Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	S	E	G	G	K	P	G	N	V	L	T	V	N	G	N	Y	T	G	N	N	G	L	M	T	F	N	A	T	L	G	G	D	N	S	P	T	D	K	M	N	V	K	G	D	T	Q	G	N	T	R	V	R	V	D	N	I	G	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?		?																									?	?																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	G	A	Q	T	V	N	G	I	E	L	I	E	V	G	G	N	S	A	G	N	F	A	L	T	T	G	T	V	E	A	G	A	Y	V	Y	T	L	A	K	G	K	G	N	D	E	K	N	W	Y	L	T	S	K	W	D	G	V	T	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																				?															?	?	?	?		?	?								?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	D	T	P	D	P	I	N	N	P	P	V	V	D	P	E	G	P	S	V	Y	R	P	E	A	G	S	Y	I	S	N	I	A	A	A	N	S	L	F	S	H	R	L	H	D	R	L	G	E	P	Q	Y	T	D	S	L	H	S	Q	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																				?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	A	S	S	M	W	M	R	H	V	G	G	H	E	R	S	R	A	G	D	G	Q	L	N	T	Q	A	N	R	Y	V	L	Q	L	G	G	D	L	A	Q	W	S	S	N	A	Q	D	R	W	H	L	G	V	M	A	G	Y	A	N	Q
Secondary structure
SS confidence
Disorder		?	?	?									?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																	?														?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		H	S	N	T	Q	S	N	R	V	G	Y	K	S	D	G	R	I	S	G	Y	S	A	G	L	Y	A	T	W	Y	Q	N	D	A	N	K	T	G	A	Y	V	D	S	W	A	L	Y	N	W	F	D	N	S	V	S	S	D	N	R	S	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																																			?			?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	D	Y	D	S	R	G	V	T	A	S	V	E	G	G	Y	T	F	E	A	G	T	F	S	G	S	E	G	T	L	N	T	W	Y	V	Q	P	Q	A	Q	I	T	W	M	G	V	K	D	S	D	H	T	R	K	D	G	T	R	I	E
Secondary structure
SS confidence
Disorder		?	?	?																			?	?	?	?	?	?	?		?	?															?				?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		T	E	G	D	G	N	V	Q	T	R	L	G	V	K	T	Y	L	N	S	H	H	Q	R	D	D	G	K	Q	R	E	F	Q	P	Y	I	E	A	N	W	I	N	N	S	K	V	Y	A	V	K	M	N	G	Q	T	V	G	R	E	G	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?																	?	?		?	?	?	?																									?			?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Sequence		R	N	L	G	E	V	R	T	G	V	E	A	K	V	N	N	N	L	S	L	W	G	N	V	G	V	Q	L	G	D	K	G	Y	S	D	T	Q	G	M	L	G	V	K	Y	S	W
Secondary structure
SS confidence
Disorder																														?	?	?	?	?	?	?											?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3kvn chain A Region: 146 - 466 Aligned: 300 Modelled: 321 Confidence: 100.0% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:esterase esta; PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa Phyre2 PDB 3slj chain A Region: 146 - 466 Aligned: 293 Modelled: 317 Confidence: 100.0% Identity: 18% PDB header:protein transport Chain: A: PDB Molecule:serine protease espp; PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant Phyre2 PDB 3aeh chain B Region: 139 - 466 Aligned: 273 Modelled: 308 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter; PDBTitle: integral membrane domain of autotransporter hbp Phyre2 PDB 3qq2 chain C Region: 181 - 466 Aligned: 245 Modelled: 270 Confidence: 100.0% Identity: 23% PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Phyre2 PDB 2qom chain B Region: 163 - 466 Aligned: 263 Modelled: 289 Confidence: 100.0% Identity: 21% PDB header:hydrolase Chain: B: PDB Molecule:serine protease espp; PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain. Phyre2 PDB 1uyn chain X Region: 154 - 466 Aligned: 273 Modelled: 302 Confidence: 100.0% Identity: 14% Fold: Transmembrane beta-barrels Superfamily: Autotransporter Family: Autotransporter Phyre2 PDB 3ml3 chain A Region: 1 - 116 Aligned: 115 Modelled: 116 Confidence: 99.8% Identity: 34% PDB header:protein transport Chain: A: PDB Molecule:outer membrane protein icsa autotransporter; PDBTitle: crystal structure of the icsa autochaperone region Phyre2 PDB 1dab chain A Region: 3 - 118 Aligned: 110 Modelled: 116 Confidence: 99.5% Identity: 28% Fold: Single-stranded right-handed beta-helix Superfamily: Pectin lyase-like Family: Virulence factor P.69 pertactin Phyre2 PDB 3h09 chain B Region: 1 - 113 Aligned: 103 Modelled: 109 Confidence: 98.6% Identity: 28% PDB header:hydrolase Chain: B: PDB Molecule:immunoglobulin a1 protease; PDBTitle: the structure of haemophilus influenzae iga1 protease Phyre2 PDB 3syj chain A Region: 3 - 111 Aligned: 101 Modelled: 107 Confidence: 98.5% Identity: 34% PDB header:cell adhesion Chain: A: PDB Molecule:adhesion and penetration protein autotransporter; PDBTitle: crystal structure of the haemophilus influenzae hap adhesin Phyre2 PDB 1g90 chain A Region: 276 - 466 Aligned: 159 Modelled: 178 Confidence: 98.4% Identity: 12% Fold: Transmembrane beta-barrels Superfamily: OMPA-like Family: Outer membrane protein Phyre2 PDB 1p4t chain A Region: 275 - 466 Aligned: 148 Modelled: 188 Confidence: 98.4% Identity: 18% Fold: Transmembrane beta-barrels Superfamily: OMPA-like Family: Outer membrane protein Phyre2 PDB 2jmm chain A Region: 276 - 466 Aligned: 144 Modelled: 161 Confidence: 98.3% Identity: 18% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein Phyre2 PDB 2x27 chain X Region: 268 - 466 Aligned: 178 Modelled: 199 Confidence: 98.3% Identity: 15% PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein oprg; PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa Phyre2 PDB 2k0l chain A Region: 276 - 466 Aligned: 166 Modelled: 174 Confidence: 98.3% Identity: 13% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. Phyre2 PDB 2f1t chain B Region: 306 - 466 Aligned: 137 Modelled: 144 Confidence: 98.1% Identity: 12% PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw Phyre2 PDB 1qjp chain A Region: 276 - 466 Aligned: 132 Modelled: 146 Confidence: 98.1% Identity: 15% Fold: Transmembrane beta-barrels Superfamily: OMPA-like Family: Outer membrane protein Phyre2 PDB 3nb3 chain C Region: 276 - 466 Aligned: 132 Modelled: 146 Confidence: 98.1% Identity: 15% PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components Phyre2 PDB 1qj8 chain A Region: 306 - 466 Aligned: 131 Modelled: 161 Confidence: 97.8% Identity: 9% Fold: Transmembrane beta-barrels Superfamily: OMPA-like Family: Outer membrane protein Phyre2 PDB 2lhf chain A Region: 228 - 466 Aligned: 154 Modelled: 178 Confidence: 97.8% Identity: 17% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein h1; PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles Phyre2 1 c3kvnA_ 2 c3sljA_ 3 c3aehB_ 4 c3qq2C_ 5 c2qomB_ 6 d1uynx_ 7 c3ml3A_ 8 d1daba_ 9 c3h09B_ 10 c3syjA_ 11 d1g90a_ 12 d1p4ta_ 13 c2jmmA_ 14 c2x27X_ 15 c2k0lA_ 16 c2f1tB_ 17 d1qjpa_ 18 c3nb3C_ 19 d1qj8a_ 20 c2lhfA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3kvnA_ 100.0 16 PDB header:hydrolase Chain: A: PDB Molecule:esterase esta; PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa 2 c3sljA_ 100.0 18 PDB header:protein transport Chain: A: PDB Molecule:serine protease espp; PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant 3 c3aehB_ 100.0 20 PDB header:hydrolase Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter; PDBTitle: integral membrane domain of autotransporter hbp 4 c3qq2C_ 100.0 23 PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka 5 c2qomB_ 100.0 21 PDB header:hydrolase Chain: B: PDB Molecule:serine protease espp; PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain. 6 d1uynx_ 100.0 14 Fold:Transmembrane beta-barrels Superfamily:Autotransporter Family:Autotransporter 7 c3ml3A_ 99.8 34 PDB header:protein transport Chain: A: PDB Molecule:outer membrane protein icsa autotransporter; PDBTitle: crystal structure of the icsa autochaperone region 8 d1daba_ 99.5 28 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Virulence factor P.69 pertactin 9 c3h09B_ 98.6 28 PDB header:hydrolase Chain: B: PDB Molecule:immunoglobulin a1 protease; PDBTitle: the structure of haemophilus influenzae iga1 protease 10 c3syjA_ 98.5 34 PDB header:cell adhesion Chain: A: PDB Molecule:adhesion and penetration protein autotransporter; PDBTitle: crystal structure of the haemophilus influenzae hap adhesin 11 d1g90a_ 98.4 12 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 12 d1p4ta_ 98.4 18 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 13 c2jmmA_ 98.3 18 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein 14 c2x27X_ 98.3 15 PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein oprg; PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa 15 c2k0lA_ 98.3 13 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. 16 c2f1tB_ 98.1 12 PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw 17 d1qjpa_ 98.1 15 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 18 c3nb3C_ 98.1 15 PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components 19 d1qj8a_ 97.8 9 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 20 c2lhfA_ 97.8 17 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein h1; PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles 21 c3qraA_ not modelled 97.6 11 PDB header:cell invasion Chain: A: PDB Molecule:attachment invasion locus protein; PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis 22 c3ak5B_ not modelled 97.2 15 PDB header:hydrolase Chain: B: PDB Molecule:hemoglobin-binding protease hbp; PDBTitle: hemoglobin protease (hbp) passenger missing domain-2 23 c2iwvD_ not modelled 96.2 13 PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation 24 d2zfga1 not modelled 95.0 24 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 25 c1wxrA_ not modelled 94.9 18 PDB header:hydrolase Chain: A: PDB Molecule:haemoglobin protease; PDBTitle: crystal structure of heme binding protein, an2 autotransporter hemoglobine protease from pathogenic3 escherichia coli 26 d1osma_ not modelled 94.7 26 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 27 d1phoa_ not modelled 94.3 21 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 28 c2x4mD_ not modelled 94.2 8 PDB header:hydrolase Chain: D: PDB Molecule:coagulase/fibrinolysin; PDBTitle: yersinia pestis plasminogen activator pla 29 c3nsgA_ not modelled 93.4 27 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi 30 c2wjqA_ not modelled 91.6 9 PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. 31 d3prna_ not modelled 91.6 12 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 32 d1i78a_ not modelled 90.8 12 Fold:Transmembrane beta-barrels Superfamily:OMPT-like Family:Outer membrane protease OMPT 33 d2pora_ not modelled 90.7 12 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 34 c3brzA_ not modelled 90.1 13 PDB header:transport protein Chain: A: PDB Molecule:todx; PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx 35 c3dwoX_ not modelled 88.2 16 PDB header:membrane protein Chain: X: PDB Molecule:probable outer membrane protein; PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue 36 c3bryB_ not modelled 87.1 16 PDB header:transport protein Chain: B: PDB Molecule:tbux; PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux 37 c3a2rX_ not modelled 83.4 13 PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein ii; PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis 38 d2fgqx1 not modelled 82.5 10 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 39 d1t16a_ not modelled 68.9 9 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Outer membrane protein transport protein 40 c3cslB_ not modelled 45.4 11 PDB header:membrane protein/heme binding protein Chain: B: PDB Molecule:hasr protein; PDBTitle: structure of the serratia marcescens hemophore receptor hasr in2 complex with its hemophore hasa and heme 41 c2hdiA_ not modelled 45.1 16 PDB header:protein transport,antimicrobial protein Chain: A: PDB Molecule:colicin i receptor; PDBTitle: crystal structure of the colicin i receptor cir from e.coli in complex2 with receptor binding domain of colicin ia. 42 c3dzmB_ not modelled 44.3 14 PDB header:unknown function Chain: B: PDB Molecule:hypothetical conserved protein; PDBTitle: crystal structure of a major outer membrane protein from thermus2 thermophilus hb27 43 d2vdfa1 not modelled 38.8 11 Fold:Transmembrane beta-barrels Superfamily:OMPT-like Family:Outer membrane adhesin/invasin OpcA 44 c2ervA_ not modelled 25.4 15 PDB header:membrane protein Chain: A: PDB Molecule:hypothetical protein paer03002360; PDBTitle: crystal structure of the outer membrane enzyme pagl 45 c2o4vA_ not modelled 20.4 12 PDB header:membrane protein Chain: A: PDB Molecule:porin p; PDBTitle: an arginine ladder in oprp mediates phosphate specific transfer across2 the outer membrane 46 d1cyga1 not modelled 19.7 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 47 c2iahA_ not modelled 19.1 16 PDB header:membrane protein Chain: A: PDB Molecule:ferripyoverdine receptor; PDBTitle: crystal structure of the ferripyoverdine receptor of the outer2 membrane of pseudomonas aeruginosa bound to ferripyoverdine. 48 d2gufa1 not modelled 18.0 9 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Ligand-gated protein channel 49 c2wkdA_ not modelled 14.3 25 PDB header:dna binding protein Chain: A: PDB Molecule:orf34p2; PDBTitle: crystal structure of a double ile-to-met mutant of protein2 orf34 from lactococcus phage p2 50 c1xkwA_ not modelled 12.9 12 PDB header:membrane protein Chain: A: PDB Molecule:fe(iii)-pyochelin receptor; PDBTitle: pyochelin outer membrane receptor fpta from pseudomonas2 aeruginosa 51 d2gr8a1 not modelled 12.7 19 Fold:Pili subunits Superfamily:Pili subunits Family:YadA C-terminal domain-like 52 d2icwj1 not modelled 10.7 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 53 d1n7va_ not modelled 9.7 16 Fold:Adsorption protein p2 Superfamily:Adsorption protein p2 Family:Adsorption protein p2 54 d2icya1 not modelled 9.7 10 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 55 d1ahsa_ not modelled 9.5 40 Fold:Viral protein domain Superfamily:Viral protein domain Family:Top domain of virus capsid protein 56 c3emoA_ not modelled 9.4 19 PDB header:membrane protein/cell adhesion Chain: A: PDB Molecule:hia (adhesin); PDBTitle: crystal structure of transmembrane hia 973-1098 57 d1bvp12 not modelled 8.8 33 Fold:Viral protein domain Superfamily:Viral protein domain Family:Top domain of virus capsid protein 58 d2dd8l1 not modelled 8.6 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 59 c2gr7C_ not modelled 8.3 19 PDB header:membrane protein Chain: C: PDB Molecule:adhesin; PDBTitle: hia 992-1098 60 d2gr7a1 not modelled 8.3 19 Fold:Pili subunits Superfamily:Pili subunits Family:YadA C-terminal domain-like 61 c1xkhC_ not modelled 7.7 15 PDB header:membrane protein Chain: C: PDB Molecule:ferripyoverdine receptor; PDBTitle: pyoverdine outer membrane receptor fpva from pseudomonas aeruginosa2 pao1 bound to pyoverdine 62 d1cgta1 not modelled 7.4 47 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 63 d1fepa_ not modelled 6.8 16 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Ligand-gated protein channel 64 d1lila1 not modelled 6.4 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 65 d1mfal1 not modelled 6.3 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 66 d1qhoa1 not modelled 6.2 41 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 67 d3bmva1 not modelled 6.2 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 68 c2gjhA_ not modelled 6.2 36 PDB header:de novo protein Chain: A: PDB Molecule:designed protein; PDBTitle: nmr structure of cfr (c-terminal fragment of2 computationally designed novel-topology protein top7) 69 c1al0B_ not modelled 6.1 31 PDB header:virus Chain: B: PDB Molecule:scaffolding protein gpb; PDBTitle: procapsid of bacteriophage phix174 70 d1w72l1 not modelled 5.9 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 71 c2fqhA_ not modelled 5.9 57 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ta0938; PDBTitle: nmr structure of hypothetical protein ta0938 from2 termoplasma acidophilum 72 c3orjA_ not modelled 5.9 18 PDB header:sugar binding protein Chain: A: PDB Molecule:sugar-binding protein; PDBTitle: crystal structure of a sugar-binding protein (bacova_04391) from2 bacteroides ovatus at 2.16 a resolution 73 d1adql1 not modelled 5.6 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 74 d1nsnh1 not modelled 5.5 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 75 c2f6iG_ not modelled 5.5 50 PDB header:hydrolase Chain: G: PDB Molecule:atp-dependent clp protease, putative; PDBTitle: crystal structure of the clpp protease catalytic domain from2 plasmodium falciparum 76 d2ooja1 not modelled 5.4 15 Fold:AOC barrel-like Superfamily:SO1590-like Family:SO1590-like 77 c3ir3B_ not modelled 5.4 10 PDB header:lyase Chain: B: PDB Molecule:3-hydroxyacyl-thioester dehydratase 2; PDBTitle: crystal structure of human 3-hydroxyacyl-thioester dehydratase 22 (htd2) 78 c2k4tA_ not modelled 5.3 9 PDB header:membrane protein,apoptosis Chain: A: PDB Molecule:voltage-dependent anion-selective channel PDBTitle: solution structure of human vdac-1 in ldao micelles 79 c3duiB_ not modelled 5.3 32 PDB header:sugar binding protein Chain: B: PDB Molecule:beta-galactoside-binding lectin; PDBTitle: crystal structure of the oxidized cg-1b: an adhesion/growth-2 regulatory lectin from chicken

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0