Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP32711
DateThu Jan 5 11:50:30 GMT 2012
Unique Job IDd3229b40593ee259

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2hl7A_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh;
PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa
Confidence and coverage
Confidence:100.0% Coverage: 65%
82 residues ( 65% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNKGLLTLLLLFTCFAHAQVVDTWQFANPQQQQQALNIASQLRCPQCQNQNLLESNAPVA
Secondary structure 





















SS confidence 



























































Disorder  ?














???????????

























????


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   .........70.........80.........90.........100.........110.........120
Sequence  VSMRHQVYSMVAEGKNEVEIIGWMTERYGDFVRYNPPLTGQTLVLWALPVVLLLLMALIL
Secondary structure 












SS confidence 



























































Disorder 











????











































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   .......
Sequence  WRVRAKR
Secondary structure 

SS confidence 






Disorder 


????
Disorder confidence 






 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2hl7 chain A

3D model

Region: 16 - 97
Aligned: 82
Modelled: 82
Confidence: 100.0%
Identity: 44%
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh;
PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa

Phyre2

PDB 2kw0 chain A

3D model

Region: 20 - 100
Aligned: 81
Modelled: 81
Confidence: 100.0%
Identity: 43%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ccmh protein;
PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli

Phyre2

PDB 1pby chain A domain 1

3D model

Region: 43 - 105
Aligned: 60
Modelled: 63
Confidence: 73.5%
Identity: 15%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2

Phyre2

PDB 2qsr chain A

3D model

Region: 61 - 90
Aligned: 30
Modelled: 30
Confidence: 66.4%
Identity: 17%
PDB header:transcription
Chain: A: PDB Molecule:transcription-repair coupling factor;
PDBTitle: crystal structure of c-terminal domain of transcription-repair2 coupling factor

Phyre2

PDB 2eyq chain A domain 6

3D model

Region: 61 - 90
Aligned: 30
Modelled: 30
Confidence: 62.8%
Identity: 37%
Fold: TRCF domain-like
Superfamily: TRCF domain-like
Family: TRCF domain

Phyre2

PDB 3omd chain B

3D model

Region: 65 - 86
Aligned: 22
Modelled: 22
Confidence: 62.2%
Identity: 9%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of unknown function protein from leptospirillum2 rubarum

Phyre2

PDB 2c4r chain L

3D model

Region: 44 - 92
Aligned: 49
Modelled: 49
Confidence: 61.0%
Identity: 18%
PDB header:hydrolase
Chain: L: PDB Molecule:ribonuclease e;
PDBTitle: catalytic domain of e. coli rnase e

Phyre2

PDB 1r5y chain A

3D model

Region: 44 - 88
Aligned: 45
Modelled: 45
Confidence: 59.8%
Identity: 16%
Fold: TIM beta/alpha-barrel
Superfamily: tRNA-guanine transglycosylase
Family: tRNA-guanine transglycosylase

Phyre2

PDB 2x48 chain B

3D model

Region: 62 - 84
Aligned: 23
Modelled: 23
Confidence: 54.4%
Identity: 9%
PDB header:viral protein
Chain: B: PDB Molecule:cag38821;
PDBTitle: orf 55 from sulfolobus islandicus rudivirus 1

Phyre2

PDB 2bpb chain B

3D model

Region: 43 - 88
Aligned: 46
Modelled: 46
Confidence: 54.1%
Identity: 17%
PDB header:oxidoreductase
Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b;
PDBTitle: sulfite dehydrogenase from starkeya novella

Phyre2

PDB 3lm3 chain A

3D model

Region: 68 - 104
Aligned: 37
Modelled: 34
Confidence: 52.1%
Identity: 27%
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative glycoside hydrolase/deacetylase2 (bdi_3119) from parabacteroides distasonis at 1.44 a resolution

Phyre2

PDB 1jmx chain A domain 1

3D model

Region: 43 - 89
Aligned: 47
Modelled: 47
Confidence: 46.9%
Identity: 13%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2

Phyre2

PDB 3d3m chain B

3D model

Region: 61 - 96
Aligned: 36
Modelled: 36
Confidence: 46.4%
Identity: 6%
PDB header:translation
Chain: B: PDB Molecule:eukaryotic translation initiation factor 4 gamma
PDBTitle: the crystal structure of the c-terminal region of death2 associated protein 5(dap5)

Phyre2

PDB 1fs1 chain B domain 1

3D model

Region: 65 - 84
Aligned: 19
Modelled: 20
Confidence: 42.6%
Identity: 32%
Fold: Skp1 dimerisation domain-like
Superfamily: Skp1 dimerisation domain-like
Family: Skp1 dimerisation domain-like

Phyre2

PDB 1fs2 chain B domain 1

3D model

Region: 65 - 84
Aligned: 19
Modelled: 20
Confidence: 40.6%
Identity: 32%
Fold: Skp1 dimerisation domain-like
Superfamily: Skp1 dimerisation domain-like
Family: Skp1 dimerisation domain-like

Phyre2

PDB 1ug3 chain A domain 2

3D model

Region: 61 - 96
Aligned: 36
Modelled: 36
Confidence: 39.1%
Identity: 11%
Fold: alpha-alpha superhelix
Superfamily: ARM repeat
Family: MIF4G domain-like

Phyre2

PDB 1iq8 chain B

3D model

Region: 44 - 75
Aligned: 32
Modelled: 32
Confidence: 38.6%
Identity: 38%
PDB header:transferase
Chain: B: PDB Molecule:archaeosine trna-guanine transglycosylase;
PDBTitle: crystal structure of archaeosine trna-guanine2 transglycosylase from pyrococcus horikoshii

Phyre2

PDB 1iq8 chain A domain 1

3D model

Region: 44 - 87
Aligned: 44
Modelled: 44
Confidence: 38.2%
Identity: 20%
Fold: TIM beta/alpha-barrel
Superfamily: tRNA-guanine transglycosylase
Family: tRNA-guanine transglycosylase

Phyre2

PDB 1jm7 chain A

3D model

Region: 21 - 49
Aligned: 29
Modelled: 29
Confidence: 37.1%
Identity: 21%
Fold: RING/U-box
Superfamily: RING/U-box
Family: RING finger domain, C3HC4

Phyre2

PDB 1nex chain A domain 1

3D model

Region: 65 - 84
Aligned: 19
Modelled: 20
Confidence: 35.8%
Identity: 21%
Fold: Skp1 dimerisation domain-like
Superfamily: Skp1 dimerisation domain-like
Family: Skp1 dimerisation domain-like

Phyre2
1

c2hl7A_
2

c2kw0A_
3

d1pbya1
4

c2qsrA_
5

d2eyqa6
6

c3omdB_
7

c2c4rL_
8

d1r5ya_
9

c2x48B_
10

c2bpbB_
11

c3lm3A_
12

d1jmxa1
13

c3d3mB_
14

d1fs1b1
15

d1fs2b1
16

d1ug3a2
17

c1iq8B_
18

d1iq8a1
19

d1jm7a_
20

d1nexa1
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2hl7A_



100.0 44 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh;
PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa
2c2kw0A_



100.0 43 PDB header:oxidoreductase
Chain: A: PDB Molecule:ccmh protein;
PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli
3d1pbya1



73.5 15 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
4c2qsrA_



66.4 17 PDB header:transcription
Chain: A: PDB Molecule:transcription-repair coupling factor;
PDBTitle: crystal structure of c-terminal domain of transcription-repair2 coupling factor
5d2eyqa6



62.8 37 Fold:TRCF domain-like
Superfamily:TRCF domain-like
Family:TRCF domain
6c3omdB_



62.2 9 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of unknown function protein from leptospirillum2 rubarum
7c2c4rL_



61.0 18 PDB header:hydrolase
Chain: L: PDB Molecule:ribonuclease e;
PDBTitle: catalytic domain of e. coli rnase e
8d1r5ya_



59.8 16 Fold:TIM beta/alpha-barrel
Superfamily:tRNA-guanine transglycosylase
Family:tRNA-guanine transglycosylase
9c2x48B_



54.4 9 PDB header:viral protein
Chain: B: PDB Molecule:cag38821;
PDBTitle: orf 55 from sulfolobus islandicus rudivirus 1
10c2bpbB_



54.1 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b;
PDBTitle: sulfite dehydrogenase from starkeya novella
11c3lm3A_



52.1 27 PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative glycoside hydrolase/deacetylase2 (bdi_3119) from parabacteroides distasonis at 1.44 a resolution
12d1jmxa1



46.9 13 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
13c3d3mB_



46.4 6 PDB header:translation
Chain: B: PDB Molecule:eukaryotic translation initiation factor 4 gamma
PDBTitle: the crystal structure of the c-terminal region of death2 associated protein 5(dap5)
14d1fs1b1



42.6 32 Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
15d1fs2b1



40.6 32 Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
16d1ug3a2



39.1 11 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:MIF4G domain-like
17c1iq8B_



38.6 38 PDB header:transferase
Chain: B: PDB Molecule:archaeosine trna-guanine transglycosylase;
PDBTitle: crystal structure of archaeosine trna-guanine2 transglycosylase from pyrococcus horikoshii
18d1iq8a1



38.2 20 Fold:TIM beta/alpha-barrel
Superfamily:tRNA-guanine transglycosylase
Family:tRNA-guanine transglycosylase
19d1jm7a_



37.1 21 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
20d1nexa1



35.8 21 Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
21c2ashB_



not modelled 35.5 25 PDB header:transferase
Chain: B: PDB Molecule:queuine trna-ribosyltransferase;
PDBTitle: crystal structure of queuine trna-ribosyltransferase (ec 2.4.2.29)2 (trna-guanine (tm1561) from thermotoga maritima at 1.90 a resolution
22d1ef4a_



not modelled 35.4 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:RNA polymerase subunit RPB10
Family:RNA polymerase subunit RPB10
23c2jq5A_



not modelled 35.1 14 PDB header:structural genomics
Chain: A: PDB Molecule:sec-c motif;
PDBTitle: solution structure of rpa3114, a sec-c motif containing2 protein from rhodopseudomonas palustris; northeast3 structural genomics consortium target rpt5 / ontario4 center for structural proteomics target rp3097
24d6paxa1



not modelled 33.7 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
25c2eyqA_



not modelled 32.9 33 PDB header:hydrolase
Chain: A: PDB Molecule:transcription-repair coupling factor;
PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor
26c1u78A_



not modelled 30.8 14 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
27c3floD_



not modelled 29.1 21 PDB header:transferase
Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a;
PDBTitle: crystal structure of the carboxyl-terminal domain of yeast2 dna polymerase alpha in complex with its b subunit
28d2gmga1



not modelled 28.6 42 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PF0610-like
29d1wgna_



not modelled 27.0 22 Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
30c2opfA_



not modelled 26.3 67 PDB header:hydrolase/dna
Chain: A: PDB Molecule:endonuclease viii;
PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate
31c3b40A_



not modelled 25.1 17 PDB header:hydrolase
Chain: A: PDB Molecule:probable dipeptidase;
PDBTitle: crystal structure of the probable dipeptidase pvdm from2 pseudomonas aeruginosa
32d1k78a1



not modelled 24.4 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
33d1p7ia_



not modelled 23.9 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
34c3hosA_



not modelled 23.3 21 PDB header:transferase, dna binding protein/dna
Chain: A: PDB Molecule:transposable element mariner, complete cds;
PDBTitle: crystal structure of the mariner mos1 paired end complex with mg
35c2qeuA_



not modelled 22.7 8 PDB header:lyase
Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution
36c3llkA_



not modelled 22.7 28 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfhydryl oxidase 1;
PDBTitle: sulfhydryl oxidase fragment of human qsox1
37c3iz6X_



not modelled 22.7 24 PDB header:ribosome
Chain: X: PDB Molecule:40s ribosomal protein s27 (s27e);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
38c3g2bA_



not modelled 21.9 8 PDB header:biosynthetic protein
Chain: A: PDB Molecule:coenzyme pqq synthesis protein d;
PDBTitle: crystal structure of pqqd from xanthomonas campestris
39d1od6a_



not modelled 21.0 12 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
40d2ovra1



not modelled 20.9 32 Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
41d1qxfa_



not modelled 20.5 18 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein S27e
42c2ragB_



not modelled 20.0 16 PDB header:hydrolase
Chain: B: PDB Molecule:dipeptidase;
PDBTitle: crystal structure of aminohydrolase from caulobacter crescentus
43c3b9bA_



not modelled 20.0 12 PDB header:hydrolase
Chain: A: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium
PDBTitle: structure of the e2 beryllium fluoride complex of the serca2 ca2+-atpase
44d1eb7a2



not modelled 20.0 22 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
45c1ug3A_



not modelled 19.8 13 PDB header:translation
Chain: A: PDB Molecule:eukaryotic protein synthesis initiation factor
PDBTitle: c-terminal portion of human eif4gi
46c2jnhA_



not modelled 19.7 13 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b;
PDBTitle: solution structure of the uba domain from cbl-b
47d1p91a_



not modelled 19.4 31 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA methyltransferase RlmA
48d1odfa_



not modelled 19.3 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Phosphoribulokinase/pantothenate kinase
49d2ga1a1



not modelled 18.9 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Alr1493-like
50c1nexC_



not modelled 18.7 21 PDB header:ligase, cell cycle
Chain: C: PDB Molecule:centromere dna-binding protein complex cbf3
PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex
51c1ztbA_



not modelled 18.7 15 PDB header:ligase
Chain: A: PDB Molecule:chorismate synthase;
PDBTitle: crystal structure of chorismate synthase from mycobacterium2 tuberculosis
52c3o0rC_



not modelled 18.6 13 PDB header:immune system/oxidoreductase
Chain: C: PDB Molecule:nitric oxide reductase subunit c;
PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment
53c2pmzN_



not modelled 18.2 18 PDB header:translation, transferase
Chain: N: PDB Molecule:dna-directed rna polymerase subunit n;
PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
54c2jr6A_



not modelled 18.0 33 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0434 protein nma0874;
PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32
55c3lrqB_



not modelled 18.0 30 PDB header:ligase
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase trim37;
PDBTitle: crystal structure of the u-box domain of human ubiquitin-2 protein ligase (e3), northeast structural genomics3 consortium target hr4604d.
56c2js4A_



not modelled 17.9 44 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0434 protein bb2007;
PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54
57c2jvwA_



not modelled 17.4 25 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of uncharacterized protein q5e7h1 from vibrio2 fischeri. northeast structural genomics target vfr117
58c2xzmO_



not modelled 17.2 10 PDB header:ribosome
Chain: O: PDB Molecule:rps13e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
59d1y0ua_



not modelled 17.1 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
60d2cwqa1



not modelled 17.0 13 Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
61c3axjB_



not modelled 16.9 7 PDB header:dna binding protein
Chain: B: PDB Molecule:translin associated factor x, isoform b;
PDBTitle: high resolution crystal structure of c3po
62c2p1nD_



not modelled 16.3 32 PDB header:signaling protein
Chain: D: PDB Molecule:skp1-like protein 1a;
PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase
63d1lv3a_



not modelled 16.1 22 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Hypothetical zinc finger protein YacG
64c2ecgA_



not modelled 16.0 9 PDB header:apoptosis
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 4;
PDBTitle: solution structure of the ring domain of the baculoviral2 iap repeat-containing protein 4 from homo sapiens
65d2lfba_



not modelled 16.0 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
66d1sxjd1



not modelled 15.3 14 Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
67c3itcA_



not modelled 15.2 4 PDB header:hydrolase
Chain: A: PDB Molecule:renal dipeptidase;
PDBTitle: crystal structure of sco3058 with bound citrate and glycerol
68d2gmya1



not modelled 15.2 14 Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
69d2c0sa1



not modelled 14.9 43 Fold:ROP-like
Superfamily:BAS1536-like
Family:BAS1536-like
70c3s93B_



not modelled 14.5 12 PDB header:transcription
Chain: B: PDB Molecule:tudor domain-containing protein 5;
PDBTitle: crystal structure of conserved motif in tdrd5
71d1itua_



not modelled 14.5 12 Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Renal dipeptidase
72c3a44D_



not modelled 14.5 36 PDB header:metal binding protein
Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa;
PDBTitle: crystal structure of hypa in the dimeric form
73c2d9sA_



not modelled 14.4 10 PDB header:ligase
Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase;
PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna
74d1dl6a_



not modelled 14.4 25 Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
75c3izbX_



not modelled 14.3 33 PDB header:ribosome
Chain: X: PDB Molecule:40s ribosomal protein rps27 (s27e);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
76c3lpeF_



not modelled 14.3 24 PDB header:transferase
Chain: F: PDB Molecule:dna-directed rna polymerase subunit e'';
PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii
77c1b6aA_



not modelled 14.3 21 PDB header:angiogenesis inhibitor
Chain: A: PDB Molecule:methionine aminopeptidase;
PDBTitle: human methionine aminopeptidase 2 complexed with tnp-470
78d2c2vv1



not modelled 14.2 13 Fold:RING/U-box
Superfamily:RING/U-box
Family:U-box
79c3pjaK_



not modelled 13.9 13 PDB header:hydrolase
Chain: K: PDB Molecule:translin-associated protein x;
PDBTitle: crystal structure of human c3po complex
80d2cqxa1



not modelled 13.8 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
81c3qw4B_



not modelled 13.8 15 PDB header:transferase, lyase
Chain: B: PDB Molecule:ump synthase;
PDBTitle: structure of leishmania donovani ump synthase
82c1dl0A_



not modelled 13.7 46 PDB header:toxin
Chain: A: PDB Molecule:j-atracotoxin-hv1c;
PDBTitle: solution structure of the insecticidal neurotoxin j-2 atracotoxin-hv1c
83d1dl0a_



not modelled 13.7 46 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Spider toxins
84d2jnya1



not modelled 13.6 33 Fold:Trm112p-like
Superfamily:Trm112p-like
Family:Trm112p-like
85c2xzm6_



not modelled 13.4 47 PDB header:ribosome
Chain: 6: PDB Molecule:rps27e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
86c1nl0G_



not modelled 13.3 50 PDB header:immune system
Chain: G: PDB Molecule:factor ix;
PDBTitle: crystal structure of human factor ix gla domain in complex2 of an inhibitory antibody, 10c12
87d1jgga_



not modelled 13.1 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
88c3l6aA_



not modelled 13.0 5 PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 4 gamma 2;
PDBTitle: crystal structure of the c-terminal region of human p97
89d1o6ba_



not modelled 12.9 8 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
90c3fdgA_



not modelled 12.6 16 PDB header:hydrolase
Chain: A: PDB Molecule:dipeptidase ac. metallo peptidase. merops family m19;
PDBTitle: the crystal structure of the dipeptidase ac, metallo peptidase. merops2 family m19
91d1xkpa1



not modelled 12.3 14 Fold:Type III secretion system domain
Superfamily:Type III secretion system domain
Family:LcrE-like
92c2ao9H_



not modelled 12.2 13 PDB header:structural genomics, unknown function
Chain: H: PDB Molecule:phage protein;
PDBTitle: structural genomics, the crystal structure of a phage protein2 (phbc6a51) from bacillus cereus atcc 14579
93c2kpiA_



not modelled 12.1 44 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein sco3027;
PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58
94d2ao9a1



not modelled 12.0 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Nanomeric phage protein-like
95c1ee8A_



not modelled 11.9 57 PDB header:dna binding protein
Chain: A: PDB Molecule:mutm (fpg) protein;
PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8
96d1d8ja_



not modelled 11.9 33 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:The central core domain of TFIIE beta
97c3bg3B_



not modelled 11.9 10 PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase, mitochondrial;
PDBTitle: crystal structure of human pyruvate carboxylase (missing2 the biotin carboxylase domain at the n-terminus)
98c2do6A_



not modelled 11.9 15 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b;
PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna
99d1vnda_



not modelled 11.8 8 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0