Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	P	H	N	P	I	R	V	V	V	G	P	A	N	Y	F	S	H	P	G	S	F	N	H	L	H	D	F	F	T	D	E	Q	L	S	R	A	V	W	I	Y	G	K	R	A	I	A	A	A	Q	T	K	L	P	P	A	F	G	L	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	A	K	H	I	L	F	R	G	H	C	S	E	S	D	V	Q	Q	L	A	A	E	S	G	D	D	R	S	V	V	I	G	V	G	G	G	A	L	L	D	T	A	K	A	L	A	R	R	L	G	L	P	F	V	A	V	P	T	I	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	T	C	A	A	W	T	P	L	S	V	W	Y	N	D	A	G	Q	A	L	H	Y	E	I	F	D	D	A	N	F	M	V	L	V	E	P	E	I	I	L	N	A	P	Q	Q	Y	L	L	A	G	I	G	D	T	L	A	K	W	Y	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	V	V	L	A	P	Q	P	E	T	L	P	L	T	V	R	L	G	I	N	N	A	Q	A	I	R	D	V	L	L	N	S	S	E	Q	A	L	S	D	Q	Q	N	Q	Q	L	T	Q	S	F	C	D	V	V	D	A	I	I	A	G	G
Secondary structure
SS confidence
Disorder																																														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	M	V	G	G	L	G	D	R	F	T	R	V	A	A	A	H	A	V	H	N	G	L	T	V	L	P	Q	T	E	K	F	L	H	G	T	K	V	A	Y	G	I	L	V	Q	S	A	L	L	G	Q	D	D	V	L	A	Q	L	T	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	Y	Q	R	F	H	L	P	T	T	L	A	E	L	E	V	D	I	N	N	Q	A	E	I	D	K	V	I	A	H	T	L	R	P	V	E	S	I	H	Y	L	P	V	T	L	T	P	D	T	L	R	A	A	F	K	K	V	E	S	F
Secondary structure
SS confidence
Disorder																																																												?	?
Disorder confidence
		.	.
Sequence		K	A
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ta9 chain A Region: 7 - 361 Aligned: 347 Modelled: 355 Confidence: 100.0% Identity: 30% PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol dehydrogenase; PDBTitle: crystal structure of glycerol dehydrogenase from schizosaccharomyces2 pombe Phyre2 PDB 1jq5 chain A Region: 7 - 360 Aligned: 348 Modelled: 354 Confidence: 100.0% Identity: 30% Fold: Dehydroquinate synthase-like Superfamily: Dehydroquinate synthase-like Family: Iron-containing alcohol dehydrogenase Phyre2 PDB 3uhj chain E Region: 7 - 360 Aligned: 344 Modelled: 354 Confidence: 100.0% Identity: 28% PDB header:oxidoreductase Chain: E: PDB Molecule:probable glycerol dehydrogenase; PDBTitle: crystal structure of a probable glycerol dehydrogenase from2 sinorhizobium meliloti 1021 Phyre2 PDB 1kq3 chain A Region: 6 - 360 Aligned: 350 Modelled: 355 Confidence: 100.0% Identity: 32% Fold: Dehydroquinate synthase-like Superfamily: Dehydroquinate synthase-like Family: Iron-containing alcohol dehydrogenase Phyre2 PDB 3ox4 chain D Region: 9 - 357 Aligned: 327 Modelled: 349 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: D: PDB Molecule:alcohol dehydrogenase 2; PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor Phyre2 PDB 3bfj chain K Region: 9 - 357 Aligned: 327 Modelled: 349 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: K: PDB Molecule:1,3-propanediol oxidoreductase; PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase Phyre2 PDB 1vlj chain A Region: 3 - 357 Aligned: 334 Modelled: 355 Confidence: 100.0% Identity: 18% Fold: Dehydroquinate synthase-like Superfamily: Dehydroquinate synthase-like Family: Iron-containing alcohol dehydrogenase Phyre2 PDB 1rrm chain A Region: 9 - 357 Aligned: 325 Modelled: 341 Confidence: 100.0% Identity: 17% Fold: Dehydroquinate synthase-like Superfamily: Dehydroquinate synthase-like Family: Iron-containing alcohol dehydrogenase Phyre2 PDB 1oj7 chain A Region: 9 - 358 Aligned: 326 Modelled: 350 Confidence: 100.0% Identity: 18% Fold: Dehydroquinate synthase-like Superfamily: Dehydroquinate synthase-like Family: Iron-containing alcohol dehydrogenase Phyre2 PDB 3iv7 chain B Region: 6 - 357 Aligned: 325 Modelled: 345 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: B: PDB Molecule:alcohol dehydrogenase iv; PDBTitle: crystal structure of iron-containing alcohol dehydrogenase2 (np_602249.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.07 a resolution Phyre2 PDB 3hl0 chain B Region: 5 - 357 Aligned: 324 Modelled: 345 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: B: PDB Molecule:maleylacetate reductase; PDBTitle: crystal structure of maleylacetate reductase from agrobacterium2 tumefaciens Phyre2 PDB 3jzd chain A Region: 5 - 357 Aligned: 324 Modelled: 353 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of putative alcohol dehedrogenase (yp_298327.1) from2 ralstonia eutropha jmp134 at 2.10 a resolution Phyre2 PDB 1o2d chain A Region: 6 - 357 Aligned: 322 Modelled: 334 Confidence: 100.0% Identity: 20% Fold: Dehydroquinate synthase-like Superfamily: Dehydroquinate synthase-like Family: Iron-containing alcohol dehydrogenase Phyre2 PDB 3ce9 chain A Region: 9 - 361 Aligned: 335 Modelled: 353 Confidence: 100.0% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol dehydrogenase; PDBTitle: crystal structure of glycerol dehydrogenase (np_348253.1) from2 clostridium acetobutylicum at 2.37 a resolution Phyre2 PDB 3rf7 chain A Region: 6 - 357 Aligned: 322 Modelled: 349 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of an iron-containing alcohol dehydrogenase2 (sden_2133) from shewanella denitrificans os-217 at 2.12 a resolution Phyre2 PDB 3okf chain A Region: 1 - 360 Aligned: 330 Modelled: 337 Confidence: 100.0% Identity: 14% PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae Phyre2 PDB 1sg6 chain A Region: 12 - 354 Aligned: 327 Modelled: 328 Confidence: 100.0% Identity: 15% Fold: Dehydroquinate synthase-like Superfamily: Dehydroquinate synthase-like Family: Dehydroquinate synthase, DHQS Phyre2 PDB 1xah chain A Region: 11 - 360 Aligned: 291 Modelled: 304 Confidence: 100.0% Identity: 15% PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: crystal structure of staphlyococcus aureus 3-dehydroquinate2 synthase (dhqs) in complex with zn2+ and nad+ Phyre2 PDB 3clh chain A Region: 32 - 358 Aligned: 274 Modelled: 282 Confidence: 100.0% Identity: 14% PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: crystal structure of 3-dehydroquinate synthase (dhqs)from2 helicobacter pylori Phyre2 PDB 2gru chain B Region: 14 - 357 Aligned: 322 Modelled: 323 Confidence: 100.0% Identity: 11% PDB header:lyase Chain: B: PDB Molecule:2-deoxy-scyllo-inosose synthase; PDBTitle: crystal structure of 2-deoxy-scyllo-inosose synthase2 complexed with carbaglucose-6-phosphate, nad+ and co2+ Phyre2 1 c1ta9A_ 2 d1jq5a_ 3 c3uhjE_ 4 d1kq3a_ 5 c3ox4D_ 6 c3bfjK_ 7 d1vlja_ 8 d1rrma_ 9 d1oj7a_ 10 c3iv7B_ 11 c3hl0B_ 12 c3jzdA_ 13 d1o2da_ 14 c3ce9A_ 15 c3rf7A_ 16 c3okfA_ 17 d1sg6a_ 18 c1xahA_ 19 c3clhA_ 20 c2gruB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1ta9A_ 100.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol dehydrogenase; PDBTitle: crystal structure of glycerol dehydrogenase from schizosaccharomyces2 pombe 2 d1jq5a_ 100.0 30 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 3 c3uhjE_ 100.0 28 PDB header:oxidoreductase Chain: E: PDB Molecule:probable glycerol dehydrogenase; PDBTitle: crystal structure of a probable glycerol dehydrogenase from2 sinorhizobium meliloti 1021 4 d1kq3a_ 100.0 32 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 5 c3ox4D_ 100.0 16 PDB header:oxidoreductase Chain: D: PDB Molecule:alcohol dehydrogenase 2; PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor 6 c3bfjK_ 100.0 20 PDB header:oxidoreductase Chain: K: PDB Molecule:1,3-propanediol oxidoreductase; PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase 7 d1vlja_ 100.0 18 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 8 d1rrma_ 100.0 17 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 9 d1oj7a_ 100.0 18 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 10 c3iv7B_ 100.0 18 PDB header:oxidoreductase Chain: B: PDB Molecule:alcohol dehydrogenase iv; PDBTitle: crystal structure of iron-containing alcohol dehydrogenase2 (np_602249.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.07 a resolution 11 c3hl0B_ 100.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:maleylacetate reductase; PDBTitle: crystal structure of maleylacetate reductase from agrobacterium2 tumefaciens 12 c3jzdA_ 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of putative alcohol dehedrogenase (yp_298327.1) from2 ralstonia eutropha jmp134 at 2.10 a resolution 13 d1o2da_ 100.0 20 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 14 c3ce9A_ 100.0 14 PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol dehydrogenase; PDBTitle: crystal structure of glycerol dehydrogenase (np_348253.1) from2 clostridium acetobutylicum at 2.37 a resolution 15 c3rf7A_ 100.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of an iron-containing alcohol dehydrogenase2 (sden_2133) from shewanella denitrificans os-217 at 2.12 a resolution 16 c3okfA_ 100.0 14 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae 17 d1sg6a_ 100.0 15 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Dehydroquinate synthase, DHQS 18 c1xahA_ 100.0 15 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: crystal structure of staphlyococcus aureus 3-dehydroquinate2 synthase (dhqs) in complex with zn2+ and nad+ 19 c3clhA_ 100.0 14 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: crystal structure of 3-dehydroquinate synthase (dhqs)from2 helicobacter pylori 20 c2gruB_ 100.0 11 PDB header:lyase Chain: B: PDB Molecule:2-deoxy-scyllo-inosose synthase; PDBTitle: crystal structure of 2-deoxy-scyllo-inosose synthase2 complexed with carbaglucose-6-phosphate, nad+ and co2+ 21 d1ujna_ not modelled 100.0 17 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Dehydroquinate synthase, DHQS 22 c3orsD_ not modelled 97.2 15 PDB header:isomerase,biosynthetic protein Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus 23 d2jgra1 not modelled 97.2 14 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 24 c3rggD_ not modelled 97.2 14 PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein; PDBTitle: crystal structure of treponema denticola pure bound to air 25 d1qcza_ not modelled 97.2 18 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 26 d1o4va_ not modelled 97.1 18 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 27 c2fw9A_ not modelled 97.1 15 PDB header:lyase Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8 28 d1u11a_ not modelled 97.0 13 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 29 c2qv7A_ not modelled 97.0 16 PDB header:transferase Chain: A: PDB Molecule:diacylglycerol kinase dgkb; PDBTitle: crystal structure of diacylglycerol kinase dgkb in complex with adp2 and mg 30 c3lp6D_ not modelled 97.0 15 PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution 31 d2qv7a1 not modelled 97.0 16 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 32 d2p1ra1 not modelled 96.8 14 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 33 d1xmpa_ not modelled 96.8 14 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 34 c2bonB_ not modelled 96.7 14 PDB header:transferase Chain: B: PDB Molecule:lipid kinase; PDBTitle: structure of an escherichia coli lipid kinase (yegs) 35 c3s40C_ not modelled 96.6 16 PDB header:transferase Chain: C: PDB Molecule:diacylglycerol kinase; PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne 36 d2bona1 not modelled 96.6 13 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 37 c3trhI_ not modelled 96.6 12 PDB header:lyase Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii 38 d1u0ta_ not modelled 96.3 17 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 39 c2ywxA_ not modelled 96.3 19 PDB header:lyase Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from methanocaldococcus jannaschii 40 c2h31A_ not modelled 96.1 17 PDB header:ligase, lyase Chain: A: PDB Molecule:multifunctional protein ade2; PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis 41 c2an1D_ not modelled 92.7 18 PDB header:transferase Chain: D: PDB Molecule:putative kinase; PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2 42 c1z0zC_ not modelled 90.9 22 PDB header:transferase Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase; PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad 43 c3pfnB_ not modelled 90.9 12 PDB header:transferase Chain: B: PDB Molecule:nad kinase; PDBTitle: crystal structure of human nad kinase 44 c2i2aA_ not modelled 90.8 18 PDB header:transferase Chain: A: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase 1; PDBTitle: crystal structure of lmnadk1 from listeria monocytogenes 45 d1z0sa1 not modelled 90.8 22 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 46 c2xecD_ not modelled 90.7 16 PDB header:isomerase Chain: D: PDB Molecule:putative maleate isomerase; PDBTitle: nocardia farcinica maleate cis-trans isomerase bound to2 tris 47 d2ji7a1 not modelled 89.9 16 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 48 c1yt5A_ not modelled 87.4 17 PDB header:transferase Chain: A: PDB Molecule:inorganic polyphosphate/atp-nad kinase; PDBTitle: crystal structure of nad kinase from thermotoga maritima 49 c2q5cA_ not modelled 86.5 15 PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum 50 d1v4va_ not modelled 86.4 27 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 51 c3afoB_ not modelled 85.8 10 PDB header:transferase Chain: B: PDB Molecule:nadh kinase pos5; PDBTitle: crystal structure of yeast nadh kinase complexed with nadh 52 c2hqbA_ not modelled 85.8 10 PDB header:transcription Chain: A: PDB Molecule:transcriptional activator of comk gene; PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans 53 d1pvda1 not modelled 85.4 17 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 54 d1ovma1 not modelled 85.2 15 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 55 d2pjua1 not modelled 83.8 10 Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like 56 d1q6za1 not modelled 83.5 15 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 57 d1pfka_ not modelled 82.7 15 Fold:Phosphofructokinase Superfamily:Phosphofructokinase Family:Phosphofructokinase 58 d2ez9a1 not modelled 82.6 21 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 59 d1ybha1 not modelled 81.3 14 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 60 c3hi0B_ not modelled 81.0 14 PDB header:hydrolase Chain: B: PDB Molecule:putative exopolyphosphatase; PDBTitle: crystal structure of putative exopolyphosphatase (17739545) from2 agrobacterium tumefaciens str. c58 (dupont) at 2.30 a resolution 61 c2fqxA_ not modelled 80.8 13 PDB header:transport protein Chain: A: PDB Molecule:membrane lipoprotein tmpc; PDBTitle: pnra from treponema pallidum complexed with guanosine 62 c1zxxA_ not modelled 80.5 17 PDB header:transferase Chain: A: PDB Molecule:6-phosphofructokinase; PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii 63 d4pfka_ not modelled 80.2 20 Fold:Phosphofructokinase Superfamily:Phosphofructokinase Family:Phosphofructokinase 64 d2ihta1 not modelled 80.1 16 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 65 d1zpda1 not modelled 79.9 18 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 66 c3opyB_ not modelled 79.6 25 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructo-1-kinase beta-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 67 c3opyH_ not modelled 79.6 25 PDB header:transferase Chain: H: PDB Molecule:6-phosphofructo-1-kinase beta-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 68 c3rfqC_ not modelled 78.9 13 PDB header:biosynthetic protein Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2; PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum 69 c2floA_ not modelled 78.8 12 PDB header:hydrolase Chain: A: PDB Molecule:exopolyphosphatase; PDBTitle: crystal structure of exopolyphosphatase (ppx) from e. coli o157:h7 70 c3opyE_ not modelled 78.5 16 PDB header:transferase Chain: E: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 71 c3o8oB_ not modelled 77.8 25 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase subunit beta; PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae 72 d1t9ba1 not modelled 76.6 17 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 73 d1xi8a3 not modelled 76.6 17 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 74 c1t6dB_ not modelled 76.0 14 PDB header:hydrolase Chain: B: PDB Molecule:exopolyphosphatase; PDBTitle: miras phasing of the aquifex aeolicus ppx/gppa phosphatase: crystal2 structure of the type ii variant 75 c3opyG_ not modelled 75.7 16 PDB header:transferase Chain: G: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 76 c3mdqA_ not modelled 75.6 9 PDB header:hydrolase Chain: A: PDB Molecule:exopolyphosphatase; PDBTitle: crystal structure of an exopolyphosphatase (chu_0316) from cytophaga2 hutchinsonii atcc 33406 at 1.50 a resolution 77 d2djia1 not modelled 74.1 15 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 78 d2g2ca1 not modelled 72.6 19 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 79 c2higA_ not modelled 72.6 15 PDB header:transferase Chain: A: PDB Molecule:6-phospho-1-fructokinase; PDBTitle: crystal structure of phosphofructokinase apoenzyme from trypanosoma2 brucei. 80 c3k2qA_ not modelled 72.1 20 PDB header:transferase Chain: A: PDB Molecule:pyrophosphate-dependent phosphofructokinase; PDBTitle: crystal structure of pyrophosphate-dependent2 phosphofructokinase from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr88 81 c2g4rB_ not modelled 71.7 17 PDB header:biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein; PDBTitle: anomalous substructure of moga 82 c3cerD_ not modelled 71.4 10 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:possible exopolyphosphatase-like protein; PDBTitle: crystal structure of the exopolyphosphatase-like protein2 q8g5j2. northeast structural genomics consortium target3 blr13 83 d3ckma1 not modelled 67.9 8 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 84 d2f48a1 not modelled 66.5 17 Fold:Phosphofructokinase Superfamily:Phosphofructokinase Family:Phosphofructokinase 85 c3cf4G_ not modelled 66.5 8 PDB header:oxidoreductase Chain: G: PDB Molecule:acetyl-coa decarboxylase/synthase epsilon subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 86 c2x7jA_ not modelled 65.8 14 PDB header:transferase Chain: A: PDB Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene PDBTitle: structure of the menaquinone biosynthesis protein mend from2 bacillus subtilis 87 c3o8oC_ not modelled 65.8 19 PDB header:transferase Chain: C: PDB Molecule:6-phosphofructokinase subunit alpha; PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae 88 d1o8bb1 not modelled 64.2 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 89 c1powA_ not modelled 64.2 16 PDB header:oxidoreductase(oxygen as acceptor) Chain: A: PDB Molecule:pyruvate oxidase; PDBTitle: the refined structures of a stabilized mutant and of wild-type2 pyruvate oxidase from lactobacillus plantarum 90 d1ozha1 not modelled 63.8 13 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 91 c2dgdD_ not modelled 63.7 11 PDB header:lyase Chain: D: PDB Molecule:223aa long hypothetical arylmalonate decarboxylase; PDBTitle: crystal structure of st0656, a function unknown protein from2 sulfolobus tokodaii 92 c2j289_ not modelled 63.5 15 PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs 93 c3o8nA_ not modelled 63.4 23 PDB header:transferase Chain: A: PDB Molecule:6-phosphofructokinase, muscle type; PDBTitle: structure of phosphofructokinase from rabbit skeletal muscle 94 c3l4eA_ not modelled 60.9 16 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized peptidase lmo0363; PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e 95 c2pjuD_ not modelled 60.8 11 PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr 96 c2j37W_ not modelled 58.8 9 PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs 97 c3sg0A_ not modelled 58.4 12 PDB header:signaling protein Chain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: the crystal structure of an extracellular ligand-binding receptor from2 rhodopseudomonas palustris haa2 98 c3nhzA_ not modelled 58.3 19 PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra 99 c3rfoA_ not modelled 58.2 11 PDB header:transferase Chain: A: PDB Molecule:methionyl-trna formyltransferase; PDBTitle: crystal structure of methyionyl-trna formyltransferase from bacillus2 anthracis 100 c3dm5A_ not modelled 57.8 11 PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. 101 c2og2A_ not modelled 56.1 20 PDB header:protein transport Chain: A: PDB Molecule:putative signal recognition particle receptor; PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana 102 d1y5ea1 not modelled 55.9 21 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 103 d1vmea1 not modelled 55.6 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 104 c2cnwF_ not modelled 55.6 16 PDB header:signal recognition Chain: F: PDB Molecule:cell division protein ftsy; PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy 105 c2iy3A_ not modelled 54.7 11 PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome 106 d1mkza_ not modelled 54.5 19 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 107 c2w93A_ not modelled 53.3 16 PDB header:lyase Chain: A: PDB Molecule:pyruvate decarboxylase isozyme 1; PDBTitle: crystal structure of the saccharomyces cerevisiae pyruvate2 decarboxylase variant e477q in complex with the surrogate3 pyruvamide 108 c3s99A_ not modelled 53.3 6 PDB header:lipid binding protein Chain: A: PDB Molecule:basic membrane lipoprotein; PDBTitle: crystal structure of a basic membrane lipoprotein from brucella2 melitensis, iodide soak 109 c2pjkA_ not modelled 53.1 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii 110 d1fmta2 not modelled 52.3 14 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 111 c2zwmA_ not modelled 52.3 9 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein yycf; PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis 112 c3hbmA_ not modelled 52.2 13 PDB header:hydrolase Chain: A: PDB Molecule:udp-sugar hydrolase; PDBTitle: crystal structure of pseg from campylobacter jejuni 113 d1di6a_ not modelled 52.0 13 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 114 c3u7jA_ not modelled 51.7 35 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis 115 c3b9qA_ not modelled 51.6 16 PDB header:protein transport Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana 116 c2is8A_ not modelled 50.6 8 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 117 d2a9pa1 not modelled 49.9 10 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 118 c1qzwC_ not modelled 48.8 14 PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication 119 d1u3da2 not modelled 48.6 11 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 120 c3i09A_ not modelled 46.9 8 PDB header:transport protein Chain: A: PDB Molecule:periplasmic branched-chain amino acid-binding protein; PDBTitle: crystal structure of a periplasmic binding protein (bma2936) from2 burkholderia mallei at 1.80 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0