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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3ew8A_

Fold library idPDB HeaderMoleculeTitle
c3ew8A_PDB header: hydrolaseChain: A: PDB Molecule: histone deacetylase 8;PDBTitle: crystal structure analysis of human hdac8 d101l variant


Added to library: Tue Mar 16 12:54:51 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVS
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Known secondary structure (DSSP)




TT
TTSTTTTGGGGS





TTTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence QEGEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLG
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Known secondary structure (DSSP)


S
SSSS


TTTTS
STT


TT
BTTB
BTTBSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence ILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPI
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Known secondary structure (DSSP) TTT
S

SSS

TTT
SS

TT
TT



TT



GGGTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence QDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLIL
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Known secondary structure (DSSP)
TT



S

STTBTT
TT



B
TT

 .........290.........300.........310.........320.........330.........340.........350
Sequence GGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKG
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Known secondary structure (DSSP)




ST



SB



TTGGGGTTT
BS




S





 .......
Sequence NLKHVVI
Predicted secondary structure

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Known secondary structure (DSSP) TT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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