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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c2zdqA_

Fold library idPDB HeaderMoleculeTitle
c2zdqA_PDB header: ligaseChain: A: PDB Molecule: d-alanine--d-alanine ligase;PDBTitle: crystal structure of d-alanine:d-alanine ligase with atp2 and d-alanine:d-alanine from thermus thermophius hb8


Added to library: Tue Mar 16 12:59:25 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MRVLLIAGGVSPEHEVSLLSAEGVLRHIPFPTDLAVIAQDGRWLLGEKALTALEAKAAPEGEHPFPPPLS
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Known secondary structure (DSSP)


SSTT
SS

TTS

TTS




SB
SS



 .........80.........90.........100.........110.........120.........130.........140
Sequence WERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVAVRKGE
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Known secondary structure (DSSP) GGG
S


STTTTSST

BSS


TT




TTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence PPVVPFDPPFFVKPANTGSSVGISRVERFQDLEAALALAFRYDEKAVVEKALSPVRELEVGVLGNVFGEA
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Known secondary structure (DSSP)




S
S
TT

TTTT

SGGGTTT
S

SS
SSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence SPVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPGTQETVQELALKAYKVLGVRGMARVDFFLAEGELYL
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Known secondary structure (DSSP)



SSSSS
STTSSSS



T

STT
 .........290.........300.........310.........
Sequence NELNTIPGFTPTSMYPRLFEAGGVAYPELLRRLVELALT
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Known secondary structure (DSSP) SS


STT
STTT

T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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