Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3b40A_

Fold library idPDB HeaderMoleculeTitle
c3b40A_PDB header: hydrolaseChain: A: PDB Molecule: probable dipeptidase;PDBTitle: crystal structure of the probable dipeptidase pvdm from2 pseudomonas aeruginosa


Added to library: Tue Mar 16 12:34:43 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YPRKVMQHAEELHERILSFDSRITVPLDFGTTGNEVDKDGPGQLDLVKAGRGRLSGAALAIFGWPEMWPH
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)

TTS




TTTTBTTB
TTS

SSS

T









 .........80.........90.........100.........110.........120.........130.........140
Sequence KPTPGFVDEARHQQEIRYKILTGMVRDFPNQVGIAYSPEDFRRLAMEGKFAIVMSMLNAYPLGDDLSQLD
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)


TT
TTT
SSTT

SGGGTT
T
 .........150.........160.........170.........180.........190.........200.........210
Sequence KWAARGVRMFGFSYVGNNDWADSSRPLPFFNDSPDALGGLSPLGKQAVERLNDLGVIIDVSQMSTKALEQ
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP) TT



SSS

SSB
BSS

GGGT

TTTTSSB
T

TTB
 .........220.........230.........240.........250.........260.........270.........280
Sequence VAALSRAPIVASHSAPRALVDIKRNLSDHEMQLIKDSGGVIQVVGFPAYLRPLSKPTLDKLDALRARFDL
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP)
SS

BTTTS

TTSB
TT


S


TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence PPLEGLDYALMPGDPIITIWPEQRFGEYASALYGILEEEPKAGLKELVDAIDYTVKKVGIDHVGISSDFN
Predicted secondary structure


















































SS confidence





































































Known secondary structure (DSSP)



SSTTTSS


GGGGGS
TS


B
GGG

BT
 .........360.........370.........380.........390.........400
Sequence DGGGVDGWKDVSEIRNVTAELITRGYSDADIAKLWGGNFLRAWGEVQKRA
Predicted secondary structure












SS confidence

















































Known secondary structure (DSSP) TT

BBTB
SGGGT

TTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D