Phyre 2 Results for P32711

Email | l.a.kelley@imperial.ac.uk
Description | P32711
Date | Thu Jan 5 11:50:30 GMT 2012
Unique Job ID | d3229b40593ee259

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2hl7A_ |
|  | 100.0 | 44 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh; PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa
2 | c2kw0A_ |
|  | 100.0 | 43 | PDB header:oxidoreductase Chain: A: PDB Molecule:ccmh protein; PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli
3 | d1pbya1 |
|  | 73.5 | 15 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
4 | c2qsrA_ |
|  | 66.4 | 17 | PDB header:transcription Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of c-terminal domain of transcription-repair2 coupling factor
5 | d2eyqa6 |
|  | 62.8 | 37 | Fold:TRCF domain-like Superfamily:TRCF domain-like Family:TRCF domain
6 | c3omdB_ |
|  | 62.2 | 9 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of unknown function protein from leptospirillum2 rubarum
7 | c2c4rL_ |
|  | 61.0 | 18 | PDB header:hydrolase Chain: L: PDB Molecule:ribonuclease e; PDBTitle: catalytic domain of e. coli rnase e
8 | d1r5ya_ |
|  | 59.8 | 16 | Fold:TIM beta/alpha-barrel Superfamily:tRNA-guanine transglycosylase Family:tRNA-guanine transglycosylase
9 | c2x48B_ |
|  | 54.4 | 9 | PDB header:viral protein Chain: B: PDB Molecule:cag38821; PDBTitle: orf 55 from sulfolobus islandicus rudivirus 1
10 | c2bpbB_ |
|  | 54.1 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella
11 | c3lm3A_ |
|  | 52.1 | 27 | PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative glycoside hydrolase/deacetylase2 (bdi_3119) from parabacteroides distasonis at 1.44 a resolution
12 | d1jmxa1 |
|  | 46.9 | 13 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
13 | c3d3mB_ |
|  | 46.4 | 6 | PDB header:translation Chain: B: PDB Molecule:eukaryotic translation initiation factor 4 gamma PDBTitle: the crystal structure of the c-terminal region of death2 associated protein 5(dap5)
14 | d1fs1b1 |
|  | 42.6 | 32 | Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like
15 | d1fs2b1 |
|  | 40.6 | 32 | Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like
16 | d1ug3a2 |
|  | 39.1 | 11 | Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:MIF4G domain-like
17 | c1iq8B_ |
|  | 38.6 | 38 | PDB header:transferase Chain: B: PDB Molecule:archaeosine trna-guanine transglycosylase; PDBTitle: crystal structure of archaeosine trna-guanine2 transglycosylase from pyrococcus horikoshii
18 | d1iq8a1 |
|  | 38.2 | 20 | Fold:TIM beta/alpha-barrel Superfamily:tRNA-guanine transglycosylase Family:tRNA-guanine transglycosylase
19 | d1jm7a_ |
|  | 37.1 | 21 | Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4
20 | d1nexa1 |
|  | 35.8 | 21 | Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like
21 | c2ashB_ |
| not modelled | 35.5 | 25 | PDB header:transferase Chain: B: PDB Molecule:queuine trna-ribosyltransferase; PDBTitle: crystal structure of queuine trna-ribosyltransferase (ec 2.4.2.29)2 (trna-guanine (tm1561) from thermotoga maritima at 1.90 a resolution
22 | d1ef4a_ |
| not modelled | 35.4 | 21 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:RNA polymerase subunit RPB10 Family:RNA polymerase subunit RPB10
23 | c2jq5A_ |
| not modelled | 35.1 | 14 | PDB header:structural genomics Chain: A: PDB Molecule:sec-c motif; PDBTitle: solution structure of rpa3114, a sec-c motif containing2 protein from rhodopseudomonas palustris; northeast3 structural genomics consortium target rpt5 / ontario4 center for structural proteomics target rp3097
24 | d6paxa1 |
| not modelled | 33.7 | 19 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain
25 | c2eyqA_ |
| not modelled | 32.9 | 33 | PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor
26 | c1u78A_ |
| not modelled | 30.8 | 14 | PDB header:dna binding protein/dna Chain: A: PDB Molecule:transposable element tc3 transposase; PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
27 | c3floD_ |
| not modelled | 29.1 | 21 | PDB header:transferase Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a; PDBTitle: crystal structure of the carboxyl-terminal domain of yeast2 dna polymerase alpha in complex with its b subunit
28 | d2gmga1 |
| not modelled | 28.6 | 42 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PF0610-like
29 | d1wgna_ |
| not modelled | 27.0 | 22 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
30 | c2opfA_ |
| not modelled | 26.3 | 67 | PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate
31 | c3b40A_ |
| not modelled | 25.1 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:probable dipeptidase; PDBTitle: crystal structure of the probable dipeptidase pvdm from2 pseudomonas aeruginosa
32 | d1k78a1 |
| not modelled | 24.4 | 15 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain
33 | d1p7ia_ |
| not modelled | 23.9 | 25 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
34 | c3hosA_ |
| not modelled | 23.3 | 21 | PDB header:transferase, dna binding protein/dna Chain: A: PDB Molecule:transposable element mariner, complete cds; PDBTitle: crystal structure of the mariner mos1 paired end complex with mg
35 | c2qeuA_ |
| not modelled | 22.7 | 8 | PDB header:lyase Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase; PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution
36 | c3llkA_ |
| not modelled | 22.7 | 28 | PDB header:oxidoreductase Chain: A: PDB Molecule:sulfhydryl oxidase 1; PDBTitle: sulfhydryl oxidase fragment of human qsox1
37 | c3iz6X_ |
| not modelled | 22.7 | 24 | PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein s27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
38 | c3g2bA_ |
| not modelled | 21.9 | 8 | PDB header:biosynthetic protein Chain: A: PDB Molecule:coenzyme pqq synthesis protein d; PDBTitle: crystal structure of pqqd from xanthomonas campestris
39 | d1od6a_ |
| not modelled | 21.0 | 12 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase
40 | d2ovra1 |
| not modelled | 20.9 | 32 | Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like
41 | d1qxfa_ |
| not modelled | 20.5 | 18 | Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27e
42 | c2ragB_ |
| not modelled | 20.0 | 16 | PDB header:hydrolase Chain: B: PDB Molecule:dipeptidase; PDBTitle: crystal structure of aminohydrolase from caulobacter crescentus
43 | c3b9bA_ |
| not modelled | 20.0 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: structure of the e2 beryllium fluoride complex of the serca2 ca2+-atpase
44 | d1eb7a2 |
| not modelled | 20.0 | 22 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase
45 | c1ug3A_ |
| not modelled | 19.8 | 13 | PDB header:translation Chain: A: PDB Molecule:eukaryotic protein synthesis initiation factor PDBTitle: c-terminal portion of human eif4gi
46 | c2jnhA_ |
| not modelled | 19.7 | 13 | PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of the uba domain from cbl-b
47 | d1p91a_ |
| not modelled | 19.4 | 31 | Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA methyltransferase RlmA
48 | d1odfa_ |
| not modelled | 19.3 | 26 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase
49 | d2ga1a1 |
| not modelled | 18.9 | 10 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Alr1493-like
50 | c1nexC_ |
| not modelled | 18.7 | 21 | PDB header:ligase, cell cycle Chain: C: PDB Molecule:centromere dna-binding protein complex cbf3 PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex
51 | c1ztbA_ |
| not modelled | 18.7 | 15 | PDB header:ligase Chain: A: PDB Molecule:chorismate synthase; PDBTitle: crystal structure of chorismate synthase from mycobacterium2 tuberculosis
52 | c3o0rC_ |
| not modelled | 18.6 | 13 | PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment
53 | c2pmzN_ |
| not modelled | 18.2 | 18 | PDB header:translation, transferase Chain: N: PDB Molecule:dna-directed rna polymerase subunit n; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
54 | c2jr6A_ |
| not modelled | 18.0 | 33 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32
55 | c3lrqB_ |
| not modelled | 18.0 | 30 | PDB header:ligase Chain: B: PDB Molecule:e3 ubiquitin-protein ligase trim37; PDBTitle: crystal structure of the u-box domain of human ubiquitin-2 protein ligase (e3), northeast structural genomics3 consortium target hr4604d.
56 | c2js4A_ |
| not modelled | 17.9 | 44 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54
57 | c2jvwA_ |
| not modelled | 17.4 | 25 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of uncharacterized protein q5e7h1 from vibrio2 fischeri. northeast structural genomics target vfr117
58 | c2xzmO_ |
| not modelled | 17.2 | 10 | PDB header:ribosome Chain: O: PDB Molecule:rps13e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
59 | d1y0ua_ |
| not modelled | 17.1 | 22 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ArsR-like transcriptional regulators
60 | d2cwqa1 |
| not modelled | 17.0 | 13 | Fold:AhpD-like Superfamily:AhpD-like Family:TTHA0727-like
61 | c3axjB_ |
| not modelled | 16.9 | 7 | PDB header:dna binding protein Chain: B: PDB Molecule:translin associated factor x, isoform b; PDBTitle: high resolution crystal structure of c3po
62 | c2p1nD_ |
| not modelled | 16.3 | 32 | PDB header:signaling protein Chain: D: PDB Molecule:skp1-like protein 1a; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase
63 | d1lv3a_ |
| not modelled | 16.1 | 22 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Hypothetical zinc finger protein YacG
64 | c2ecgA_ |
| not modelled | 16.0 | 9 | PDB header:apoptosis Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 4; PDBTitle: solution structure of the ring domain of the baculoviral2 iap repeat-containing protein 4 from homo sapiens
65 | d2lfba_ |
| not modelled | 16.0 | 21 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
66 | d1sxjd1 |
| not modelled | 15.3 | 14 | Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain
67 | c3itcA_ |
| not modelled | 15.2 | 4 | PDB header:hydrolase Chain: A: PDB Molecule:renal dipeptidase; PDBTitle: crystal structure of sco3058 with bound citrate and glycerol
68 | d2gmya1 |
| not modelled | 15.2 | 14 | Fold:AhpD-like Superfamily:AhpD-like Family:Atu0492-like
69 | d2c0sa1 |
| not modelled | 14.9 | 43 | Fold:ROP-like Superfamily:BAS1536-like Family:BAS1536-like
70 | c3s93B_ |
| not modelled | 14.5 | 12 | PDB header:transcription Chain: B: PDB Molecule:tudor domain-containing protein 5; PDBTitle: crystal structure of conserved motif in tdrd5
71 | d1itua_ |
| not modelled | 14.5 | 12 | Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Renal dipeptidase
72 | c3a44D_ |
| not modelled | 14.5 | 36 | PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form
73 | c2d9sA_ |
| not modelled | 14.4 | 10 | PDB header:ligase Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase; PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna
74 | d1dl6a_ |
| not modelled | 14.4 | 25 | Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain
75 | c3izbX_ |
| not modelled | 14.3 | 33 | PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein rps27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
76 | c3lpeF_ |
| not modelled | 14.3 | 24 | PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii
77 | c1b6aA_ |
| not modelled | 14.3 | 21 | PDB header:angiogenesis inhibitor Chain: A: PDB Molecule:methionine aminopeptidase; PDBTitle: human methionine aminopeptidase 2 complexed with tnp-470
78 | d2c2vv1 |
| not modelled | 14.2 | 13 | Fold:RING/U-box Superfamily:RING/U-box Family:U-box
79 | c3pjaK_ |
| not modelled | 13.9 | 13 | PDB header:hydrolase Chain: K: PDB Molecule:translin-associated protein x; PDBTitle: crystal structure of human c3po complex
80 | d2cqxa1 |
| not modelled | 13.8 | 11 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
81 | c3qw4B_ |
| not modelled | 13.8 | 15 | PDB header:transferase, lyase Chain: B: PDB Molecule:ump synthase; PDBTitle: structure of leishmania donovani ump synthase
82 | c1dl0A_ |
| not modelled | 13.7 | 46 | PDB header:toxin Chain: A: PDB Molecule:j-atracotoxin-hv1c; PDBTitle: solution structure of the insecticidal neurotoxin j-2 atracotoxin-hv1c
83 | d1dl0a_ |
| not modelled | 13.7 | 46 | Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins
84 | d2jnya1 |
| not modelled | 13.6 | 33 | Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like
85 | c2xzm6_ |
| not modelled | 13.4 | 47 | PDB header:ribosome Chain: 6: PDB Molecule:rps27e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
86 | c1nl0G_ |
| not modelled | 13.3 | 50 | PDB header:immune system Chain: G: PDB Molecule:factor ix; PDBTitle: crystal structure of human factor ix gla domain in complex2 of an inhibitory antibody, 10c12
87 | d1jgga_ |
| not modelled | 13.1 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
88 | c3l6aA_ |
| not modelled | 13.0 | 5 | PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 4 gamma 2; PDBTitle: crystal structure of the c-terminal region of human p97
89 | d1o6ba_ |
| not modelled | 12.9 | 8 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase
90 | c3fdgA_ |
| not modelled | 12.6 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:dipeptidase ac. metallo peptidase. merops family m19; PDBTitle: the crystal structure of the dipeptidase ac, metallo peptidase. merops2 family m19
91 | d1xkpa1 |
| not modelled | 12.3 | 14 | Fold:Type III secretion system domain Superfamily:Type III secretion system domain Family:LcrE-like
92 | c2ao9H_ |
| not modelled | 12.2 | 13 | PDB header:structural genomics, unknown function Chain: H: PDB Molecule:phage protein; PDBTitle: structural genomics, the crystal structure of a phage protein2 (phbc6a51) from bacillus cereus atcc 14579
93 | c2kpiA_ |
| not modelled | 12.1 | 44 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sco3027; PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58
94 | d2ao9a1 |
| not modelled | 12.0 | 13 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Nanomeric phage protein-like
95 | c1ee8A_ |
| not modelled | 11.9 | 57 | PDB header:dna binding protein Chain: A: PDB Molecule:mutm (fpg) protein; PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8
96 | d1d8ja_ |
| not modelled | 11.9 | 33 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:The central core domain of TFIIE beta
97 | c3bg3B_ |
| not modelled | 11.9 | 10 | PDB header:ligase Chain: B: PDB Molecule:pyruvate carboxylase, mitochondrial; PDBTitle: crystal structure of human pyruvate carboxylase (missing2 the biotin carboxylase domain at the n-terminus)
98 | c2do6A_ |
| not modelled | 11.9 | 15 | PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna
99 | d1vnda_ |
| not modelled | 11.8 | 8 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain