Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP10902
DateThu Jan 5 11:32:21 GMT 2012
Unique Job IDd37252e5d99cf7a3

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1yq4A_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit;
PDBTitle: avian respiratory complex ii with 3-nitropropionate and ubiquinone
Confidence and coverage
Confidence:100.0% Coverage: 96%
519 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNTLPEHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQGGIAAVFDET
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Disorder  ??????































?
????















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   .........70.........80.........90.........100.........110.........120
Sequence  DSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTR
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????








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   .........130.........140.........150.........160.........170.........180
Sequence  EGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERSNAVDLIVSDKIGLPGTRRVV
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??
?





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   .........190.........200.........210.........220.........230.........240
Sequence  GAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEF
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   .........250.........260.........270.........280.........290.........300
Sequence  NQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDFDERGELAPRDIVARAIDHE
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   .........310.........320.........330.........340.........350.........360
Sequence  MKRLGADCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLTQEPVPIVPAAHYTCGGVMVD
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   .........370.........380.........390.........400.........410.........420
Sequence  DHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMPYAHDISTLP
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??????????
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   .........430.........440.........450.........460.........470.........480
Sequence  PWDESRVENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAH
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Disorder  ?





?
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   .........490.........500.........510.........520.........530.........540
Sequence  FRVSNNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDYPELLTHSGPSILSPGNHYINR
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???????
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Sequence 
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1yq4 chain A

3D model

Region: 4 - 537
Aligned: 519
Modelled: 534
Confidence: 100.0%
Identity: 31%
PDB header:oxidoreductase
Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit;
PDBTitle: avian respiratory complex ii with 3-nitropropionate and ubiquinone

Phyre2

PDB 1kf6 chain A

3D model

Region: 4 - 537
Aligned: 520
Modelled: 527
Confidence: 100.0%
Identity: 34%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fumarate reductase flavoprotein;
PDBTitle: e. coli quinol-fumarate reductase with bound inhibitor hqno

Phyre2

PDB 3p4r chain M

3D model

Region: 1 - 537
Aligned: 520
Modelled: 537
Confidence: 100.0%
Identity: 34%
PDB header:oxidoreductase
Chain: M: PDB Molecule:fumarate reductase flavoprotein subunit;
PDBTitle: crystal structure of menaquinol:fumarate oxidoreductase in complex2 with glutarate

Phyre2

PDB 2bs3 chain A

3D model

Region: 4 - 537
Aligned: 523
Modelled: 534
Confidence: 100.0%
Identity: 30%
PDB header:oxidoreductase
Chain: A: PDB Molecule:quinol-fumarate reductase flavoprotein subunit a;
PDBTitle: glu c180 -> gln variant quinol:fumarate reductase from2 wolinella succinogenes

Phyre2

PDB 2acz chain A

3D model

Region: 1 - 540
Aligned: 529
Modelled: 540
Confidence: 100.0%
Identity: 31%
PDB header:oxidoreductase/electron transport
Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit;
PDBTitle: complex ii (succinate dehydrogenase) from e. coli with atpenin a52 inhibitor co-crystallized at the ubiquinone binding site

Phyre2

PDB 1chu chain A

3D model

Region: 2 - 533
Aligned: 478
Modelled: 494
Confidence: 100.0%
Identity: 98%
PDB header:flavoenzyme
Chain: A: PDB Molecule:protein (l-aspartate oxidase);
PDBTitle: structure of l-aspartate oxidase: implications for the2 succinate dehydrogenase/ fumarate reducatse family

Phyre2

PDB 2e5v chain A

3D model

Region: 11 - 533
Aligned: 467
Modelled: 492
Confidence: 100.0%
Identity: 37%
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-aspartate oxidase;
PDBTitle: crystal structure of l-aspartate oxidase from2 hyperthermophilic archaeon sulfolobus tokodaii

Phyre2

PDB 2fja chain C

3D model

Region: 5 - 537
Aligned: 508
Modelled: 520
Confidence: 100.0%
Identity: 21%
PDB header:oxidoreductase
Chain: C: PDB Molecule:adenylylsulfate reductase, subunit a;
PDBTitle: adenosine 5'-phosphosulfate reductase in complex with2 substrate

Phyre2

PDB 3gyx chain A

3D model

Region: 3 - 537
Aligned: 519
Modelled: 535
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:adenylylsulfate reductase;
PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas

Phyre2

PDB 1qo8 chain A

3D model

Region: 3 - 410
Aligned: 377
Modelled: 408
Confidence: 100.0%
Identity: 30%
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase;
PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase

Phyre2

PDB 1d4c chain B

3D model

Region: 3 - 412
Aligned: 377
Modelled: 400
Confidence: 100.0%
Identity: 31%
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavocytochrome c fumarate reductase;
PDBTitle: crystal structure of the uncomplexed form of the2 flavocytochrome c fumarate reductase of shewanella3 putrefaciens strain mr-1

Phyre2

PDB 1jrx chain A

3D model

Region: 3 - 410
Aligned: 378
Modelled: 395
Confidence: 100.0%
Identity: 30%
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c;
PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina

Phyre2

PDB 1chu chain A domain 2

3D model

Region: 2 - 418
Aligned: 250
Modelled: 263
Confidence: 100.0%
Identity: 97%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain

Phyre2

PDB 1kf6 chain A domain 2

3D model

Region: 1 - 449
Aligned: 308
Modelled: 326
Confidence: 100.0%
Identity: 35%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain

Phyre2

PDB 1y0p chain A domain 2

3D model

Region: 3 - 410
Aligned: 278
Modelled: 296
Confidence: 100.0%
Identity: 29%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain

Phyre2

PDB 1qo8 chain A domain 2

3D model

Region: 3 - 410
Aligned: 282
Modelled: 290
Confidence: 100.0%
Identity: 30%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain

Phyre2

PDB 1nek chain A domain 2

3D model

Region: 3 - 449
Aligned: 322
Modelled: 331
Confidence: 100.0%
Identity: 33%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain

Phyre2

PDB 1d4c chain A domain 2

3D model

Region: 5 - 412
Aligned: 283
Modelled: 294
Confidence: 100.0%
Identity: 29%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain

Phyre2

PDB 2gqf chain A

3D model

Region: 7 - 409
Aligned: 353
Modelled: 365
Confidence: 100.0%
Identity: 18%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein hi0933;
PDBTitle: crystal structure of flavoprotein hi0933 from haemophilus influenzae2 rd

Phyre2

PDB 2i0z chain A

3D model

Region: 8 - 411
Aligned: 357
Modelled: 379
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nad(fad)-utilizing dehydrogenases;
PDBTitle: crystal structure of a fad binding protein from bacillus2 cereus, a putative nad(fad)-utilizing dehydrogenases

Phyre2
1

c1yq4A_
2

c1kf6A_
3

c3p4rM_
4

c2bs3A_
5

c2aczA_
6

c1chuA_
7

c2e5vA_
8

c2fjaC_
9

c3gyxA_
10

c1qo8A_
11

c1d4cB_
12

c1jrxA_
13

d1chua2
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d1kf6a2
15

d1y0pa2
16

d1qo8a2
17

d1neka2
18

d1d4ca2
19

c2gqfA_
20

c2i0zA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1yq4A_



100.0 31 PDB header:oxidoreductase
Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit;
PDBTitle: avian respiratory complex ii with 3-nitropropionate and ubiquinone
2c1kf6A_



100.0 34 PDB header:oxidoreductase
Chain: A: PDB Molecule:fumarate reductase flavoprotein;
PDBTitle: e. coli quinol-fumarate reductase with bound inhibitor hqno
3c3p4rM_



100.0 34 PDB header:oxidoreductase
Chain: M: PDB Molecule:fumarate reductase flavoprotein subunit;
PDBTitle: crystal structure of menaquinol:fumarate oxidoreductase in complex2 with glutarate
4c2bs3A_



100.0 30 PDB header:oxidoreductase
Chain: A: PDB Molecule:quinol-fumarate reductase flavoprotein subunit a;
PDBTitle: glu c180 -> gln variant quinol:fumarate reductase from2 wolinella succinogenes
5c2aczA_



100.0 31 PDB header:oxidoreductase/electron transport
Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit;
PDBTitle: complex ii (succinate dehydrogenase) from e. coli with atpenin a52 inhibitor co-crystallized at the ubiquinone binding site
6c1chuA_



100.0 98 PDB header:flavoenzyme
Chain: A: PDB Molecule:protein (l-aspartate oxidase);
PDBTitle: structure of l-aspartate oxidase: implications for the2 succinate dehydrogenase/ fumarate reducatse family
7c2e5vA_



100.0 37 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-aspartate oxidase;
PDBTitle: crystal structure of l-aspartate oxidase from2 hyperthermophilic archaeon sulfolobus tokodaii
8c2fjaC_



100.0 21 PDB header:oxidoreductase
Chain: C: PDB Molecule:adenylylsulfate reductase, subunit a;
PDBTitle: adenosine 5'-phosphosulfate reductase in complex with2 substrate
9c3gyxA_



100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:adenylylsulfate reductase;
PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas
10c1qo8A_



100.0 30 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase;
PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase
11c1d4cB_



100.0 31 PDB header:oxidoreductase
Chain: B: PDB Molecule:flavocytochrome c fumarate reductase;
PDBTitle: crystal structure of the uncomplexed form of the2 flavocytochrome c fumarate reductase of shewanella3 putrefaciens strain mr-1
12c1jrxA_



100.0 30 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c;
PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina
13d1chua2



100.0 97 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
14d1kf6a2



100.0 35 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
15d1y0pa2



100.0 29 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
16d1qo8a2



100.0 30 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
17d1neka2



100.0 33 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
18d1d4ca2



100.0 29 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
19c2gqfA_



100.0 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein hi0933;
PDBTitle: crystal structure of flavoprotein hi0933 from haemophilus influenzae2 rd
20c2i0zA_



100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:nad(fad)-utilizing dehydrogenases;
PDBTitle: crystal structure of a fad binding protein from bacillus2 cereus, a putative nad(fad)-utilizing dehydrogenases
21d2bs2a2



not modelled 100.0 30 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
22d1jnra2



not modelled 100.0 21 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
23c3g05B_



not modelled 100.0 21 PDB header:rna binding protein
Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme
PDBTitle: crystal structure of n-terminal domain (2-550) of e.coli mnmg
24c3cesB_



not modelled 99.9 20 PDB header:rna binding protein
Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme
PDBTitle: crystal structure of e.coli mnmg (gida), a highly-conserved trna2 modifying enzyme
25d1neka1



not modelled 99.9 20 Fold:Spectrin repeat-like
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
26d1chua1



not modelled 99.9 100 Fold:Spectrin repeat-like
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
27d2bs2a1



not modelled 99.9 24 Fold:Spectrin repeat-like
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
28d1kf6a1



not modelled 99.9 26 Fold:Spectrin repeat-like
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
29d1jnra1



not modelled 99.9 26 Fold:Spectrin repeat-like
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
30d1chua3



not modelled 99.9 100 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
31c3cp8C_



not modelled 99.9 19 PDB header:oxidoreductase
Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl
PDBTitle: crystal structure of gida from chlorobium tepidum
32c3nlcA_



not modelled 99.9 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein vp0956;
PDBTitle: crystal structure of the vp0956 protein from vibrio parahaemolyticus.2 northeast structural genomics consortium target vpr147
33d2gqfa1



not modelled 99.9 26 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:HI0933 N-terminal domain-like
34c2zxiC_



not modelled 99.9 19 PDB header:fad-binding protein
Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl
PDBTitle: structure of aquifex aeolicus gida in the form ii crystal
35d2bs2a3



not modelled 99.9 38 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
36c2v6oA_



not modelled 99.9 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin glutathione reductase;
PDBTitle: structure of schistosoma mansoni thioredoxin-glutathione2 reductase (smtgr)
37d1neka3



not modelled 99.8 37 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
38c3dgzA_



not modelled 99.8 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase 2;
PDBTitle: crystal structure of mouse mitochondrial thioredoxin reductase, c-2 terminal 3-residue truncation
39c1zkqA_



not modelled 99.8 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase 2, mitochondrial;
PDBTitle: crystal structure of mouse thioredoxin reductase type 2
40c2nvkX_



not modelled 99.8 20 PDB header:oxidoreductase
Chain: X: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of thioredoxin reductase from drosophila2 melanogaster
41d1kf6a3



not modelled 99.8 38 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
42c1tytA_



not modelled 99.8 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:trypanothione reductase, oxidized form;
PDBTitle: crystal and molecular structure of crithidia fasciculata2 trypanothione reductase at 2.6 angstroms resolution
43c2c3dB_



not modelled 99.8 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxopropyl-com reductase;
PDBTitle: 2.15 angstrom crystal structure of 2-ketopropyl coenzyme m2 oxidoreductase carboxylase with a coenzyme m disulfide3 bound at the active site
44c2cfyB_



not modelled 99.8 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin reductase 1;
PDBTitle: crystal structure of human thioredoxin reductase 1
45c1v59B_



not modelled 99.8 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+
46d2i0za1



not modelled 99.8 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:HI0933 N-terminal domain-like
47c1zmcG_



not modelled 99.8 18 PDB header:oxidoreductase
Chain: G: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of human dihydrolipoamide dehydrogenase2 complexed to nad+
48c1hyuA_



not modelled 99.8 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f;
PDBTitle: crystal structure of intact ahpf
49c1ndaD_



not modelled 99.8 17 PDB header:oxidoreductase
Chain: D: PDB Molecule:trypanothione oxidoreductase;
PDBTitle: the structure of trypanosoma cruzi trypanothione reductase2 in the oxidized and nadph reduced state
50c1ojtA_



not modelled 99.8 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:surface protein;
PDBTitle: structure of dihydrolipoamide dehydrogenase
51c3urhB_



not modelled 99.7 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of a dihydrolipoamide dehydrogenase from2 sinorhizobium meliloti 1021
52c2w0hA_



not modelled 99.7 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:trypanothione reductase;
PDBTitle: x ray structure of leishmania infantum trypanothione2 reductase in complex with antimony and nadph
53c2eq8E_



not modelled 99.7 27 PDB header:oxidoreductase
Chain: E: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp
54c1geuA_



not modelled 99.7 18 PDB header:oxidoreductase(flavoenzyme)
Chain: A: PDB Molecule:glutathione reductase;
PDBTitle: anatomy of an engineered nad-binding site
55c2a8xA_



not modelled 99.7 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of lipoamide dehydrogenase from2 mycobacterium tuberculosis
56c3o0hA_



not modelled 99.7 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione reductase;
PDBTitle: crystal structure of glutathione reductase from bartonella henselae
57c1onfA_



not modelled 99.7 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione reductase;
PDBTitle: crystal structure of plasmodium falciparum glutathione reductase
58c3atrA_



not modelled 99.7 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:conserved archaeal protein;
PDBTitle: geranylgeranyl reductase (ggr) from sulfolobus acidocaldarius co-2 crystallized with its ligand
59d3grsa1



not modelled 99.7 25 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
60d1jnra3



not modelled 99.7 21 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
61c1lpfB_



not modelled 99.7 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: three-dimensional structure of lipoamide dehydrogenase from2 pseudomonas fluorescens at 2.8 angstroms resolution.3 analysis of redox and thermostability properties
62c1dxlC_



not modelled 99.7 17 PDB header:oxidoreductase
Chain: C: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: dihydrolipoamide dehydrogenase of glycine decarboxylase2 from pisum sativum
63c2rghA_



not modelled 99.7 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
64d3lada1



not modelled 99.7 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
65c1bwcA_



not modelled 99.7 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (glutathione reductase);
PDBTitle: structure of human glutathione reductase complexed with ajoene2 inhibitor and subversive substrate
66d1h6va1



not modelled 99.7 25 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
67c2rgoA_



not modelled 99.7 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
68c2qaeA_



not modelled 99.7 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure analysis of trypanosoma cruzi lipoamide2 dehydrogenase
69c2hqmB_



not modelled 99.7 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:glutathione reductase;
PDBTitle: crystal structure of glutathione reductase glr1 from the yeast2 saccharomyces cerevisiae
70c2zbwA_



not modelled 99.7 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of thioredoxin reductase-like protein from thermus2 thermophilus hb8
71c1ebdB_



not modelled 99.7 26 PDB header:complex (oxidoreductase/transferase)
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: dihydrolipoamide dehydrogenase complexed with the binding2 domain of the dihydrolipoamide acetylase
72d1dxla1



not modelled 99.7 21 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
73d1lpfa1



not modelled 99.7 24 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
74c3da1A_



not modelled 99.7 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase;
PDBTitle: x-ray structure of the glycerol-3-phosphate dehydrogenase2 from bacillus halodurans complexed with fad. northeast3 structural genomics consortium target bhr167.
75c2eq7B_



not modelled 99.7 25 PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxoglutarate dehydrogenase e3 component;
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo
76c3jskN_



not modelled 99.6 22 PDB header:biosynthetic protein
Chain: N: PDB Molecule:cypbp37 protein;
PDBTitle: thiazole synthase from neurospora crassa
77c3ic9D_



not modelled 99.6 23 PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: the structure of dihydrolipoamide dehydrogenase from colwellia2 psychrerythraea 34h.
78c3l8kB_



not modelled 99.6 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of a dihydrolipoyl dehydrogenase from2 sulfolobus solfataricus
79c3r9uA_



not modelled 99.6 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: thioredoxin-disulfide reductase from campylobacter jejuni.
80d1v59a1



not modelled 99.6 20 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
81c1x31A_



not modelled 99.6 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:sarcosine oxidase alpha subunit;
PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
82c1lvlA_



not modelled 99.6 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: the refined structure of pseudomonas putida lipoamide dehydrogenase2 complexed with nad+ at 2.45 angstroms resolution
83c2r9zB_



not modelled 99.6 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:glutathione amide reductase;
PDBTitle: glutathione amide reductase from chromatium gracile
84c1f6mF_



not modelled 99.6 18 PDB header:oxidoreductase
Chain: F: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of a complex between thioredoxin2 reductase, thioredoxin, and the nadp+ analog, aadp+
85d1ojta1



not modelled 99.6 19 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
86c2r4jA_



not modelled 99.6 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase;
PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap
87c3fbsB_



not modelled 99.6 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase;
PDBTitle: the crystal structure of the oxidoreductase from agrobacterium2 tumefaciens
88c2q0lA_



not modelled 99.6 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: helicobacter pylori thioredoxin reductase reduced by sodium dithionite2 in complex with nadp+
89c1gthD_



not modelled 99.6 22 PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil
90d1ryia1



not modelled 99.6 13 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
91d1feca1



not modelled 99.6 24 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
92c1zx9A_



not modelled 99.6 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:mercuric reductase;
PDBTitle: crystal structure of tn501 mera
93c3f8rD_



not modelled 99.6 19 PDB header:oxidoreductase
Chain: D: PDB Molecule:thioredoxin reductase (trxb-3);
PDBTitle: crystal structure of sulfolobus solfataricus thioredoxin2 reductase b3 in complex with two nadp molecules
94d1lvla1



not modelled 99.6 22 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
95c2q7vA_



not modelled 99.6 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of deinococcus radiodurans thioredoxin2 reductase
96c3ctyA_



not modelled 99.6 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of t. acidophilum thioredoxin reductase
97c1xdiA_



not modelled 99.6 17 PDB header:unknown function
Chain: A: PDB Molecule:rv3303c-lpda;
PDBTitle: crystal structure of lpda (rv3303c) from mycobacterium tuberculosis
98c2gmhA_



not modelled 99.6 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone
PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone
99c1y56A_



not modelled 99.6 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein ph1363;
PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii
100d1rp0a1



not modelled 99.6 25 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Thi4-like
101c3icrA_



not modelled 99.6 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme a-disulfide reductase;
PDBTitle: crystal structure of oxidized bacillus anthracis coadr-rhd
102d1ebda1



not modelled 99.6 18 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
103d2gf3a1



not modelled 99.5 13 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
104c3ab1B_



not modelled 99.5 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin--nadp reductase;
PDBTitle: crystal structure of ferredoxin nadp+ oxidoreductase
105c1fl2A_



not modelled 99.5 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f;
PDBTitle: catalytic core component of the alkylhydroperoxide reductase ahpf from2 e.coli
106d1aoga1



not modelled 99.5 18 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
107c3cgdB_



not modelled 99.5 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridine nucleotide-disulfide oxidoreductase, class i;
PDBTitle: pyridine nucleotide complexes with bacillus anthracis coenzyme a-2 disulfide reductase: a structural analysis of dual nad(p)h3 specificity
108c1gv4A_



not modelled 99.5 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:programed cell death protein 8;
PDBTitle: murine apoptosis-inducing factor (aif)
109c3i3lA_



not modelled 99.5 20 PDB header:hydrolase
Chain: A: PDB Molecule:alkylhalidase cmls;
PDBTitle: crystal structure of cmls, a flavin-dependent halogenase
110c1q1wA_



not modelled 99.5 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:putidaredoxin reductase;
PDBTitle: crystal structure of putidaredoxin reductase from2 pseudomonas putida
111c3e1tA_



not modelled 99.5 17 PDB header:flavoprotein
Chain: A: PDB Molecule:halogenase;
PDBTitle: structure and action of the myxobacterial chondrochloren2 halogenase cndh, a new variant of fad-dependent halogenases
112c3ntaA_



not modelled 99.5 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase
113c1gpeA_



not modelled 99.5 21 PDB header:oxidoreductase(flavoprotein)
Chain: A: PDB Molecule:protein (glucose oxidase);
PDBTitle: glucose oxidase from penicillium amagasakiense
114c1yqzA_



not modelled 99.5 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme a disulfide reductase;
PDBTitle: structure of coenzyme a-disulfide reductase from2 staphylococcus aureus refined at 1.54 angstrom resolution
115d1pj5a2



not modelled 99.5 18 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
116c3dmeB_



not modelled 99.5 16 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved exported protein;
PDBTitle: crystal structure of conserved exported protein from2 bordetella pertussis. northeast structural genomics target3 ber141
117c1pj6A_



not modelled 99.5 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:n,n-dimethylglycine oxidase;
PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid
118c2bcpA_



not modelled 99.5 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh oxidase;
PDBTitle: structural analysis of streptococcus pyogenes nadh oxidase:2 c44s nox with azide
119c3kd9B_



not modelled 99.5 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:coenzyme a disulfide reductase;
PDBTitle: crystal structure of pyridine nucleotide disulfide oxidoreductase from2 pyrococcus horikoshii
120c1naaB_



not modelled 99.5 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:cellobiose dehydrogenase;
PDBTitle: cellobiose dehydrogenase flavoprotein fragment in complex with2 cellobionolactam

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0