PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2l06A_

Fold library id	PDB Header	Molecule	Title
c2l06A_	PDB header: protein binding	Chain: A: PDB Molecule: phycobilisome lcm core-membrane linker polypeptide;	PDBTitle: solution nmr structure of the pbs linker polypeptide domain of2 phycobilisome linker protein apce from synechocystis sp. northeast3 structural genomics consortium target sgr209c

Links to external resources
Added to library: Sun Aug 29 00:29:35 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P Q S Y F N A A A K R Q K Y A M K P G L S A L E K N A V I K A A Y R Q I F E R D I T K A Y S Q S I S Y L E S Q V R N G D I S M K E F V R R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S
S
B
S S
S S S
T T S
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A K S P L Y R K Q F F E P F I N S R A L E L A F R H I L G R G P S S R E E V Q K Y F S I V S S G G L P A L V D A L V D S Q E Y A D Y F G E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S T T T T S
T S S
S T
T
T T
S S

. . . . . . . . . 150 . . . . .

Sequence T V P Y L R G L E H H H H H H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	Q	S	Y	F	N	A	A	A	K	R	Q	K	Y	A	M	K	P	G	L	S	A	L	E	K	N	A	V	I	K	A	A	Y	R	Q	I	F	E	R	D	I	T	K	A	Y	S	Q	S	I	S	Y	L	E	S	Q	V	R	N	G	D	I	S	M	K	E	F	V	R	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T			S				S				B			S	S																		S	S	S				T	T	S		T												T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	K	S	P	L	Y	R	K	Q	F	F	E	P	F	I	N	S	R	A	L	E	L	A	F	R	H	I	L	G	R	G	P	S	S	R	E	E	V	Q	K	Y	F	S	I	V	S	S	G	G	L	P	A	L	V	D	A	L	V	D	S	Q	E	Y	A	D	Y	F	G	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	S							T	T	T	T	S														T	S	S				S														T											T							T	T		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Sequence	T	V	P	Y	L	R	G	L	E	H	H	H	H	H	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B				T	T