Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	I	K	T	S	N	T	D	F	K	T	R	I	R	Q	Q	I	E	D	P	I	M	R	K	A	V	A	N	A	Q	Q	R	I	G	A	N	R	Q	K	M	V	D	E	L	G	H	W	E	E	W	R	D	R	A	A	Q	I	R	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?											?																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		H	V	L	S	N	L	D	A	Y	L	Y	Q	L	S	E	K	V	T	Q	N	G	G	H	V	Y	F	A	R	T	K	E	D	A	T	R	Y	I	L	Q	V	A	Q	R	K	N	A	R	K	V	V	K	S	K	S	M	V	T	E	E	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	V	N	H	V	L	Q	D	A	G	I	Q	V	I	E	T	D	L	G	E	Y	I	L	Q	L	D	Q	D	P	P	S	H	V	V	V	P	A	I	H	K	D	R	H	Q	I	R	R	V	L	H	E	R	L	G	Y	E	G	P	E	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	E	A	M	T	L	F	I	R	Q	K	I	R	E	D	F	L	S	A	E	I	G	I	T	G	C	N	F	A	V	A	E	T	G	S	V	C	L	V	T	N	E	G	N	A	R	M	C	T	T	L	P	K	T	H	I	A	V	M	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		M	E	R	I	A	P	T	F	A	E	V	D	V	L	I	T	M	L	A	R	S	A	V	G	A	R	L	T	G	Y	N	T	W	L	T	G	P	R	E	A	G	H	V	D	G	P	E	E	F	H	L	V	I	V	D	N	G	R	S	E
Secondary structure
SS confidence
Disorder																																								?																	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		V	L	A	S	E	F	R	D	V	L	R	C	I	R	C	G	A	C	M	N	T	C	P	A	Y	R	H	I	G	G	H	G	Y	G	S	I	Y	P	G	P	I	G	A	V	I	S	P	L	L	G	G	Y	K	D	F	K	D	L	P	Y
Secondary structure
SS confidence
Disorder		?																													?	?	?	?	?	?	?	?	?	?							?	?		?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		A	C	S	L	C	T	A	C	D	N	V	C	P	V	R	I	P	L	S	K	L	I	L	R	H	R	R	V	M	A	E	K	G	I	T	A	K	A	E	Q	R	A	I	K	M	F	A	Y	A	N	S	H	P	G	L	W	K	V	G	M
Secondary structure
SS confidence
Disorder																																	?	?	?	?	?	?																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Sequence		M	A	G	A	H	A	A	S	W	F	I	N	G	G	K	T	P	L	K	F	G	A	I	S	D	W	M	E	A	R	D	L	P	E	A	D	G	E	S	F	R	S	W	F	K	K	H	Q	A	Q	E	K	K	N	G
Secondary structure
SS confidence
Disorder			?	?				?	?	?	?	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?			?														?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2g40 chain A Region: 67 - 294 Aligned: 158 Modelled: 168 Confidence: 100.0% Identity: 25% PDB header:unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a duf162 family protein (dr_1909) from2 deinococcus radiodurans at 1.70 a resolution Phyre2 PDB 2g40 chain A domain 1 Region: 67 - 294 Aligned: 158 Modelled: 168 Confidence: 100.0% Identity: 25% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: YkgG-like Phyre2 PDB 2b76 chain N Region: 306 - 400 Aligned: 89 Modelled: 95 Confidence: 99.4% Identity: 20% PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation Phyre2 PDB 2h89 chain B Region: 306 - 393 Aligned: 85 Modelled: 88 Confidence: 99.3% Identity: 26% PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound Phyre2 PDB 1nek chain B domain 1 Region: 311 - 393 Aligned: 80 Modelled: 83 Confidence: 99.3% Identity: 24% Fold: Globin-like Superfamily: alpha-helical ferredoxin Family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain Phyre2 PDB 1nek chain B Region: 304 - 393 Aligned: 87 Modelled: 90 Confidence: 99.3% Identity: 22% PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound Phyre2 PDB 2bs2 chain B domain 1 Region: 304 - 393 Aligned: 90 Modelled: 90 Confidence: 99.2% Identity: 24% Fold: Globin-like Superfamily: alpha-helical ferredoxin Family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain Phyre2 PDB 2bs2 chain E Region: 306 - 393 Aligned: 88 Modelled: 88 Confidence: 99.2% Identity: 24% PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes Phyre2 PDB 1kf6 chain B domain 1 Region: 311 - 399 Aligned: 83 Modelled: 89 Confidence: 99.2% Identity: 19% Fold: Globin-like Superfamily: alpha-helical ferredoxin Family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain Phyre2 PDB 3cf4 chain A Region: 307 - 410 Aligned: 92 Modelled: 92 Confidence: 99.1% Identity: 23% PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex Phyre2 PDB 2c42 chain A domain 5 Region: 311 - 377 Aligned: 65 Modelled: 67 Confidence: 98.0% Identity: 22% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 3c8y chain A domain 3 Region: 311 - 375 Aligned: 58 Modelled: 65 Confidence: 97.8% Identity: 26% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1gx7 chain A Region: 311 - 376 Aligned: 47 Modelled: 47 Confidence: 97.6% Identity: 36% PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase Phyre2 PDB 1xer chain A Region: 311 - 375 Aligned: 53 Modelled: 65 Confidence: 97.6% Identity: 34% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Archaeal ferredoxins Phyre2 PDB 2c3y chain A Region: 311 - 375 Aligned: 47 Modelled: 47 Confidence: 97.5% Identity: 40% PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus Phyre2 PDB 2fug chain 9 domain 1 Region: 311 - 375 Aligned: 60 Modelled: 65 Confidence: 97.5% Identity: 25% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2fug chain G Region: 311 - 375 Aligned: 60 Modelled: 65 Confidence: 97.5% Identity: 25% PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Phyre2 PDB 1c4c chain A Region: 311 - 386 Aligned: 69 Modelled: 76 Confidence: 97.4% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum Phyre2 PDB 1hfe chain L Region: 311 - 375 Aligned: 46 Modelled: 46 Confidence: 97.4% Identity: 37% PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans Phyre2 PDB 1gth chain D Region: 311 - 375 Aligned: 46 Modelled: 46 Confidence: 97.4% Identity: 41% PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Phyre2 PDB 2v4j chain B domain 1 Region: 275 - 323 Aligned: 36 Modelled: 36 Confidence: 81.5% Identity: 33% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 1 c2g40A_ 2 d2g40a1 3 c2b76N_ 4 c2h89B_ 5 d1nekb1 6 c1nekB_ 7 d2bs2b1 8 c2bs2E_ 9 d1kf6b1 10 c3cf4A_ 11 d2c42a5 12 d3c8ya3 13 c1gx7A_ 14 d1xera_ 15 c2c3yA_ 16 d2fug91 17 c2fugG_ 18 c1c4cA_ 19 c1hfeL_ 20 c1gthD_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 d2v4jb1 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2g40A_ 100.0 25 PDB header:unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a duf162 family protein (dr_1909) from2 deinococcus radiodurans at 1.70 a resolution 2 d2g40a1 100.0 25 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:YkgG-like 3 c2b76N_ 99.4 20 PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation 4 c2h89B_ 99.3 26 PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound 5 d1nekb1 99.3 24 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 6 c1nekB_ 99.3 22 PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound 7 d2bs2b1 99.2 24 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 8 c2bs2E_ 99.2 24 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes 9 d1kf6b1 99.2 19 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 10 c3cf4A_ 99.1 23 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 11 d2c42a5 98.0 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 12 d3c8ya3 97.8 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 13 c1gx7A_ 97.6 36 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase 14 d1xera_ 97.6 34 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Archaeal ferredoxins 15 c2c3yA_ 97.5 40 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus 16 d2fug91 97.5 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 17 c2fugG_ 97.5 25 PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 18 c1c4cA_ 97.4 20 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 19 c1hfeL_ 97.4 37 PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans 20 c1gthD_ 97.4 41 PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil 21 d1gtea5 not modelled 97.3 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 22 d1jb0c_ not modelled 97.2 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 23 c2gmhA_ not modelled 97.2 20 PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone 24 d2fug34 not modelled 97.1 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 25 d7fd1a_ not modelled 97.0 39 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 26 d1hfel2 not modelled 97.0 37 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 27 c2fugC_ not modelled 97.0 26 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 28 d1clfa_ not modelled 96.9 41 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 29 c1kqfB_ not modelled 96.9 29 PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli 30 d1rgva_ not modelled 96.8 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 31 d1y5ib1 not modelled 96.8 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 32 c2ivfB_ not modelled 96.7 27 PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 33 c2fgoA_ not modelled 96.7 28 PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa 34 d1bc6a_ not modelled 96.7 36 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 35 c2zvsB_ not modelled 96.6 30 PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli 36 d2fdna_ not modelled 96.6 45 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 37 d1dura_ not modelled 96.4 37 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 38 d1blua_ not modelled 96.4 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 39 d1kqfb1 not modelled 96.3 31 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 40 d1h98a_ not modelled 96.2 41 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 41 d1fcaa_ not modelled 96.1 45 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 42 c3gyxJ_ not modelled 96.1 38 PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas 43 c2v2kB_ not modelled 96.1 40 PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis 44 d1jnrb_ not modelled 96.0 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 45 c1ti2F_ not modelled 95.9 20 PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici 46 d1h0hb_ not modelled 95.5 21 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 47 d2gmha3 not modelled 95.3 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:ETF-QO domain-like 48 c2vdcI_ not modelled 95.3 18 PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. 49 c1dwlA_ not modelled 95.3 26 PDB header:electron transfer Chain: A: PDB Molecule:ferredoxin i; PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation 50 c3c7bE_ not modelled 94.8 19 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 51 c2vpyB_ not modelled 94.5 46 PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) 52 d1iqza_ not modelled 94.5 20 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 53 c2v4jE_ not modelled 94.2 17 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 54 d1vjwa_ not modelled 93.9 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 55 d1vlfn2 not modelled 93.6 23 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 56 d1sj1a_ not modelled 93.2 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 57 d1fxra_ not modelled 92.8 21 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 58 d3c7bb1 not modelled 92.3 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 59 d1gtea1 not modelled 92.3 21 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Dihydropyrimidine dehydrogenase, N-terminal domain 60 c2fugA_ not modelled 91.7 12 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 61 c2v4jA_ not modelled 91.6 43 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 62 c3c7bA_ not modelled 89.8 30 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 63 d1u3da2 not modelled 86.2 21 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 64 c2lciA_ not modelled 81.9 19 PDB header:de novo protein Chain: A: PDB Molecule:protein or36; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or36 (casd3 target) 65 d2v4jb1 81.5 33 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 66 d1np7a2 not modelled 72.2 21 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 67 d1owla2 not modelled 72.1 24 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 68 c3bk7A_ not modelled 60.8 33 PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii 69 c1u3cA_ not modelled 59.1 21 PDB header:signaling protein Chain: A: PDB Molecule:cryptochrome 1 apoprotein; PDBTitle: crystal structure of the phr domain of cryptochrome 1 from2 arabidopsis thaliana 70 c1np7A_ not modelled 57.8 20 PDB header:lyase Chain: A: PDB Molecule:dna photolyase; PDBTitle: crystal structure analysis of synechocystis sp. pcc6803 cryptochrome 71 c2l69A_ not modelled 54.5 25 PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x3 fold protein; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28 72 c2vdcF_ not modelled 52.9 38 PDB header:oxidoreductase Chain: F: PDB Molecule:glutamate synthase [nadph] large chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. 73 c1lm1A_ not modelled 51.1 38 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin-dependent glutamate synthase; PDBTitle: structural studies on the synchronization of catalytic centers in2 glutamate synthase: native enzyme 74 c2xrzA_ not modelled 50.4 26 PDB header:lyase/dna Chain: A: PDB Molecule:deoxyribodipyrimidine photolyase; PDBTitle: x-ray structure of archaeal class ii cpd photolyase from2 methanosarcina mazei in complex with intact cpd-lesion 75 c1tezB_ not modelled 50.3 24 PDB header:lyase/dna Chain: B: PDB Molecule:deoxyribodipyrimidine photolyase; PDBTitle: complex between dna and the dna photolyase from anacystis nidulans 76 c1g8jC_ not modelled 50.2 20 PDB header:oxidoreductase Chain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis 77 c3cvyA_ not modelled 49.2 10 PDB header:lyase/dna Chain: A: PDB Molecule:re11660p; PDBTitle: drosophila melanogaster (6-4) photolyase bound to repaired2 ds dna 78 d1ofda2 not modelled 47.6 19 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 79 d2gm3a1 not modelled 43.9 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 80 d2j07a2 not modelled 42.8 15 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 81 d1zgza1 not modelled 40.2 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 82 d1vdha_ not modelled 40.0 15 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Chlorite dismutase-like 83 d1t0tv_ not modelled 36.4 18 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Chlorite dismutase-like 84 c3cvjB_ not modelled 36.3 13 PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution 85 d2abka_ not modelled 36.1 30 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 86 c3fy4C_ not modelled 35.3 11 PDB header:lyase Chain: C: PDB Molecule:6-4 photolyase; PDBTitle: (6-4) photolyase crystal structure 87 d1a77a1 not modelled 33.9 20 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 88 c3cg4A_ not modelled 33.0 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like); PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 89 d1mc8a1 not modelled 31.3 15 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 90 d1xhfa1 not modelled 30.0 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 91 d1ul1x1 not modelled 29.4 26 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 92 d1ea0a2 not modelled 28.9 17 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 93 d2fcja1 not modelled 28.6 20 Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain 94 c3c3mA_ not modelled 27.5 8 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1 95 d1dnpa2 not modelled 26.8 14 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 96 d1b43a1 not modelled 26.6 20 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 97 c1m6vE_ not modelled 25.7 20 PDB header:ligase Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain; PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase 98 c1yisA_ not modelled 24.8 11 PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: structural genomics of caenorhabditis elegans: adenylosuccinate lyase 99 c2kvgA_ not modelled 24.2 32 PDB header:transcription Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32; PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein 100 d2nu7b1 not modelled 24.0 13 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 101 c3qq5A_ not modelled 23.4 57 PDB header:oxidoreductase Chain: A: PDB Molecule:small gtp-binding protein; PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf 102 c2rdmB_ not modelled 21.9 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419 103 d2naca2 not modelled 21.9 21 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 104 d1zh2a1 not modelled 21.7 16 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 105 c3hdgE_ not modelled 21.5 11 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes 106 c3hbrD_ not modelled 21.2 19 PDB header:hydrolase Chain: D: PDB Molecule:oxa-48; PDBTitle: crystal structure of oxa-48 beta-lactamase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0