	V	E	V	E	R	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	R	N	V	V	C	E	G	F	D	D	S	V	I	L	P	P	G	A	V	M	T	G	N	H	E	M	Y	K	V	F	T	P	F	K	N	A	W	L	K	R	L	R	E	G	M	P	E	C	V	A	A	P	K	V	R	S	S	G	S
Secondary structure
SS confidence
Disorder																																																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	E	P	S	P	S	I	T	L	N	Y	P	R	Q	S	F	D	T	A	H	F	P	V	E	E	K	A	A	I	A	Q	L	R	Q	F	C	Q	N	G	A	G	E	Y	E	Q	Q	R	D	F	P	A	V	E	G	T	S	R	L	S	A
Secondary structure
SS confidence
Disorder													?	?	?	?	?																										?	?	?	?	?		?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	L	A	T	G	G	L	S	P	R	Q	C	L	H	R	L	L	A	E	Q	P	Q	A	L	D	G	G	A	G	S	V	W	L	N	E	L	I	W	R	E	F	Y	R	H	L	I	T	Y	H	P	S	L	C	K	H	R	P	F	I	A
Secondary structure
SS confidence
Disorder																						?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		W	T	D	R	V	Q	W	Q	S	N	P	A	H	L	Q	A	W	Q	E	G	K	T	G	Y	P	I	V	D	A	A	M	R	Q	L	N	S	T	G	W	M	H	N	R	L	R	M	I	T	A	S	F	L	V	K	D	L	L	I	D	W
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		R	E	G	E	R	Y	F	M	S	Q	L	I	D	G	D	L	A	A	N	N	G	G	W	Q	W	A	A	S	T	G	T	D	A	A	P	Y	F	R	I	F	N	P	T	T	Q	G	E	K	F	D	H	E	G	E	F	I	R	Q	W	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Sequence		P	E	L	R	D	V	P	G	K	V	V	H	E	P	W	K	W	A	Q	K	A	G	V	T	L	D	Y	P	Q	P	I	V	E	H	K	E	A	R	V	Q	T	L	A	A	Y	E	A	A	R	K	G	K
Secondary structure
SS confidence
Disorder																				?	?	?	?	?	?	?																									?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1dnp chain A Region: 2 - 470 Aligned: 469 Modelled: 469 Confidence: 100.0% Identity: 100% PDB header:lyase (carbon-carbon) Chain: A: PDB Molecule:dna photolyase; PDBTitle: structure of deoxyribodipyrimidine photolyase Phyre2 PDB 3fy4 chain C Region: 2 - 470 Aligned: 462 Modelled: 469 Confidence: 100.0% Identity: 27% PDB header:lyase Chain: C: PDB Molecule:6-4 photolyase; PDBTitle: (6-4) photolyase crystal structure Phyre2 PDB 1u3c chain A Region: 4 - 472 Aligned: 463 Modelled: 469 Confidence: 100.0% Identity: 29% PDB header:signaling protein Chain: A: PDB Molecule:cryptochrome 1 apoprotein; PDBTitle: crystal structure of the phr domain of cryptochrome 1 from2 arabidopsis thaliana Phyre2 PDB 3cvy chain A Region: 2 - 471 Aligned: 464 Modelled: 470 Confidence: 100.0% Identity: 28% PDB header:lyase/dna Chain: A: PDB Molecule:re11660p; PDBTitle: drosophila melanogaster (6-4) photolyase bound to repaired2 ds dna Phyre2 PDB 1tez chain B Region: 2 - 471 Aligned: 460 Modelled: 470 Confidence: 100.0% Identity: 37% PDB header:lyase/dna Chain: B: PDB Molecule:deoxyribodipyrimidine photolyase; PDBTitle: complex between dna and the dna photolyase from anacystis nidulans Phyre2 PDB 1np7 chain A Region: 1 - 463 Aligned: 456 Modelled: 463 Confidence: 100.0% Identity: 30% PDB header:lyase Chain: A: PDB Molecule:dna photolyase; PDBTitle: crystal structure analysis of synechocystis sp. pcc6803 cryptochrome Phyre2 PDB 3tvs chain A Region: 3 - 472 Aligned: 466 Modelled: 470 Confidence: 100.0% Identity: 24% PDB header:signaling protein Chain: A: PDB Molecule:cryptochrome-1; PDBTitle: structure of full-length drosophila cryptochrome Phyre2 PDB 2j4d chain A Region: 3 - 456 Aligned: 439 Modelled: 450 Confidence: 100.0% Identity: 26% PDB header:dna-binding protein Chain: A: PDB Molecule:cryptochrome dash; PDBTitle: cryptochrome 3 from arabidopsis thaliana Phyre2 PDB 2e0i chain D Region: 1 - 469 Aligned: 426 Modelled: 469 Confidence: 100.0% Identity: 34% PDB header:lyase Chain: D: PDB Molecule:432aa long hypothetical deoxyribodipyrimidine photolyase; PDBTitle: crystal structure of archaeal photolyase from sulfolobus tokodaii with2 two fad molecules: implication of a novel light-harvesting cofactor Phyre2 PDB 1iqr chain A Region: 4 - 466 Aligned: 412 Modelled: 444 Confidence: 100.0% Identity: 36% PDB header:lyase Chain: A: PDB Molecule:photolyase; PDBTitle: crystal structure of dna photolyase from thermus2 thermophilus Phyre2 PDB 2xrz chain A Region: 4 - 419 Aligned: 406 Modelled: 406 Confidence: 100.0% Identity: 22% PDB header:lyase/dna Chain: A: PDB Molecule:deoxyribodipyrimidine photolyase; PDBTitle: x-ray structure of archaeal class ii cpd photolyase from2 methanosarcina mazei in complex with intact cpd-lesion Phyre2 PDB 3umv chain B Region: 4 - 422 Aligned: 406 Modelled: 419 Confidence: 100.0% Identity: 21% PDB header:lyase Chain: B: PDB Molecule:deoxyribodipyrimidine photo-lyase; PDBTitle: eukaryotic class ii cpd photolyase structure reveals a basis for2 improved uv-tolerance in plants Phyre2 PDB 1dnp chain A domain 1 Region: 202 - 470 Aligned: 269 Modelled: 269 Confidence: 100.0% Identity: 100% Fold: Cryptochrome/photolyase FAD-binding domain Superfamily: Cryptochrome/photolyase FAD-binding domain Family: Cryptochrome/photolyase FAD-binding domain Phyre2 PDB 1u3d chain A domain 1 Region: 201 - 472 Aligned: 271 Modelled: 272 Confidence: 100.0% Identity: 33% Fold: Cryptochrome/photolyase FAD-binding domain Superfamily: Cryptochrome/photolyase FAD-binding domain Family: Cryptochrome/photolyase FAD-binding domain Phyre2 PDB 1owl chain A domain 1 Region: 201 - 471 Aligned: 266 Modelled: 271 Confidence: 100.0% Identity: 48% Fold: Cryptochrome/photolyase FAD-binding domain Superfamily: Cryptochrome/photolyase FAD-binding domain Family: Cryptochrome/photolyase FAD-binding domain Phyre2 PDB 1np7 chain A domain 1 Region: 194 - 463 Aligned: 268 Modelled: 270 Confidence: 100.0% Identity: 34% Fold: Cryptochrome/photolyase FAD-binding domain Superfamily: Cryptochrome/photolyase FAD-binding domain Family: Cryptochrome/photolyase FAD-binding domain Phyre2 PDB 2j07 chain A domain 1 Region: 199 - 456 Aligned: 233 Modelled: 239 Confidence: 100.0% Identity: 45% Fold: Cryptochrome/photolyase FAD-binding domain Superfamily: Cryptochrome/photolyase FAD-binding domain Family: Cryptochrome/photolyase FAD-binding domain Phyre2 PDB 1dnp chain A domain 2 Region: 2 - 201 Aligned: 200 Modelled: 200 Confidence: 100.0% Identity: 100% Fold: Cryptochrome/photolyase, N-terminal domain Superfamily: Cryptochrome/photolyase, N-terminal domain Family: Cryptochrome/photolyase, N-terminal domain Phyre2 PDB 1owl chain A domain 2 Region: 2 - 204 Aligned: 198 Modelled: 203 Confidence: 100.0% Identity: 23% Fold: Cryptochrome/photolyase, N-terminal domain Superfamily: Cryptochrome/photolyase, N-terminal domain Family: Cryptochrome/photolyase, N-terminal domain Phyre2 PDB 1u3d chain A domain 2 Region: 4 - 179 Aligned: 171 Modelled: 176 Confidence: 100.0% Identity: 24% Fold: Cryptochrome/photolyase, N-terminal domain Superfamily: Cryptochrome/photolyase, N-terminal domain Family: Cryptochrome/photolyase, N-terminal domain Phyre2 1 c1dnpA_ 2 c3fy4C_ 3 c1u3cA_ 4 c3cvyA_ 5 c1tezB_ 6 c1np7A_ 7 c3tvsA_ 8 c2j4dA_ 9 c2e0iD_ 10 c1iqrA_ 11 c2xrzA_ 12 c3umvB_ 13 d1dnpa1 14 d1u3da1 15 d1owla1 16 d1np7a1 17 d2j07a1 18 d1dnpa2 19 d1owla2 20 d1u3da2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1dnpA_ 100.0 100 PDB header:lyase (carbon-carbon) Chain: A: PDB Molecule:dna photolyase; PDBTitle: structure of deoxyribodipyrimidine photolyase 2 c3fy4C_ 100.0 27 PDB header:lyase Chain: C: PDB Molecule:6-4 photolyase; PDBTitle: (6-4) photolyase crystal structure 3 c1u3cA_ 100.0 29 PDB header:signaling protein Chain: A: PDB Molecule:cryptochrome 1 apoprotein; PDBTitle: crystal structure of the phr domain of cryptochrome 1 from2 arabidopsis thaliana 4 c3cvyA_ 100.0 28 PDB header:lyase/dna Chain: A: PDB Molecule:re11660p; PDBTitle: drosophila melanogaster (6-4) photolyase bound to repaired2 ds dna 5 c1tezB_ 100.0 37 PDB header:lyase/dna Chain: B: PDB Molecule:deoxyribodipyrimidine photolyase; PDBTitle: complex between dna and the dna photolyase from anacystis nidulans 6 c1np7A_ 100.0 30 PDB header:lyase Chain: A: PDB Molecule:dna photolyase; PDBTitle: crystal structure analysis of synechocystis sp. pcc6803 cryptochrome 7 c3tvsA_ 100.0 24 PDB header:signaling protein Chain: A: PDB Molecule:cryptochrome-1; PDBTitle: structure of full-length drosophila cryptochrome 8 c2j4dA_ 100.0 26 PDB header:dna-binding protein Chain: A: PDB Molecule:cryptochrome dash; PDBTitle: cryptochrome 3 from arabidopsis thaliana 9 c2e0iD_ 100.0 34 PDB header:lyase Chain: D: PDB Molecule:432aa long hypothetical deoxyribodipyrimidine photolyase; PDBTitle: crystal structure of archaeal photolyase from sulfolobus tokodaii with2 two fad molecules: implication of a novel light-harvesting cofactor 10 c1iqrA_ 100.0 36 PDB header:lyase Chain: A: PDB Molecule:photolyase; PDBTitle: crystal structure of dna photolyase from thermus2 thermophilus 11 c2xrzA_ 100.0 22 PDB header:lyase/dna Chain: A: PDB Molecule:deoxyribodipyrimidine photolyase; PDBTitle: x-ray structure of archaeal class ii cpd photolyase from2 methanosarcina mazei in complex with intact cpd-lesion 12 c3umvB_ 100.0 21 PDB header:lyase Chain: B: PDB Molecule:deoxyribodipyrimidine photo-lyase; PDBTitle: eukaryotic class ii cpd photolyase structure reveals a basis for2 improved uv-tolerance in plants 13 d1dnpa1 100.0 100 Fold:Cryptochrome/photolyase FAD-binding domain Superfamily:Cryptochrome/photolyase FAD-binding domain Family:Cryptochrome/photolyase FAD-binding domain 14 d1u3da1 100.0 33 Fold:Cryptochrome/photolyase FAD-binding domain Superfamily:Cryptochrome/photolyase FAD-binding domain Family:Cryptochrome/photolyase FAD-binding domain 15 d1owla1 100.0 48 Fold:Cryptochrome/photolyase FAD-binding domain Superfamily:Cryptochrome/photolyase FAD-binding domain Family:Cryptochrome/photolyase FAD-binding domain 16 d1np7a1 100.0 34 Fold:Cryptochrome/photolyase FAD-binding domain Superfamily:Cryptochrome/photolyase FAD-binding domain Family:Cryptochrome/photolyase FAD-binding domain 17 d2j07a1 100.0 45 Fold:Cryptochrome/photolyase FAD-binding domain Superfamily:Cryptochrome/photolyase FAD-binding domain Family:Cryptochrome/photolyase FAD-binding domain 18 d1dnpa2 100.0 100 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 19 d1owla2 100.0 23 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 20 d1u3da2 100.0 24 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 21 d1np7a2 not modelled 100.0 23 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 22 d2j07a2 not modelled 100.0 26 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 23 c2gvsA_ not modelled 75.2 15 PDB header:lipid binding protein Chain: A: PDB Molecule:chemosensory protein csp-sg4; PDBTitle: nmr solution structure of cspsg4 24 d1n8va_ not modelled 72.0 17 Fold:alpha-alpha superhelix Superfamily:Chemosensory protein Csp2 Family:Chemosensory protein Csp2 25 d1kx9b_ not modelled 68.0 17 Fold:alpha-alpha superhelix Superfamily:Chemosensory protein Csp2 Family:Chemosensory protein Csp2 26 c1ul1Y_ not modelled 67.8 10 PDB header:hydrolase/dna binding protein Chain: Y: PDB Molecule:flap endonuclease-1; PDBTitle: crystal structure of the human fen1-pcna complex 27 c3obkH_ not modelled 49.4 18 PDB header:lyase Chain: H: PDB Molecule:delta-aminolevulinic acid dehydratase; PDBTitle: crystal structure of delta-aminolevulinic acid dehydratase2 (porphobilinogen synthase) from toxoplasma gondii me49 in complex3 with the reaction product porphobilinogen 28 d1ul1x2 not modelled 32.6 14 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 29 c3lgbB_ not modelled 30.6 12 PDB header:transferase Chain: B: PDB Molecule:dna primase large subunit; PDBTitle: crystal structure of the fe-s domain of the yeast dna primase 30 c2l06A_ not modelled 29.3 19 PDB header:protein binding Chain: A: PDB Molecule:phycobilisome lcm core-membrane linker polypeptide; PDBTitle: solution nmr structure of the pbs linker polypeptide domain (fragment2 254-400) of phycobilisome linker protein apce from synechocystis sp.3 pcc 6803. northeast structural genomics consortium target sgr209c 31 c3oryA_ not modelled 27.2 11 PDB header:hydrolase Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of flap endonuclease 1 from hyperthermophilic2 archaeon desulfurococcus amylolyticus 32 c2pbyB_ not modelled 25.9 12 PDB header:hydrolase Chain: B: PDB Molecule:glutaminase; PDBTitle: probable glutaminase from geobacillus kaustophilus hta426 33 d1l6sa_ not modelled 24.2 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 34 c2pfsA_ not modelled 23.1 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea 35 c2l3wA_ not modelled 22.8 17 PDB header:photosynthesis Chain: A: PDB Molecule:phycobilisome rod linker polypeptide; PDBTitle: solution nmr structure of the pbs linker domain of phycobilisome rod2 linker polypeptide from synechococcus elongatus, northeast structural3 genomics consortium target snr168a 36 d1u7ia_ not modelled 22.5 13 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:3-demethylubiquinone-9 3-methyltransferase 37 c1a77A_ not modelled 21.3 13 PDB header:5'-3' exo/endo nuclease Chain: A: PDB Molecule:flap endonuclease-1 protein; PDBTitle: flap endonuclease-1 from methanococcus jannaschii 38 d2d13a1 not modelled 20.0 20 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 39 c3mwdA_ not modelled 19.9 13 PDB header:transferase Chain: A: PDB Molecule:atp-citrate synthase; PDBTitle: truncated human atp-citrate lyase with citrate bound 40 c2ky4A_ not modelled 19.9 13 PDB header:photosynthesis Chain: A: PDB Molecule:phycobilisome linker polypeptide; PDBTitle: solution nmr structure of the pbs linker domain of phycobilisome2 linker polypeptide from anabaena sp. northeast structural genomics3 consortium target nsr123e 41 d1gzga_ not modelled 19.3 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 42 c3odhB_ not modelled 17.9 47 PDB header:hydrolase/dna Chain: B: PDB Molecule:okrai endonuclease; PDBTitle: structure of okrai/dna complex 43 d1k8kd2 not modelled 17.8 40 Fold:Secretion chaperone-like Superfamily:Arp2/3 complex subunits Family:Arp2/3 complex subunits 44 c2z86D_ not modelled 17.4 12 PDB header:transferase Chain: D: PDB Molecule:chondroitin synthase; PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp 45 c2izoA_ not modelled 16.7 13 PDB header:hydrolase Chain: A: PDB Molecule:flap structure-specific endonuclease; PDBTitle: structure of an archaeal pcna1-pcna2-fen1 complex 46 c2p9lD_ not modelled 16.4 40 PDB header:structural protein Chain: D: PDB Molecule:actin-related protein 2/3 complex subunit 2; PDBTitle: crystal structure of bovine arp2/3 complex 47 d1b43a2 not modelled 15.1 16 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 48 d1zela1 not modelled 14.3 46 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Rv2827c N-terminal domain-like 49 c3dwlI_ not modelled 14.2 40 PDB header:structural protein Chain: I: PDB Molecule:actin-related protein 2/3 complex subunit 2; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit 50 d2bdua1 not modelled 14.1 16 Fold:HAD-like Superfamily:HAD-like Family:Pyrimidine 5'-nucleotidase (UMPH-1) 51 d2fsqa1 not modelled 13.2 32 Fold:LigT-like Superfamily:LigT-like Family:Atu0111-like 52 d2b8ea1 not modelled 13.1 14 Fold:HAD-like Superfamily:HAD-like Family:Meta-cation ATPase, catalytic domain P 53 d2vkqa1 not modelled 11.4 13 Fold:HAD-like Superfamily:HAD-like Family:Pyrimidine 5'-nucleotidase (UMPH-1) 54 c2qqcC_ not modelled 11.3 13 PDB header:lyase Chain: C: PDB Molecule:pyruvoyl-dependent arginine decarboxylase (ec PDBTitle: e109q mutant of pyruvoyl-dependent arginine decarboxylase2 from methanococcus jannashii 55 c1b43A_ not modelled 10.0 13 PDB header:transferase Chain: A: PDB Molecule:protein (fen-1); PDBTitle: fen-1 from p. furiosus 56 d1nyna_ not modelled 9.2 0 Fold:FYSH domain Superfamily:FYSH domain Family:Hypothetical protein Yhr087W 57 c3ew8A_ not modelled 9.1 16 PDB header:hydrolase Chain: A: PDB Molecule:histone deacetylase 8; PDBTitle: crystal structure analysis of human hdac8 d101l variant 58 d1t64a_ not modelled 9.0 16 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Histone deacetylase, HDAC 59 d1sgma1 not modelled 9.0 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 60 d1pv8a_ not modelled 8.4 13 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 61 d2ipqx1 not modelled 8.2 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:STY4665 C-terminal domain-like 62 d2vkva1 not modelled 8.1 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 63 d1evsa_ not modelled 8.0 17 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Long-chain cytokines 64 d1ru8a_ not modelled 7.7 22 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 65 d1b74a2 not modelled 7.5 25 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 66 d2dy1a3 not modelled 7.2 27 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 67 d2bv3a3 not modelled 7.1 50 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 68 d2o7ta1 not modelled 6.8 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 69 c3l9qB_ not modelled 6.7 21 PDB header:transferase Chain: B: PDB Molecule:dna primase large subunit; PDBTitle: crystal structure of human polymerase alpha-primase p58 iron-sulfur2 cluster domain 70 c1p4eB_ not modelled 6.5 30 PDB header:dna binding protein/recombination/dna Chain: B: PDB Molecule:recombinase flp protein; PDBTitle: flpe w330f mutant-dna holliday junction complex 71 c3q8lA_ not modelled 6.2 20 PDB header:hydrolase/dna Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+ 72 c2lmdA_ not modelled 6.2 22 PDB header:transcription Chain: A: PDB Molecule:prospero homeobox protein 1; PDBTitle: minimal constraints solution nmr structure of prospero homeobox2 protein 1 from homo sapiens, northeast structural genomics consortium3 target hr4660b 73 c2ld7A_ not modelled 6.1 28 PDB header:transcription Chain: A: PDB Molecule:histone deacetylase complex subunit sap30; PDBTitle: solution structure of the msin3a pah3-sap30 sid complex 74 d1g8fa3 not modelled 6.1 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ATP sulfurylase C-terminal domain 75 c1rxvA_ not modelled 5.8 11 PDB header:hydrolase/dna Chain: A: PDB Molecule:flap structure-specific endonuclease; PDBTitle: crystal structure of a. fulgidus fen-1 bound to dna 76 c3lklB_ not modelled 5.5 15 PDB header:transport protein Chain: B: PDB Molecule:antisigma-factor antagonist stas; PDBTitle: crystal structure of the c-terminal domain of anti-sigma factor2 antagonist stas from rhodobacter sphaeroides 77 d2i10a1 not modelled 5.5 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 78 c3dloC_ not modelled 5.2 8 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:universal stress protein; PDBTitle: structure of universal stress protein from archaeoglobus fulgidus 79 c3j09A_ not modelled 5.1 13 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0