10/01/2012 05:10:27 : INFO  : Run start: Tue Jan 10 05:10:26 GMT 2012
10/01/2012 05:10:34 : INFO  : Initialised job
10/01/2012 05:10:37 : INFO  : Renaming log file 'phyre2_20120110_051025.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/d3229b40593ee259/phyre_20120110_051025.log'
10/01/2012 05:10:38 : INFO  : Initialised job:
Sequence
>batch____
MNKGLLTLLLLFTCFAHAQVVDTWQFANPQQQQQALNIASQLRCPQCQNQNLLESNAPVA
VSMRHQVYSMVAEGKNEVEIIGWMTERYGDFVRYNPPLTGQTLVLWALPVVLLLLMALIL
WRVRAKR

10/01/2012 05:10:40 : INFO  : Checked sequence
10/01/2012 05:10:44 : INFO  : Finding homologues with PSI-BLAST
10/01/2012 05:10:46 : INFO  : PSI-BLAST 3 iterations
10/01/2012 05:11:56 : INFO  : PSI-BLAST 5 iterations
10/01/2012 05:13:03 : INFO  : Finished PSI-BLAST
10/01/2012 05:13:06 : INFO  : Running Buildali to generate a3m file
10/01/2012 05:19:10 : INFO  : Converting to HMM
10/01/2012 05:19:12 : INFO  : Calibrating HMM
10/01/2012 05:19:25 : INFO  : Searching HMM database
10/01/2012 05:22:18 : INFO  : Finished buildali
10/01/2012 05:22:21 : INFO  : Predicting secondary structure
10/01/2012 05:22:32 : INFO  : Predicted secondary structure (PSI-Pred)
10/01/2012 05:22:34 : INFO  : Predicting Disordered regions
10/01/2012 05:22:40 : INFO  : Predicted Disorder (Disopred)
10/01/2012 05:22:42 : INFO  : Running memsat_svm check
10/01/2012 05:26:08 : INFO  : Running memsat_svm full
10/01/2012 05:32:08 : INFO  : Predicted Transmembrane (memsat_svm) ID 'd3229b40593ee259'
10/01/2012 05:32:10 : INFO  : Initialising fold library search
10/01/2012 05:32:14 : INFO  : Initialised search input
10/01/2012 05:32:18 : INFO  : Building Ensemble models
10/01/2012 05:32:23 : INFO  : Building hh.c2hl7A_.model.1.pdb
10/01/2012 05:32:43 : INFO  : Building hh.c2kw0A_.model.2.pdb
10/01/2012 05:32:59 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d3229b40593ee259/hh.c2kw0A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d3229b40593ee259/c2kw0A_.2.pdb
10/01/2012 05:33:05 : INFO  : Building c2hl7A_.1.pdb
10/01/2012 05:33:23 : INFO  : Building c2kw0A_.2.pdb
10/01/2012 05:33:41 : INFO  : Building d1pbya1.3.pdb
10/01/2012 05:34:01 : INFO  : Building c2qsrA_.4.pdb
10/01/2012 05:34:18 : INFO  : Building d2eyqa6.5.pdb
10/01/2012 05:34:37 : INFO  : Building c3omdB_.6.pdb
10/01/2012 05:34:55 : INFO  : Building c2c4rL_.7.pdb
10/01/2012 05:35:15 : INFO  : Building d1r5ya_.8.pdb
10/01/2012 05:35:33 : INFO  : Building c2x48B_.9.pdb
10/01/2012 05:35:52 : INFO  : Building c2bpbB_.10.pdb
10/01/2012 05:36:10 : INFO  : Building c3lm3A_.11.pdb
10/01/2012 05:36:28 : INFO  : Building d1jmxa1.12.pdb
10/01/2012 05:36:47 : INFO  : Building c3d3mB_.13.pdb
10/01/2012 05:37:06 : INFO  : Building d1fs1b1.14.pdb
10/01/2012 05:37:24 : INFO  : Building d1fs2b1.15.pdb
10/01/2012 05:37:43 : INFO  : Building d1ug3a2.16.pdb
10/01/2012 05:38:01 : INFO  : Building c1iq8B_.17.pdb
10/01/2012 05:38:20 : INFO  : Building d1iq8a1.18.pdb
10/01/2012 05:38:36 : INFO  : Building d1jm7a_.19.pdb
10/01/2012 05:38:55 : INFO  : Building d1nexa1.20.pdb
10/01/2012 05:39:57 : INFO  : Finished HH model building
10/01/2012 05:39:59 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
10/01/2012 05:41:05 : INFO  : html domain output complete ID 'd3229b40593ee259'
10/01/2012 05:48:25 : INFO  : Run end  : Tue Jan 10 05:48:24 GMT 2012
