Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	P	K	L	V	T	W	M	N	N	Q	R	V	G	E	L	T	K	L	A	N	G	A	H	T	F	K	Y	A	P	E	W	L	A	S	R	Y	A	R	P	L	S	L	S	L	P	L	Q	R	G	N	I	T	S	D	A	V	F	N	F
Secondary structure
SS confidence
Disorder		?	?	?	?																																											?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	D	N	L	L	P	D	S	P	I	V	R	D	R	I	V	K	R	Y	H	A	K	S	R	Q	P	F	D	L	L	S	E	I	G	R	D	S	V	G	A	V	T	L	I	P	E	D	E	T	V	T	H	P	I	M	A	W	E	K	L
Secondary structure
SS confidence
Disorder																						?		?																									?	?	?	?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	E	A	R	L	E	E	V	L	T	A	Y	K	A	D	I	P	L	G	M	I	R	E	E	N	D	F	R	I	S	V	A	G	A	Q	E	K	T	A	L	L	R	I	G	N	D	W	C	I	P	K	G	I	T	P	T	T	H	I	I
Secondary structure
SS confidence
Disorder																?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		K	L	P	I	G	E	I	R	Q	P	N	A	T	L	D	L	S	Q	S	V	D	N	E	Y	Y	C	L	L	L	A	K	E	L	G	L	N	V	P	D	A	E	I	I	K	A	G	N	V	R	A	L	A	V	E	R	F	D	R	R	W
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		N	A	E	R	T	V	L	L	R	L	P	Q	E	D	M	C	Q	T	F	G	L	P	S	S	V	K	Y	E	S	D	G	G	P	G	I	A	R	I	M	A	F	L	M	G	S	S	E	A	L	K	D	R	Y	D	F	M	K	F	Q	V
Secondary structure
SS confidence
Disorder			?																			?			?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		F	Q	W	L	I	G	A	T	D	G	H	A	K	N	F	S	V	F	I	Q	A	G	G	S	Y	R	L	T	P	F	Y	D	I	I	S	A	F	P	V	L	G	G	T	G	I	H	I	S	D	L	K	L	A	M	G	L	N	A	S	K
Secondary structure
SS confidence
Disorder																																									?	?	?	?	?		?	?	?										?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		G	K	K	T	A	I	D	K	I	Y	P	R	H	F	L	A	T	A	K	V	L	R	F	P	E	V	Q	M	H	E	I	L	S	D	F	A	R	M	I	P	A	A	L	D	N	V	K	T	S	L	P	T	D	F	P	E	N	V	V	T
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Sequence		A	V	E	S	N	V	L	R	L	H	G	R	L	S	R	E	Y	G	S	K
Secondary structure
SS confidence
Disorder																		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3dnt chain B Region: 3 - 435 Aligned: 419 Modelled: 419 Confidence: 100.0% Identity: 98% PDB header:transferase Chain: B: PDB Molecule:protein hipa; PDBTitle: structures of mdt proteins Phyre2 PDB 3akj chain B Region: 156 - 433 Aligned: 242 Modelled: 266 Confidence: 100.0% Identity: 14% PDB header:transferase Chain: B: PDB Molecule:ctka; PDBTitle: crystal structure of a helicobacter pylori proinflammatory kinase ctka Phyre2 PDB 1cja chain A Region: 150 - 330 Aligned: 147 Modelled: 167 Confidence: 95.1% Identity: 14% Fold: Protein kinase-like (PK-like) Superfamily: Protein kinase-like (PK-like) Family: Actin-fragmin kinase, catalytic domain Phyre2 PDB 3att chain A Region: 175 - 327 Aligned: 148 Modelled: 153 Confidence: 35.5% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of rv3168 with atp Phyre2 PDB 2je8 chain A domain 4 Region: 5 - 29 Aligned: 22 Modelled: 25 Confidence: 33.7% Identity: 14% Fold: Galactose-binding domain-like Superfamily: Galactose-binding domain-like Family: beta-Galactosidase/glucuronidase, N-terminal domain Phyre2 PDB 1bhg chain A domain 2 Region: 1 - 29 Aligned: 26 Modelled: 29 Confidence: 31.4% Identity: 19% Fold: Galactose-binding domain-like Superfamily: Galactose-binding domain-like Family: beta-Galactosidase/glucuronidase, N-terminal domain Phyre2 PDB 1jz8 chain A domain 3 Region: 5 - 29 Aligned: 22 Modelled: 25 Confidence: 30.8% Identity: 18% Fold: Galactose-binding domain-like Superfamily: Galactose-binding domain-like Family: beta-Galactosidase/glucuronidase, N-terminal domain Phyre2 PDB 1yq2 chain A domain 3 Region: 5 - 29 Aligned: 22 Modelled: 25 Confidence: 29.2% Identity: 18% Fold: Galactose-binding domain-like Superfamily: Galactose-binding domain-like Family: beta-Galactosidase/glucuronidase, N-terminal domain Phyre2 PDB 3fn9 chain B Region: 5 - 29 Aligned: 22 Modelled: 25 Confidence: 26.1% Identity: 23% PDB header:hydrolase Chain: B: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis Phyre2 PDB 2vzs chain A domain 4 Region: 5 - 29 Aligned: 25 Modelled: 25 Confidence: 25.0% Identity: 12% Fold: Galactose-binding domain-like Superfamily: Galactose-binding domain-like Family: beta-Galactosidase/glucuronidase, N-terminal domain Phyre2 PDB 3bga chain B Region: 5 - 29 Aligned: 22 Modelled: 25 Confidence: 23.1% Identity: 14% PDB header:hydrolase Chain: B: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482 Phyre2 PDB 1euc chain B domain 2 Region: 202 - 223 Aligned: 22 Modelled: 22 Confidence: 23.1% Identity: 23% Fold: ATP-grasp Superfamily: Glutathione synthetase ATP-binding domain-like Family: Succinyl-CoA synthetase, beta-chain, N-terminal domain Phyre2 PDB 3gm8 chain A Region: 1 - 29 Aligned: 26 Modelled: 29 Confidence: 23.0% Identity: 31% PDB header:hydrolase Chain: A: PDB Molecule:glycoside hydrolase family 2, candidate beta-glycosidase; PDBTitle: crystal structure of a beta-glycosidase from bacteroides vulgatus Phyre2 PDB 3cmg chain A Region: 1 - 29 Aligned: 26 Modelled: 29 Confidence: 22.5% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis Phyre2 PDB 1iow chain A domain 2 Region: 204 - 224 Aligned: 21 Modelled: 21 Confidence: 22.0% Identity: 24% Fold: ATP-grasp Superfamily: Glutathione synthetase ATP-binding domain-like Family: ATP-binding domain of peptide synthetases Phyre2 PDB 1uc8 chain A domain 2 Region: 204 - 223 Aligned: 20 Modelled: 20 Confidence: 20.1% Identity: 15% Fold: ATP-grasp Superfamily: Glutathione synthetase ATP-binding domain-like Family: Lysine biosynthesis enzyme LysX ATP-binding domain Phyre2 PDB 2nu7 chain B domain 2 Region: 202 - 223 Aligned: 22 Modelled: 22 Confidence: 19.2% Identity: 27% Fold: ATP-grasp Superfamily: Glutathione synthetase ATP-binding domain-like Family: Succinyl-CoA synthetase, beta-chain, N-terminal domain Phyre2 PDB 3oba chain A Region: 5 - 29 Aligned: 22 Modelled: 25 Confidence: 19.0% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis Phyre2 PDB 3lpg chain A Region: 5 - 29 Aligned: 22 Modelled: 25 Confidence: 18.8% Identity: 36% PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:beta-glucuronidase; PDBTitle: structure of e. coli beta-glucuronidase bound with a novel, potent2 inhibitor 3-(2-fluorophenyl)-1-(2-hydroxyethyl)-1-((6-methyl-2-oxo-1,3 2-dihydroquinolin-3-yl)methyl)urea Phyre2 PDB 2vzv chain B Region: 5 - 29 Aligned: 25 Modelled: 25 Confidence: 18.8% Identity: 12% PDB header:hydrolase Chain: B: PDB Molecule:exo-beta-d-glucosaminidase; PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan Phyre2 1 c3dntB_ 2 c3akjB_ 3 d1cjaa_ 4 c3attA_ 5 d2je8a4 6 d1bhga2 7 d1jz8a3 8 d1yq2a3 9 c3fn9B_ 10 d2vzsa4 11 c3bgaB_ 12 d1eucb2 13 c3gm8A_ 14 c3cmgA_ 15 d1iowa2 16 d1uc8a2 17 d2nu7b2 18 c3obaA_ 19 c3lpgA_ 20 c2vzvB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3dntB_ 100.0 98 PDB header:transferase Chain: B: PDB Molecule:protein hipa; PDBTitle: structures of mdt proteins 2 c3akjB_ 100.0 14 PDB header:transferase Chain: B: PDB Molecule:ctka; PDBTitle: crystal structure of a helicobacter pylori proinflammatory kinase ctka 3 d1cjaa_ 95.1 14 Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:Actin-fragmin kinase, catalytic domain 4 c3attA_ 35.5 11 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of rv3168 with atp 5 d2je8a4 33.7 14 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 6 d1bhga2 31.4 19 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 7 d1jz8a3 30.8 18 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 8 d1yq2a3 29.2 18 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 9 c3fn9B_ 26.1 23 PDB header:hydrolase Chain: B: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis 10 d2vzsa4 25.0 12 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 11 c3bgaB_ 23.1 14 PDB header:hydrolase Chain: B: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482 12 d1eucb2 23.1 23 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:Succinyl-CoA synthetase, beta-chain, N-terminal domain 13 c3gm8A_ 23.0 31 PDB header:hydrolase Chain: A: PDB Molecule:glycoside hydrolase family 2, candidate beta-glycosidase; PDBTitle: crystal structure of a beta-glycosidase from bacteroides vulgatus 14 c3cmgA_ 22.5 15 PDB header:hydrolase Chain: A: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis 15 d1iowa2 22.0 24 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:ATP-binding domain of peptide synthetases 16 d1uc8a2 20.1 15 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:Lysine biosynthesis enzyme LysX ATP-binding domain 17 d2nu7b2 19.2 27 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:Succinyl-CoA synthetase, beta-chain, N-terminal domain 18 c3obaA_ 19.0 18 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis 19 c3lpgA_ 18.8 36 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:beta-glucuronidase; PDBTitle: structure of e. coli beta-glucuronidase bound with a novel, potent2 inhibitor 3-(2-fluorophenyl)-1-(2-hydroxyethyl)-1-((6-methyl-2-oxo-1,3 2-dihydroquinolin-3-yl)methyl)urea 20 c2vzvB_ 18.8 12 PDB header:hydrolase Chain: B: PDB Molecule:exo-beta-d-glucosaminidase; PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan 21 c3ln7A_ not modelled 18.2 19 PDB header:ligase Chain: A: PDB Molecule:glutathione biosynthesis bifunctional protein gshab; PDBTitle: crystal structure of a bifunctional glutathione synthetase from2 pasteurella multocida 22 c1jz6C_ not modelled 17.6 18 PDB header:hydrolase Chain: C: PDB Molecule:beta-galactosidase; PDBTitle: e. coli (lacz) beta-galactosidase in complex with galacto-2 tetrazole 23 d1e4ea2 not modelled 16.9 25 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:ATP-binding domain of peptide synthetases 24 c3mv14_ not modelled 16.1 18 PDB header:hydrolase Chain: 4: PDB Molecule:beta-galactosidase; PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium 25 c3oq9C_ not modelled 15.2 17 PDB header:apoptosis Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6; PDBTitle: structure of the fas/fadd death domain assembly 26 c1yq2C_ not modelled 14.6 18 PDB header:hydrolase Chain: C: PDB Molecule:beta-galactosidase; PDBTitle: beta-galactosidase from arthrobacter sp. c2-2 (isoenzyme c2-2 2-1) 27 d1ddfa_ not modelled 14.5 12 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 28 c3cqbB_ not modelled 14.1 13 PDB header:hydrolase Chain: B: PDB Molecule:probable protease htpx homolog; PDBTitle: crystal structure of heat shock protein htpx domain from vibrio2 parahaemolyticus rimd 2210633 29 c3ln6A_ not modelled 13.6 10 PDB header:ligase Chain: A: PDB Molecule:glutathione biosynthesis bifunctional protein gshab; PDBTitle: crystal structure of a bifunctional glutathione synthetase from2 streptococcus agalactiae 30 d1kjqa3 not modelled 13.4 27 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:BC ATP-binding domain-like 31 c1bhgB_ not modelled 12.3 23 PDB header:glycosidase Chain: B: PDB Molecule:beta-glucuronidase; PDBTitle: human beta-glucuronidase at 2.6 a resolution 32 c3tqtB_ not modelled 11.8 15 PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: structure of the d-alanine-d-alanine ligase from coxiella burnetii 33 c2ddcA_ not modelled 11.8 14 PDB header:luminescent protein Chain: A: PDB Molecule:photoconvertible fluorescent protein; PDBTitle: unique behavior of a histidine responsible for an2 engineered green-to-red photoconversion process 34 d1ehia2 not modelled 11.6 10 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:ATP-binding domain of peptide synthetases 35 d3etja3 not modelled 11.6 14 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:BC ATP-binding domain-like 36 c1ehiB_ not modelled 11.4 12 PDB header:ligase Chain: B: PDB Molecule:d-alanine:d-lactate ligase; PDBTitle: d-alanine:d-lactate ligase (lmddl2) of vancomycin-resistant2 leuconostoc mesenteroides 37 c1wr2A_ not modelled 10.9 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph1789; PDBTitle: crystal structure of ph1788 from pyrococcus horikoshii ot3 38 c2otbB_ not modelled 10.9 16 PDB header:fluorescent protein Chain: B: PDB Molecule:gfp-like fluorescent chromoprotein cfp484; PDBTitle: crystal structure of a monomeric cyan fluorescent protein2 in the fluorescent state 39 d1tg7a2 not modelled 10.5 27 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Beta-galactosidase LacA, domains 4 and 5 40 d1moua_ not modelled 10.4 14 Fold:GFP-like Superfamily:GFP-like Family:Fluorescent proteins 41 c3da4B_ not modelled 10.2 39 PDB header:antibiotic Chain: B: PDB Molecule:colicin-m; PDBTitle: crystal structure of colicin m, a novel phosphatase2 specifically imported by escherichia coli 42 d1ggxa_ not modelled 10.2 12 Fold:GFP-like Superfamily:GFP-like Family:Fluorescent proteins 43 d1icha_ not modelled 10.1 8 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 44 c1ichA_ not modelled 10.1 8 PDB header:apoptosis Chain: A: PDB Molecule:tumor necrosis factor receptor-1; PDBTitle: solution structure of the tumor necrosis factor receptor-12 death domain 45 c2rcyB_ not modelled 10.1 13 PDB header:oxidoreductase Chain: B: PDB Molecule:pyrroline carboxylate reductase; PDBTitle: crystal structure of plasmodium falciparum pyrroline carboxylate2 reductase (mal13p1.284) with nadp bound 46 c3cglE_ not modelled 9.7 13 PDB header:fluorescent protein Chain: E: PDB Molecule:gfp-like fluorescent chromoprotein dsfp483; PDBTitle: crystal structure and raman studies of dsfp483, a cyan fluorescent2 protein from discosoma striata 47 d2cg4a1 not modelled 9.7 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 48 c3i12A_ not modelled 9.7 15 PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: the crystal structure of the d-alanyl-alanine synthetase a from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2 49 c3riwA_ not modelled 9.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:ascorbate peroxidase; PDBTitle: the crystal structure of leishmania major peroxidase mutant c197t 50 c2z04A_ not modelled 8.8 21 PDB header:lyase Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase atpase PDBTitle: crystal structure of phosphoribosylaminoimidazole2 carboxylase atpase subunit from aquifex aeolicus 51 c2z6zA_ not modelled 8.8 15 PDB header:fluorescent protein Chain: A: PDB Molecule:fluorescent protein dronpa; PDBTitle: crystal structure of a photoswitchable gfp-like protein2 dronpa in the bright-state 52 c3ls1A_ not modelled 8.5 15 PDB header:photosynthesis Chain: A: PDB Molecule:sll1638 protein; PDBTitle: crystal structure of cyanobacterial psbq from synechocystis2 sp. pcc 6803 complexed with zn2+ 53 c2je8B_ not modelled 8.5 9 PDB header:hydrolase Chain: B: PDB Molecule:beta-mannosidase; PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron 54 c3r23B_ not modelled 8.3 11 PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of d-alanine--d-alanine ligase from bacillus2 anthracis 55 d1uisa_ not modelled 8.2 14 Fold:GFP-like Superfamily:GFP-like Family:Fluorescent proteins 56 c2nu9E_ not modelled 8.1 29 PDB header:ligase Chain: E: PDB Molecule:succinyl-coa synthetase beta chain; PDBTitle: c123at mutant of e. coli succinyl-coa synthetase2 orthorhombic crystal form 57 c3se7A_ not modelled 8.0 15 PDB header:ligase Chain: A: PDB Molecule:vana; PDBTitle: ancient vana 58 c3lwbA_ not modelled 7.9 16 PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of apo d-alanine:d-alanine ligase (ddl) from2 mycobacterium tuberculosis 59 d1zyla1 not modelled 7.8 9 Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:APH phosphotransferases 60 d1h5wa_ not modelled 7.7 13 Fold:Upper collar protein gp10 (connector protein) Superfamily:Upper collar protein gp10 (connector protein) Family:Upper collar protein gp10 (connector protein) 61 d3buxb2 not modelled 7.7 30 Fold:N-cbl like Superfamily:N-terminal domain of cbl (N-cbl) Family:N-terminal domain of cbl (N-cbl) 62 c1ijgE_ not modelled 7.6 13 PDB header:viral protein Chain: E: PDB Molecule:upper collar protein; PDBTitle: structure of the bacteriophage phi29 head-tail connector2 protein 63 d2cyya1 not modelled 7.5 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 64 d1z67a1 not modelled 7.5 9 Fold:YidB-like Superfamily:YidB-like Family:YidB-like 65 c2icrD_ not modelled 7.4 17 PDB header:fluorescent protein Chain: D: PDB Molecule:red fluorescent protein zoanrfp; PDBTitle: red fluorescent protein zrfp574 from zoanthus sp. 66 d1i1ga1 not modelled 7.3 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 67 c2pvpB_ not modelled 7.3 26 PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: crystal structure of d-alanine-d-alanine ligase from helicobacter2 pylori 68 c2i80B_ not modelled 7.2 12 PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: allosteric inhibition of staphylococcus aureus d-alanine:d-alanine2 ligase revealed by crystallographic studies 69 c2c9iG_ not modelled 7.0 18 PDB header:luminescent protein Chain: G: PDB Molecule:green fluorescent protein asfp499; PDBTitle: structure of the fluorescent protein asfp499 from anemonia2 sulcata 70 c1e4eB_ not modelled 6.9 20 PDB header:ligase Chain: B: PDB Molecule:vancomycin/teicoplanin a-type resistance protein vana; PDBTitle: d-alanyl-d-lacate ligase 71 c3nezB_ not modelled 6.9 12 PDB header:fluorescent protein Chain: B: PDB Molecule:mrojoa; PDBTitle: mrojoa 72 d1re0b_ not modelled 6.6 19 Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain 73 d1e0ea_ not modelled 6.3 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:N-terminal Zn binding domain of HIV integrase Family:N-terminal Zn binding domain of HIV integrase 74 d2rh7a1 not modelled 6.3 8 Fold:GFP-like Superfamily:GFP-like Family:Fluorescent proteins 75 c1rr7A_ not modelled 6.2 6 PDB header:transcription Chain: A: PDB Molecule:middle operon regulator; PDBTitle: crystal structure of the middle operon regulator protein of2 bacteriophage mu 76 d1rr7a_ not modelled 6.2 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Middle operon regulator, Mor 77 c2w48D_ not modelled 6.2 18 PDB header:transcription Chain: D: PDB Molecule:sorbitol operon regulator; PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae 78 d1bc9a_ not modelled 6.2 25 Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain 79 c1eucB_ not modelled 6.1 24 PDB header:ligase Chain: B: PDB Molecule:succinyl-coa synthetase, beta chain; PDBTitle: crystal structure of dephosphorylated pig heart, gtp-2 specific succinyl-coa synthetase 80 d2ahra1 not modelled 6.1 15 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:ProC C-terminal domain-like 81 c2zo7A_ not modelled 6.1 18 PDB header:luminescent protein Chain: A: PDB Molecule:cyan/green-emitting gfp-like protein, kusabira-cyan mutant PDBTitle: crystal structure of a kusabira-cyan mutant (kcy-r1), a cyan/green-2 emitting gfp-like protein 82 c2l4aA_ not modelled 6.1 13 PDB header:dna binding protein Chain: A: PDB Molecule:leucine responsive regulatory protein; PDBTitle: nmr structure of the dna-binding domain of e.coli lrp 83 c3op0B_ not modelled 6.0 14 PDB header:signaling protein/signaling protein regu Chain: B: PDB Molecule:signal transduction protein cbl-c; PDBTitle: crystal structure of cbl-c (cbl-3) tkb domain in complex with egfr2 py1069 peptide 84 c2a8vA_ not modelled 6.0 24 PDB header:protein/rna Chain: A: PDB Molecule:rna binding domain of rho transcription PDBTitle: rho transcription termination factor/rna complex 85 d2j9ga3 not modelled 5.9 12 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:BC ATP-binding domain-like 86 d1uptd_ not modelled 5.9 14 Fold:GRIP domain Superfamily:GRIP domain Family:GRIP domain 87 c2zdqA_ not modelled 5.8 11 PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of d-alanine:d-alanine ligase with atp2 and d-alanine:d-alanine from thermus thermophius hb8 88 c2dlnA_ not modelled 5.8 19 PDB header:ligase(peptidoglycan synthesis) Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution 89 d1xsza1 not modelled 5.8 31 Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain 90 d1ojra_ not modelled 5.7 18 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase 91 c2ib5H_ not modelled 5.7 10 PDB header:luminescent protein Chain: H: PDB Molecule:chromo protein; PDBTitle: structural characterization of a blue chromoprotein and its yellow2 mutant from the sea anemone cnidopus japonicus 92 c3jr1A_ not modelled 5.6 12 PDB header:transferase Chain: A: PDB Molecule:putative fructosamine-3-kinase; PDBTitle: crystal structure of putative fructosamine-3-kinase2 (yp_719053.1) from haemophilus somnus 129pt at 2.32 a3 resolution 93 d1p1ma1 not modelled 5.6 10 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:SAH/MTA deaminase-like 94 c2jpmA_ not modelled 5.6 33 PDB header:antimicrobial protein Chain: A: PDB Molecule:bacteriocin lactococcin-g subunit beta; PDBTitle: lactococcin g-b in tfe 95 c2vbzA_ not modelled 5.6 4 PDB header:dna-binding protein Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan 96 d1dwka1 not modelled 5.6 19 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Cyanase N-terminal domain 97 d1ku1a_ not modelled 5.6 19 Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain 98 c2iifA_ not modelled 5.5 17 PDB header:recombination/dna Chain: A: PDB Molecule:integration host factor; PDBTitle: single chain integration host factor mutant protein (scihf2-2 k45ae) in complex with dna 99 c3ls8A_ not modelled 5.5 23 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol 3-kinase catalytic subunit PDBTitle: crystal structure of human pik3c3 in complex with 3-[4-(4-2 morpholinyl)thieno[3,2-d]pyrimidin-2-yl]-phenol

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0